genome.fa.s1492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001492.1 Kokia drynarioides strain JFW-HI SEQ_113029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48478

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592--2055	29	15.9	28	69	13	233	40	2	24	33	1.67
1592--2042	58	7.7	57	78	10	260	41	2	23	33	1.67
1658--2045	58	6.7	59	81	7	395	41	2	23	32	1.66
3207--3285	3	26.0	3	87	7	106	37	0	0	62	0.96
3992--4072	17	4.8	16	85	8	63	53	4	1	40	1.31
3987--4087	11	8.8	12	70	14	70	51	3	1	42	1.31
3987--4087	6	17.5	6	69	15	70	51	3	1	42	1.31
4041--4087	23	2.0	23	91	0	76	55	2	2	40	1.24
4008--4072	17	3.8	17	93	6	105	55	6	0	38	1.25
4572--4966	98	4.0	98	82	4	429	17	25	18	38	1.92
4827--4958	49	2.7	49	71	14	119	18	27	16	37	1.92
6743--6846	52	2.0	52	100	0	208	25	25	11	38	1.89
9705--9747	18	2.3	18	80	4	50	4	37	2	55	1.33
11753--11802	15	3.3	15	83	8	66	36	2	0	62	1.07
12499--12545	23	2.1	22	96	4	85	55	6	0	38	1.26
12499--12539	10	3.8	10	82	17	55	56	4	0	39	1.21
12513--12574	17	3.7	17	82	4	81	53	4	0	41	1.22
12499--12573	33	2.3	31	78	13	78	54	4	0	41	1.19
13039--13483	209	2.1	209	86	1	624	23	23	17	35	1.95
13298--13814	160	3.2	160	85	5	642	23	22	17	36	1.95
13492--13863	172	2.2	172	90	0	584	23	23	16	36	1.94
13943--14036	37	2.4	37	82	8	98	24	14	35	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13930--14347	39	10.7	39	69	11	131	25	17	31	25	1.97
13980--14351	78	4.7	78	80	1	359	25	17	31	24	1.97
14560--14884	99	3.3	99	87	1	454	19	31	16	32	1.94
14560--14884	49	6.6	49	81	3	355	19	31	16	32	1.94
14921--15025	50	2.1	50	80	3	113	20	33	17	29	1.95
15951--16043	6	15.3	6	72	21	54	3	15	1	80	0.89
15948--16050	34	3.0	35	78	14	92	2	16	0	79	0.90
15963--16066	16	6.4	15	73	16	64	4	13	0	80	0.91
15958--16049	10	9.4	9	75	12	76	2	15	1	81	0.84
15965--16047	4	20.8	4	72	20	50	2	15	1	80	0.87
15958--16047	19	4.7	19	80	13	87	2	15	1	81	0.86
15959--16063	24	4.3	24	79	13	83	4	13	0	80	0.91
20557--20750	97	2.0	97	89	0	298	39	17	18	24	1.91
21128--21339	29	7.5	29	80	9	190	30	2	29	38	1.70
21104--21283	58	3.2	58	83	10	237	28	3	29	37	1.75
21104--21324	84	2.6	87	80	5	218	29	3	30	37	1.73
21366--21464	29	3.4	29	84	9	130	33	2	26	38	1.68
21213--21485	28	9.6	29	78	11	212	34	1	25	38	1.67
21294--21497	60	3.6	58	78	10	154	36	1	24	37	1.65
22145--22192	19	2.6	18	80	6	60	4	14	4	77	1.08
22311--22356	23	1.9	25	86	8	69	30	17	4	47	1.67
22579--22628	15	3.3	15	83	8	66	34	4	0	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23327--23384	10	5.8	10	74	22	59	55	3	0	41	1.17
23341--23412	17	4.2	17	87	0	99	55	4	0	40	1.19
23327--23407	6	14.3	6	70	21	59	54	3	0	41	1.18
23838--23863	11	2.4	11	100	0	52	65	0	34	0	0.93
24205--24442	29	8.1	30	71	16	151	36	23	4	35	1.76
24205--24400	59	3.3	60	76	9	181	37	23	5	33	1.77
24248--24429	59	3.1	58	75	12	167	39	22	4	34	1.74
24220--24429	59	3.5	60	75	10	166	38	22	4	34	1.75
31023--31080	30	1.9	30	100	0	116	46	25	3	24	1.68
32615--32862	42	6.1	41	81	6	274	28	29	15	27	1.96
32580--32855	42	6.9	39	79	4	239	28	28	16	26	1.97
33038--33205	85	2.0	85	81	0	201	37	17	22	22	1.94
32864--33952	208	5.2	208	89	0	1541	38	17	21	22	1.94
33249--33416	85	2.0	85	85	2	230	35	16	23	23	1.95
33665--33831	85	2.0	85	86	4	239	36	13	23	25	1.92
33750--33842	48	1.9	48	82	4	116	38	12	23	24	1.90
34753--34802	14	3.4	14	83	5	55	46	4	2	48	1.32
38110--38278	30	5.7	30	79	4	173	40	3	17	37	1.67
38136--38278	60	2.4	60	87	4	207	38	3	18	39	1.68
38293--38351	29	2.0	29	96	0	109	37	15	11	35	1.84
41545--41678	66	2.0	66	82	5	164	42	20	24	12	1.87
41954--42299	43	8.1	43	82	4	358	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41971--42299	86	3.8	86	81	3	394	31	18	24	25	1.98
41972--42294	171	1.9	171	86	2	459	31	18	25	24	1.98
43775--43812	5	7.6	5	96	0	58	21	65	0	13	1.26
44601--44704	46	2.3	46	82	0	118	64	2	0	31	1.15
46247--46310	13	4.6	13	72	14	56	34	1	1	62	1.14
46235--46305	14	4.7	16	74	15	62	33	1	1	63	1.12
46283--46332	25	2.0	24	81	11	57	40	0	0	60	0.97

Tables:   1

The End!