genome.fa.s14922.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014922.1 Kokia drynarioides strain JFW-HI SEQ_129965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  257070

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80--155	24	3.2	24	73	14	68	53	2	2	40	1.28
3714--3813	44	2.3	44	98	0	191	25	33	12	30	1.92
5219--5259	21	1.9	22	85	5	57	31	7	9	51	1.62
7804--7851	22	2.0	24	84	11	64	39	6	0	54	1.26
8840--8909	4	17.5	4	75	11	54	70	0	28	1	0.96
8858--8904	20	2.3	20	96	0	85	65	0	34	0	0.93
8858--8919	20	3.2	21	88	8	80	66	0	33	0	0.92
11971--12025	20	2.6	22	82	8	69	29	1	20	49	1.59
11971--12030	21	2.9	21	76	14	61	28	1	20	50	1.58
12298--12386	45	2.0	45	90	0	142	21	24	22	31	1.98
14283--14331	16	3.3	15	73	26	50	34	0	6	59	1.22
15302--15337	18	2.0	18	88	0	54	61	11	0	27	1.30
15469--15508	13	2.9	14	85	11	55	0	22	0	77	0.77
15476--15509	17	2.0	17	100	0	68	0	17	0	82	0.67
17093--17122	15	2.0	15	93	0	51	83	0	16	0	0.65
18315--18354	21	1.9	21	84	0	53	30	2	42	25	1.68
22617--22684	30	2.3	30	86	0	100	32	17	14	35	1.91
26607--26655	14	3.1	16	80	17	57	46	0	0	53	1.00
30030--30434	205	2.0	201	86	3	571	25	14	20	40	1.90
36188--36380	52	3.7	51	78	6	160	34	24	14	25	1.94
37237--37285	20	2.5	19	77	9	53	32	14	4	48	1.62
44411--44460	14	3.1	16	72	27	52	38	2	4	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48646--48690	20	2.1	23	88	12	69	11	15	11	62	1.55
49451--49485	17	2.1	17	89	10	54	62	0	5	31	1.18
49923--49955	17	2.1	17	88	11	52	33	15	0	51	1.43
50725--51088	184	2.0	181	98	1	701	35	10	10	43	1.74
53572--53630	24	2.5	24	75	8	66	22	16	0	61	1.35
58799--59006	106	2.0	107	83	4	269	36	15	13	34	1.87
63169--63199	3	10.3	3	100	0	62	32	0	0	67	0.91
66238--66307	25	2.9	23	81	8	77	38	2	0	58	1.13
66492--66538	24	2.0	23	84	8	60	57	0	2	40	1.11
73798--73854	21	2.7	21	88	0	87	40	1	12	45	1.52
74096--74137	18	2.5	18	81	11	54	33	0	4	61	1.17
74130--74171	16	2.5	17	84	7	59	61	0	0	38	0.96
74603--74645	12	3.6	12	75	12	52	41	4	2	51	1.35
74602--74656	24	2.3	24	87	6	76	47	3	1	47	1.30
75516--75585	23	3.0	23	82	2	95	41	18	12	27	1.87
76604--76644	22	2.0	21	90	9	66	4	12	24	58	1.53
76437--76882	221	2.0	221	90	2	709	24	17	22	35	1.95
76825--76864	20	1.9	21	90	10	64	5	12	22	60	1.52
76877--76910	14	2.4	14	95	0	59	23	0	5	70	1.09
77693--77744	19	2.7	19	82	8	61	34	7	1	55	1.39
77879--77925	20	2.4	20	85	3	60	38	2	0	59	1.09
77853--77940	30	2.9	30	75	10	81	34	5	1	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78060--78217	78	2.0	78	98	0	307	40	8	13	37	1.76
78403--78582	90	2.0	91	90	3	283	36	22	11	30	1.90
82643--82683	18	2.3	18	100	0	82	51	4	9	34	1.56
84193--84381	95	2.0	95	95	0	342	18	19	11	50	1.76
91108--91150	17	2.7	16	83	16	54	60	0	0	39	0.97
92503--92550	26	1.9	24	87	8	69	29	6	18	45	1.74
102002--102072	31	2.3	30	83	7	81	38	4	7	50	1.49
108320--108368	20	2.4	20	83	10	55	22	0	6	71	1.08
108979--109043	18	3.4	18	75	10	67	52	0	1	46	1.10
112106--112162	22	2.4	23	80	11	62	68	8	3	19	1.31
124816--124860	23	2.0	23	100	0	90	48	8	0	42	1.34
125831--125870	9	4.3	9	84	6	53	35	0	0	65	0.93
127050--127113	21	3.1	21	81	4	85	57	0	1	40	1.08
127050--127107	20	2.9	19	85	10	80	58	0	1	39	1.08
136207--136262	27	2.0	28	82	3	69	60	10	1	26	1.40
140373--140425	23	2.3	23	86	0	70	33	30	20	15	1.93
152117--152164	20	2.4	18	80	13	51	50	0	2	47	1.12
159470--159530	31	2.0	30	84	9	79	39	0	1	59	1.08
163097--163121	5	5.0	5	100	0	50	0	20	0	80	0.72
165541--165591	21	2.4	22	77	6	61	33	0	3	62	1.13
173865--173896	8	3.9	8	95	4	55	37	9	25	28	1.87
192961--193003	20	2.2	20	87	4	61	30	0	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197731--197780	25	2.0	26	88	4	75	14	12	24	50	1.76
206647--206685	14	2.7	15	80	8	53	56	10	7	25	1.59
225039--225176	69	2.0	69	100	0	276	40	10	23	26	1.86
225068--225179	37	3.2	37	64	21	103	39	10	21	28	1.87
237590--237691	44	2.2	46	86	5	136	55	1	11	30	1.47
242326--242358	17	1.9	17	88	11	50	30	0	0	69	0.88
247713--247738	6	4.3	6	100	0	52	15	0	53	30	1.42
251860--251885	3	8.7	3	100	0	52	0	34	0	65	0.93

Tables:   1

The End!