genome.fa.s14921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014921.1 Kokia drynarioides strain JFW-HI SEQ_129964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122905

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908--957	24	2.1	23	82	10	57	36	6	0	58	1.23
1055--1106	25	2.1	25	86	13	72	50	5	0	44	1.26
960--1096	57	2.5	57	82	8	158	47	2	1	48	1.22
1055--1121	28	2.5	27	81	11	68	49	7	0	43	1.31
1211--1265	16	3.4	16	80	9	67	29	16	5	49	1.68
6989--7018	2	15.0	2	100	0	60	50	0	0	50	1.00
16114--16152	21	1.9	20	84	5	51	35	2	7	53	1.43
18613--18660	12	4.2	12	84	5	64	22	31	0	45	1.53
18816--18891	27	2.7	27	80	15	93	30	0	0	69	0.88
18811--18858	16	2.9	18	74	22	52	29	0	0	70	0.87
18819--18891	28	2.6	29	86	6	105	30	0	0	69	0.88
20800--20944	59	2.5	59	89	0	209	33	7	6	51	1.57
21232--21288	23	2.6	22	81	15	66	63	0	1	35	1.05
28441--28618	94	1.9	94	82	6	227	42	20	10	26	1.85
36759--36795	2	18.5	2	100	0	74	48	0	0	51	1.00
37344--37384	22	2.0	22	85	9	59	58	4	0	36	1.20
47104--47148	24	1.9	24	86	4	65	46	4	2	46	1.35
53166--53213	23	2.0	23	84	11	62	25	6	2	66	1.26
56640--56692	20	2.5	21	75	9	54	45	1	0	52	1.11
59100--59152	20	2.5	21	75	9	54	45	1	0	52	1.11
60100--60147	25	2.0	25	87	4	71	58	2	2	37	1.22
60857--60910	15	3.3	15	74	18	54	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60947--60976	15	1.9	16	93	6	53	43	3	0	53	1.17
61128--61174	21	2.4	19	80	13	51	59	4	0	36	1.17
61165--61206	12	3.3	13	80	16	52	45	0	2	52	1.13
61156--61210	25	2.2	26	80	9	69	52	0	1	45	1.11
62400--62441	17	2.5	17	84	0	57	40	2	2	54	1.26
64188--64418	29	7.9	28	75	12	182	37	29	3	29	1.75
64184--64423	88	2.7	88	79	11	210	36	30	4	29	1.76
66155--66261	30	3.6	30	82	7	137	38	3	20	37	1.71
66149--66261	59	1.9	59	89	3	174	37	3	23	36	1.72
68071--68433	180	2.0	180	83	3	462	24	20	17	37	1.94
68248--68845	206	2.9	206	93	0	991	23	21	18	36	1.95
69066--69267	101	2.0	101	84	0	260	29	17	17	35	1.93
69380--69655	150	1.8	150	85	3	385	15	23	20	40	1.90
69506--69850	101	3.4	99	81	6	399	12	24	21	41	1.88
69539--69835	101	3.0	101	87	3	413	12	24	21	41	1.88
69410--69844	50	8.6	51	69	11	216	13	24	20	40	1.89
70894--70932	18	2.3	18	91	8	64	2	17	0	79	0.84
76546--77007	58	7.9	59	80	6	353	33	4	26	34	1.78
76669--77011	29	11.7	30	76	12	279	33	4	25	36	1.77
76676--77010	116	2.9	116	85	4	419	33	5	25	36	1.78
76676--77010	59	5.8	57	83	6	358	33	5	25	36	1.78
78606--78662	29	2.0	29	83	6	73	40	10	0	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79117--79160	14	2.8	16	80	16	56	47	0	0	52	1.00
96314--96338	3	8.3	3	100	0	50	68	0	0	32	0.90
104175--104209	18	1.9	18	94	0	61	0	51	5	42	1.25
104229--104271	12	3.6	12	80	0	50	4	41	16	37	1.69
104229--104263	18	1.9	18	88	0	52	5	37	17	40	1.73
107238--107575	169	2.0	169	87	1	489	31	19	10	38	1.86
115119--115181	24	2.6	21	75	24	54	34	0	7	57	1.28
116145--116329	96	1.9	96	86	2	264	37	14	18	29	1.90
118706--118768	6	11.0	6	76	10	60	55	4	0	39	1.21
118700--118796	17	5.7	17	82	3	124	56	5	0	38	1.22
118708--118762	11	4.9	11	80	12	58	58	5	0	36	1.21
118720--118764	23	2.0	23	86	8	65	55	6	0	37	1.26

Tables:   1

The End!