genome.fa.s14936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014936.1 Kokia drynarioides strain JFW-HI SEQ_129979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  436333

Tables:   1   2   

This is table  1  of  2  ( 136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924--962	21	1.9	20	84	5	51	38	5	20	35	1.75
3585--3615	2	15.5	2	100	0	62	0	48	0	51	1.00
28754--28829	6	13.0	6	94	2	120	69	11	17	1	1.25
40102--40131	15	2.0	15	93	0	51	30	0	0	70	0.88
42131--42170	17	2.3	17	82	4	53	52	5	0	42	1.23
46145--46260	20	5.6	20	75	15	94	55	0	5	38	1.28
46144--46298	41	3.8	41	74	13	131	53	1	6	38	1.35
46229--46305	20	3.9	18	77	16	64	53	1	6	38	1.35
46144--46265	10	11.8	10	66	15	52	54	0	4	40	1.28
46546--46638	10	9.4	10	68	14	50	43	3	1	52	1.24
46549--46652	20	5.2	19	72	16	59	45	2	0	50	1.23
46597--46652	20	2.8	21	84	10	64	44	3	0	51	1.18
48461--48485	10	2.5	10	100	0	50	88	0	12	0	0.53
57642--57763	60	2.0	60	100	0	244	43	8	11	36	1.71
58733--58811	23	3.5	22	77	8	86	16	18	21	43	1.88
60887--60965	36	2.2	36	100	0	158	27	26	22	22	1.99
81338--81528	105	1.8	104	89	1	301	32	14	14	38	1.86
89369--89403	17	2.0	17	88	5	52	42	0	2	54	1.15
89420--89469	21	2.5	19	78	15	64	32	16	16	36	1.90
101279--101326	23	2.0	23	84	4	60	45	0	2	52	1.12
120618--120755	44	3.1	44	68	17	140	17	16	20	45	1.85
120618--120786	89	1.9	89	100	0	338	17	14	20	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153220--153359	68	2.1	67	87	1	199	37	22	11	29	1.89
157243--157311	31	2.3	31	82	12	81	21	11	21	44	1.84
158465--158508	19	2.4	18	84	3	52	40	2	6	50	1.42
158594--158854	133	2.0	133	99	0	513	48	11	5	35	1.62
163811--163868	24	2.5	23	73	15	57	55	1	8	34	1.41
167645--167685	6	6.8	6	97	0	64	56	0	43	0	0.99
170890--170915	3	8.7	3	100	0	52	0	30	0	69	0.89
175275--175313	4	10.0	4	91	5	62	25	2	25	46	1.66
182237--182311	29	2.4	30	82	13	80	41	6	13	38	1.70
184664--184710	16	2.9	16	80	20	62	34	0	0	65	0.93
197530--197568	14	2.7	15	80	8	53	25	7	10	56	1.59
199999--200043	6	7.5	6	89	0	63	46	0	31	22	1.52
203254--203283	12	2.4	12	94	5	51	3	6	20	70	1.25
207563--207606	23	2.0	22	86	4	61	38	0	15	45	1.47
221591--221619	3	9.7	3	100	0	58	0	0	65	34	0.93
222652--222682	13	2.3	14	94	5	55	64	0	6	29	1.18
223009--223048	19	2.2	18	86	4	53	42	17	0	40	1.49
228973--229038	33	2.0	33	100	0	132	57	3	3	36	1.29
229506--229686	97	1.9	97	97	0	344	46	7	4	41	1.51
229525--229677	47	3.2	47	63	21	118	45	6	4	43	1.50
230954--230980	13	2.1	13	100	0	54	14	7	48	29	1.71
233512--233823	114	2.7	113	86	1	417	24	25	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233738--233983	92	2.6	94	87	3	336	23	24	16	34	1.95
233738--234024	92	3.1	94	83	5	282	22	24	17	35	1.95
234364--234802	97	4.5	97	77	2	351	21	27	14	36	1.93
234581--234729	47	3.1	46	65	9	109	22	28	12	36	1.90
234489--234808	50	6.5	50	68	7	181	20	29	14	36	1.91
235240--235442	105	1.9	107	82	6	252	37	11	21	29	1.89
240599--240635	13	2.8	13	91	4	56	0	29	0	70	0.88
246741--246813	22	3.2	22	65	14	58	32	12	5	49	1.63
246724--246818	46	2.1	46	97	0	181	32	11	9	46	1.72
247083--247121	16	2.4	16	86	4	51	38	7	5	48	1.54
251476--251508	2	16.5	2	100	0	66	48	0	51	0	1.00
251808--251886	31	2.5	31	83	4	88	68	3	2	25	1.19
253342--253396	25	2.1	28	90	10	89	47	3	14	34	1.62
255011--255067	29	2.0	28	86	6	78	70	7	0	22	1.11
