genome.fa.s14932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014932.1 Kokia drynarioides strain JFW-HI SEQ_129975, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269992

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2275--2365	47	1.9	47	97	0	173	32	10	8	47	1.70
2478--2768	59	4.9	60	77	11	237	37	14	18	28	1.91
2478--2640	61	2.6	62	90	0	247	36	17	22	23	1.95
2426--2654	61	3.8	59	82	10	232	36	17	18	27	1.93
2426--2711	59	4.8	57	75	11	209	37	16	17	28	1.92
3844--3879	2	18.5	2	91	5	56	0	44	0	55	0.99
8095--8121	14	1.9	14	100	0	54	25	7	29	37	1.83
16076--16114	21	1.9	20	94	5	69	61	0	12	25	1.31
23287--23462	75	2.3	75	93	0	289	19	47	4	28	1.69
25629--25666	17	2.2	18	85	4	51	57	18	2	21	1.52
33829--34019	63	3.0	63	93	0	312	31	19	15	32	1.93
45712--45777	23	2.9	24	77	8	75	40	19	10	28	1.85
45712--45800	47	1.9	46	86	6	126	42	20	10	26	1.83
48024--48194	86	2.0	86	95	3	306	50	7	7	34	1.58
56056--56090	18	1.9	18	88	0	52	57	20	8	14	1.63
62556--62587	15	2.1	16	88	11	50	25	0	0	75	0.81
63230--63283	2	27.0	2	96	0	99	48	50	1	0	1.11
65389--65534	73	2.0	73	100	0	292	35	23	17	23	1.95
67090--67115	12	2.2	12	100	0	52	34	26	7	30	1.85
69268--69293	8	3.2	8	100	0	52	34	0	0	65	0.93
70991--71027	17	2.1	18	85	14	51	59	0	0	40	0.97
76554--76638	43	2.0	43	80	0	98	48	12	2	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98908--99122	113	1.9	113	92	1	360	46	5	5	42	1.49
100380--100407	2	14.0	2	100	0	56	50	0	0	50	1.00
101440--101478	13	3.0	13	82	14	53	35	5	23	35	1.77
101952--101991	17	2.5	16	84	11	55	60	5	0	35	1.19
104758--104944	97	1.9	97	83	4	243	37	13	16	31	1.88
105171--105276	28	3.7	28	79	12	99	33	5	28	32	1.81
105171--105276	29	3.7	29	79	14	105	33	5	28	32	1.81
107956--108147	23	8.2	23	81	5	188	12	19	21	45	1.83
107993--108181	48	4.0	47	75	13	167	12	19	21	46	1.83
107976--108195	71	3.1	71	87	7	308	12	19	20	46	1.82
110345--110458	45	2.5	45	80	11	133	41	24	21	12	1.88
110345--110470	23	5.5	21	79	17	112	41	23	22	12	1.88
113097--113202	3	34.3	3	84	9	133	37	1	0	60	1.08
113883--113970	6	15.2	6	69	21	55	50	3	1	45	1.26
113876--113970	34	2.6	33	72	23	82	50	3	1	45	1.24
113889--113970	17	4.8	17	80	7	94	50	3	1	45	1.27
125951--126004	26	2.0	29	89	10	87	16	14	22	46	1.84
126775--126826	23	2.3	21	75	12	50	23	23	11	42	1.86
127698--127722	4	6.2	4	100	0	50	24	0	0	76	0.80
127804--127889	43	2.0	43	100	0	172	55	11	9	23	1.64
128007--128073	25	2.7	24	77	6	71	77	0	4	17	0.93
128305--128367	25	2.4	25	82	15	74	36	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128311--128364	25	2.2	24	90	3	81	38	0	0	61	0.96
128321--128361	21	2.1	19	86	9	55	39	0	0	60	0.96
149242--149268	2	13.5	2	100	0	54	51	0	0	48	1.00
156994--157090	31	3.2	31	70	16	76	39	14	0	46	1.45
160994--161438	220	2.0	220	95	0	802	40	20	11	28	1.86
163855--163899	18	2.5	18	96	0	81	46	22	17	13	1.83
174869--174905	16	2.2	18	85	9	51	32	0	0	67	0.91
181162--181203	19	2.2	19	87	8	59	66	0	0	33	0.92
181173--181210	18	2.1	18	85	9	51	65	2	0	31	1.06
183579--183608	15	1.9	16	93	6	53	63	3	33	0	1.11
184287--184356	17	4.2	16	72	15	61	64	7	0	28	1.20
194950--195022	25	2.9	25	89	8	112	43	1	0	54	1.08
206313--206340	2	14.0	2	100	0	56	50	0	0	50	1.00
209874--209918	21	2.1	22	80	12	58	35	0	4	60	1.17
211241--211273	17	1.9	17	88	11	50	84	0	6	9	0.76
211308--211357	18	2.8	17	77	19	57	46	0	0	54	1.00
212259--212291	9	3.9	9	88	11	52	0	9	9	81	0.87
213040--213231	93	2.1	93	86	5	264	32	10	22	34	1.88
225519--225616	48	2.0	48	100	0	196	34	26	18	20	1.95
231135--231204	36	2.0	35	83	5	88	52	10	7	30	1.61
234862--234889	4	7.0	4	100	0	56	50	0	25	25	1.50
238956--238990	17	1.9	18	88	11	54	17	34	2	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255049--255074	5	5.2	5	100	0	52	80	0	0	19	0.71
263761--263814	24	2.3	24	84	9	67	62	0	1	35	1.06
264606--264688	40	2.0	43	81	11	100	50	1	0	48	1.08
265064--265110	23	2.0	24	91	4	78	61	4	2	31	1.27

Tables:   1

The End!