genome.fa.s14928.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014928.1 Kokia drynarioides strain JFW-HI SEQ_129971, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  294720

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3303--3367	26	2.4	27	82	5	78	16	16	33	32	1.92
6302--6391	32	3.1	32	60	34	76	32	3	30	34	1.74
6282--6391	54	2.0	54	100	0	220	32	3	29	34	1.75
10695--10753	26	2.3	26	93	0	100	30	30	15	23	1.95
10741--10804	25	2.6	25	80	5	76	32	21	18	26	1.97
12140--12192	24	2.2	24	86	0	79	28	13	20	37	1.90
17082--17115	15	2.2	16	89	5	52	38	14	20	26	1.91
17190--17291	43	2.4	43	83	12	124	39	1	27	31	1.68
29466--29626	24	6.7	24	80	0	97	40	14	24	20	1.90
29453--29641	48	3.9	48	84	0	225	40	13	23	21	1.89
29454--29641	72	2.6	72	81	0	214	40	13	23	21	1.89
30302--30355	21	2.6	21	96	0	99	24	16	20	38	1.92
40922--40947	13	2.0	13	100	0	52	30	15	7	46	1.74
46127--46252	44	2.8	45	87	2	191	33	22	24	19	1.97
56109--56156	21	2.2	22	88	3	71	35	12	12	39	1.81
62676--62731	27	2.1	27	100	0	112	44	7	10	37	1.67
63143--63269	57	2.2	58	85	5	168	25	18	5	49	1.69
65345--65399	26	2.1	26	86	0	74	36	10	3	49	1.56
65810--65835	2	13.0	2	100	0	52	50	0	0	50	1.00
72971--73000	15	2.0	15	93	0	51	63	0	26	10	1.26
75853--75913	30	2.0	30	100	0	122	37	26	6	29	1.81
84856--84897	9	4.6	9	85	5	57	73	0	16	9	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84854--84896	19	2.3	19	100	0	86	74	0	13	11	1.07
88861--89104	53	4.6	53	75	6	210	37	21	13	27	1.92
95959--95993	18	1.9	18	88	0	52	22	42	8	25	1.82
98890--98988	24	4.1	24	82	0	108	30	23	21	25	1.99
101654--101788	50	2.7	50	78	4	130	28	16	17	37	1.92
117109--117143	3	11.7	3	100	0	70	68	0	0	31	0.90
136009--136084	24	3.3	23	66	23	61	21	21	13	44	1.85
136004--136094	45	2.0	45	97	0	173	20	19	14	45	1.85
140690--140721	2	16.0	2	100	0	64	50	0	0	50	1.00
151677--151717	17	2.4	17	80	19	50	46	14	21	17	1.84
158864--159002	6	23.3	6	81	11	153	15	5	0	78	0.96
165245--165269	8	3.1	8	100	0	50	36	0	12	52	1.39
166792--166840	20	2.5	20	100	0	98	42	10	8	38	1.68
176102--176142	11	3.9	11	87	9	59	48	2	0	48	1.14
184875--184907	12	2.6	13	95	4	59	15	6	0	78	0.93
191013--191093	7	12.1	7	76	15	64	33	18	27	20	1.96
191014--191091	32	2.4	34	89	6	124	34	19	25	20	1.96
192504--192550	16	2.9	16	87	3	67	48	23	0	27	1.51
193425--193568	33	4.4	32	78	7	121	27	1	45	25	1.62
193615--193730	51	2.3	51	81	3	144	30	11	23	35	1.90
198036--198069	15	2.3	15	89	0	50	29	8	23	38	1.85
204117--204222	32	3.3	31	77	11	106	37	16	20	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204180--204268	46	1.9	46	90	0	142	35	15	23	24	1.94
212939--212977	6	6.5	6	87	0	51	46	0	30	23	1.53
218902--218954	5	11.4	5	92	8	78	79	0	0	20	0.74
218901--218954	23	2.4	22	93	6	90	77	0	0	22	0.76
218901--218954	18	2.9	18	97	2	99	77	0	0	22	0.76
223626--223665	15	2.7	15	88	7	55	0	20	0	80	0.72
223615--223664	13	3.8	13	76	19	50	0	20	0	80	0.72
224044--224087	22	2.0	22	86	8	63	56	15	9	18	1.65
224222--224279	17	3.4	17	83	7	64	48	15	18	17	1.82
224779--224858	37	2.2	37	86	0	106	32	23	11	32	1.90
225713--225743	16	1.9	16	93	0	53	22	16	0	61	1.34
228576--228623	17	2.8	17	78	9	62	20	18	12	47	1.81
233625--234348	289	2.5	289	85	1	966	28	25	14	31	1.95
243880--243919	21	1.9	21	85	10	55	57	5	35	2	1.34
244175--244225	18	2.6	19	75	12	50	49	15	33	1	1.56
244340--244406	17	3.9	17	78	7	73	19	22	11	46	1.82
244343--244416	34	2.1	35	85	7	98	17	22	12	47	1.81
244358--244412	17	3.2	17	73	16	60	18	21	12	47	1.82
249452--249493	21	2.0	22	85	4	59	64	4	19	11	1.44
253995--254044	26	1.9	26	95	0	91	46	12	10	32	1.74
255072--255121	15	3.3	15	82	0	64	16	26	2	56	1.51
255780--255825	24	1.9	24	86	8	67	47	4	15	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257364--257393	2	15.0	2	92	0	51	50	3	0	46	1.18
258020--258054	16	2.2	16	94	0	61	57	11	14	17	1.66
258979--259005	7	3.9	7	100	0	54	0	40	0	59	0.98
261781--261825	22	2.0	22	100	0	90	31	13	17	37	1.89
264541--264605	19	3.4	19	84	2	76	41	20	16	21	1.90
265192--265813	309	2.0	309	98	0	1208	30	16	19	32	1.94
268986--269025	19	2.1	19	90	0	62	22	22	17	37	1.94
286748--286889	37	3.9	37	80	3	153	32	30	21	16	1.95
294101--294323	37	6.0	37	82	0	248	30	31	22	15	1.95
294111--294323	111	1.9	111	86	1	302	30	30	22	15	1.95

Tables:   1

The End!