256503--256534	13	2.3	15	89	10	50	31	6	0	62	1.20
259982--260136	81	1.9	81	86	5	224	41	3	3	51	1.36
267085--267171	18	4.8	18	75	10	79	40	1	6	51	1.36
267121--267173	17	3.1	17	76	12	56	49	0	5	45	1.26
268908--269232	29	11.1	28	77	12	262	34	29	4	32	1.76
268903--269200	59	5.1	58	81	8	343	34	30	3	31	1.74
270235--270292	28	2.1	27	83	3	71	12	22	15	50	1.77
270381--270440	11	4.8	12	75	16	52	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270391--270422	16	2.0	16	93	0	55	65	0	0	34	0.93
270381--270433	28	1.9	27	96	3	97	58	0	0	41	0.98
270730--270788	29	2.1	29	90	3	93	55	10	11	22	1.65
271290--271331	22	2.0	22	90	4	68	52	2	0	45	1.13
271278--271370	47	1.9	49	85	8	129	47	1	0	51	1.07
273625--273689	31	2.1	31	83	11	80	47	4	0	47	1.22
282671--282721	22	2.3	22	89	0	75	25	15	27	31	1.96
285521--285551	12	2.5	13	89	10	55	61	19	6	12	1.53
287029--287141	33	3.4	33	78	7	122	26	27	10	35	1.89
287017--287141	66	1.9	66	85	3	171	27	28	10	33	1.90
290136--290305	85	2.0	85	100	0	340	41	17	11	29	1.85
296484--296541	16	3.4	16	72	21	55	43	18	10	27	1.83
296484--296550	35	1.9	35	90	0	107	43	17	10	28	1.82
304127--304152	2	13.0	2	100	0	52	50	0	0	50	1.00
308014--308090	30	2.6	28	78	17	75	48	22	9	20	1.77
308365--308481	61	1.9	62	82	1	146	36	15	3	44	1.63
308684--308736	6	8.7	6	93	2	88	16	13	1	67	1.31
309323--309373	24	2.1	24	92	0	84	21	11	11	54	1.68
315853--315890	18	2.2	18	85	4	51	34	2	2	60	1.24
315990--316057	27	2.5	28	83	7	86	36	2	1	58	1.22
321192--321222	13	2.4	13	94	0	53	3	16	0	80	0.83
327921--328060	58	2.4	59	80	3	149	36	5	26	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328013--328175	59	2.8	58	84	7	179	31	2	26	39	1.69
328042--328175	30	4.5	30	83	10	145	33	1	24	40	1.65
329425--329469	17	2.6	18	82	3	56	53	2	4	40	1.33
329923--330589	206	3.3	206	85	2	968	22	22	19	35	1.96
337028--337070	22	2.0	21	82	13	52	16	30	9	44	1.79
341439--341641	29	6.9	28	79	10	208	35	1	25	36	1.65
341439--341641	59	3.4	58	81	8	241	35	1	25	36	1.65
342914--342958	17	2.6	18	82	3	56	53	2	4	40	1.33
344518--344546	5	5.8	5	100	0	58	0	17	41	41	1.49
347398--347430	9	3.8	9	88	4	50	42	9	0	48	1.35
348930--349005	22	3.5	22	81	0	89	43	18	25	13	1.86
353781--353821	20	2.0	20	90	0	64	24	17	14	43	1.86
365098--365142	18	2.7	18	83	13	60	68	0	0	31	0.89
370516--370817	99	3.1	99	98	0	588	37	4	8	48	1.56
373360--373569	29	7.2	29	82	4	242	33	1	30	34	1.69
373526--373632	51	2.1	50	85	1	142	32	0	30	35	1.64
374175--374201	13	2.1	13	100	0	54	51	33	0	14	1.43
375436--375502	17	3.9	17	78	0	53	50	5	2	40	1.42
375871--376440	206	2.8	206	88	1	815	20	20	21	37	1.94
376926--376986	28	2.2	28	88	5	88	55	8	16	19	1.65
385008--385217	29	7.2	29	82	4	242	33	1	30	34	1.69
385174--385280	51	2.1	50	85	1	142	32	0	30	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385823--385849	13	2.1	13	100	0	54	51	33	0	14	1.43
387084--387150	17	3.9	17	78	0	53	50	5	2	40	1.42
387519--388088	206	2.8	206	88	1	815	20	20	21	37	1.94
388574--388634	28	2.2	28	88	5	88	55	8	16	19	1.65
399823--399866	22	2.0	22	90	4	70	40	0	20	38	1.53
399844--400194	59	6.1	59	74	10	255	32	2	29	34	1.72
399844--400247	30	14.0	29	72	13	255	32	2	29	34	1.72
400013--400057	21	2.1	21	88	8	65	35	2	24	37	1.68
399930--400146	110	2.0	109	85	3	292	30	2	29	36	1.72
400039--400242	88	2.3	90	83	7	247	32	2	28	35	1.73

Tables:   1   2