genome.fa.s14924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014924.1 Kokia drynarioides strain JFW-HI SEQ_129967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133071

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12157--12542	29	13.2	29	80	7	379	32	2	29	34	1.72
12211--12543	59	5.7	59	82	3	395	31	3	30	35	1.73
14352--14422	29	2.5	27	86	9	88	56	1	1	40	1.17
14334--14420	18	5.4	17	75	19	87	54	1	1	43	1.15
14351--14416	17	3.8	16	84	9	60	54	1	1	42	1.18
14365--14404	11	3.5	11	86	3	53	55	2	0	42	1.13
14334--14420	6	15.0	6	70	20	60	54	1	1	43	1.15
14371--14422	11	5.1	11	77	17	58	57	1	0	40	1.10
14642--14689	24	2.0	24	95	0	87	47	0	31	20	1.50
14715--14762	24	2.0	24	83	0	60	62	0	0	37	0.95
17196--17220	3	8.3	3	100	0	50	0	36	0	64	0.94
17088--17311	117	1.9	117	100	0	448	28	18	8	44	1.79
22573--22644	37	1.9	37	83	5	92	27	4	26	41	1.74
24120--24147	13	2.2	13	100	0	56	21	0	0	78	0.75
28452--28494	18	2.5	17	76	3	50	34	0	2	62	1.08
28549--28715	90	1.9	90	83	1	219	25	14	14	44	1.84
28890--29080	63	3.2	62	86	6	252	45	13	18	23	1.85
30692--31057	123	3.0	123	87	6	537	43	6	12	37	1.69
33388--33419	15	2.1	15	100	0	64	50	6	12	31	1.65
37909--37970	21	3.0	21	74	6	65	20	0	37	41	1.53
37908--37995	28	3.4	28	62	30	68	21	0	35	43	1.53
37915--37975	14	4.4	13	73	19	52	19	0	36	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39316--39424	58	1.9	58	88	1	166	46	0	1	50	1.18
39311--39440	58	2.2	57	83	5	163	46	0	1	50	1.16
40906--41000	47	2.0	48	83	2	120	26	23	15	34	1.95
41024--41137	44	2.5	47	77	8	119	26	21	17	34	1.96
44656--44738	29	2.8	27	72	15	67	49	8	4	37	1.55
46356--46413	29	2.0	29	83	6	73	13	22	41	22	1.89
51671--51744	21	3.5	21	73	0	67	32	22	12	32	1.91
52455--52532	19	4.2	18	85	6	102	25	19	21	33	1.97
52457--52532	38	2.0	38	89	5	118	25	19	22	32	1.97
54166--54209	20	2.2	20	92	8	72	40	4	4	50	1.43
54538--54594	29	1.9	30	82	3	71	47	7	8	36	1.62
56884--56913	16	1.9	16	93	6	53	16	13	0	70	1.18
56879--56939	21	2.8	22	85	11	65	16	9	1	72	1.19
58946--58975	6	4.8	6	92	8	51	0	66	0	33	0.92
58946--58975	13	2.4	12	94	5	51	0	66	0	33	0.92
62054--62087	14	2.4	14	90	0	50	29	17	8	44	1.79
63430--63484	21	2.7	20	73	15	58	25	3	10	60	1.47
63790--63831	16	2.6	17	81	11	52	11	14	11	61	1.56
76130--76449	162	2.0	162	94	0	559	42	20	13	23	1.87
80263--80293	6	5.2	6	100	0	62	80	0	0	19	0.71
80640--80776	67	2.1	65	98	1	231	51	2	14	30	1.57
81255--81318	27	2.5	26	80	10	69	43	1	3	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81741--81774	11	2.9	11	91	8	50	0	20	0	79	0.73
81741--81775	13	2.8	13	91	4	54	0	20	0	80	0.72
85934--85983	3	16.7	3	100	0	100	0	0	34	66	0.92
86484--86562	25	3.2	25	80	3	88	27	11	26	34	1.91
86582--86641	25	2.4	24	81	10	66	26	18	28	26	1.98
90011--90069	23	2.5	24	81	8	68	47	18	23	10	1.79
90811--90843	5	6.6	5	100	0	66	18	60	0	21	1.36
92790--92840	26	2.0	26	88	3	77	41	5	15	37	1.72
93420--93649	113	2.0	113	88	5	340	32	13	13	41	1.82
101368--101594	114	2.0	113	84	4	296	37	12	11	39	1.78
101780--101816	19	2.0	19	89	5	58	64	10	0	24	1.25
110040--110070	3	10.3	3	100	0	62	67	0	0	32	0.91
111731--111827	31	3.2	31	62	24	78	37	24	7	30	1.83
111720--111850	61	2.1	61	100	0	262	37	26	7	28	1.84
112532--112634	45	2.3	45	83	5	118	32	20	15	32	1.94
117599--117626	2	14.0	2	100	0	56	0	50	0	50	1.00
118843--118888	25	1.9	25	86	8	69	34	4	6	54	1.46
122871--122911	17	2.4	17	88	8	57	17	4	0	78	0.93
123868--123904	19	1.9	19	89	10	58	70	0	16	13	1.17
124931--124976	25	1.9	23	86	8	65	36	4	4	54	1.40
131975--132014	13	3.2	13	80	20	50	72	0	7	20	1.08

Tables:   1

The End!