genome.fa.s14931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014931.1 Kokia drynarioides strain JFW-HI SEQ_129974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102131

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4072--4108	17	2.2	17	90	0	56	54	0	2	43	1.14
4874--4914	21	2.0	21	95	0	73	29	4	4	60	1.38
8464--8532	34	2.0	34	97	0	129	47	10	14	27	1.76
16215--16541	52	6.3	52	83	5	405	27	14	22	36	1.92
16218--16498	153	1.8	153	89	1	447	27	14	22	35	1.93
19610--19660	20	2.5	20	74	0	57	17	19	17	45	1.86
21112--21150	19	2.1	19	100	0	78	53	10	25	10	1.66
23643--23731	1	89.0	1	97	0	88	0	0	0	88	0.15
39997--40031	12	2.9	12	91	0	52	54	20	14	11	1.70
43103--43153	22	2.4	22	83	9	61	56	5	1	35	1.35
50516--50635	18	7.3	17	66	23	62	31	9	0	58	1.35
50515--50614	32	3.1	31	73	18	98	32	10	1	57	1.39
50563--50646	15	5.2	15	73	21	57	30	5	1	61	1.27
61634--61675	22	1.9	22	85	9	59	33	0	2	64	1.07
62387--62433	23	2.0	23	100	0	94	44	12	12	29	1.80
74614--74638	2	12.5	2	100	0	50	52	0	48	0	1.00
74988--75026	2	19.5	2	100	0	78	51	0	0	48	1.00
75221--75282	27	2.3	26	78	10	63	32	1	6	59	1.32
75394--75437	20	2.5	17	85	14	54	59	0	0	40	0.98
75757--75823	6	11.0	6	71	9	55	38	2	1	56	1.24
77486--77926	30	14.9	30	78	10	392	33	27	5	33	1.80
77486--77831	59	5.9	59	87	2	441	33	28	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77486--77829	89	3.9	89	83	8	427	33	27	5	33	1.79
77849--78009	58	2.8	58	73	15	152	31	28	5	34	1.80
82279--82321	22	2.0	21	82	13	52	44	11	30	13	1.80
89847--90425	205	2.8	204	89	2	874	35	22	21	20	1.96
90267--90528	119	2.2	120	88	0	391	34	24	20	20	1.96
90513--90583	37	1.9	37	82	0	88	40	21	19	18	1.91
90981--91063	6	13.8	6	71	14	64	38	3	1	56	1.24
90981--91062	17	4.6	18	85	11	114	37	3	1	57	1.24
90981--91062	37	2.3	35	89	8	121	37	3	1	57	1.24
92060--92155	30	3.2	30	87	0	138	19	29	40	10	1.85
92770--93181	29	14.0	29	75	13	312	32	27	6	33	1.81
92769--93207	30	15.0	29	74	14	275	32	27	6	33	1.82
92770--93207	59	7.5	58	77	11	348	32	27	6	33	1.82
96059--96166	53	2.1	53	98	1	209	50	16	7	25	1.70
98157--98228	30	2.4	31	86	6	94	19	16	18	45	1.85
98463--98488	7	3.7	7	100	0	52	88	0	0	11	0.52
98836--98897	30	2.1	30	84	0	79	45	14	8	32	1.74
99294--99348	17	3.5	17	71	19	64	61	3	12	21	1.46
99285--99363	30	2.6	30	87	4	104	63	2	8	25	1.36
99309--99391	30	2.8	30	86	0	103	63	3	7	25	1.36
99869--99927	24	2.5	24	77	0	64	13	30	32	23	1.93
101099--101150	26	2.0	26	100	0	104	30	11	19	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101637--101696	22	2.8	21	80	14	61	21	6	36	35	1.80
101789--102131	86	4.0	86	87	5	532	49	4	4	42	1.41

Tables:   1

The End!