Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014946.1 Kokia drynarioides strain JFW-HI SEQ_129989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 200457
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 250 characters in sequence are not A, C, G, or T
Found at i:7078 original size:31 final size:31
Alignment explanation
Indices: 7040--7142 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 31
7030 CTTTTGACTT
7040 GTTCAATGACTTAAATGTAAATTTTCTAATA
1 GTTCAATGACTTAAATGTAAATTTTCTAATA
* *
7071 GTTCAATGATCATT--TTGTAACTTTT-TAA-A
1 GTTCAATGA-C-TTAAATGTAAATTTTCTAATA
* * * *
7100 GTTGAGTGACTAAAATGTAAATTTACTAATA
1 GTTCAATGACTTAAATGTAAATTTTCTAATA
* *
7131 GTTTAGTGACTT
1 GTTCAATGACTT
7143 TGGATATAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
27 1 0.02
28 1 0.02
29 16 0.29
30 6 0.11
31 29 0.52
32 1 0.02
33 2 0.04
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.43
Consensus pattern (31 bp):
GTTCAATGACTTAAATGTAAATTTTCTAATA
Found at i:27895 original size:6 final size:6
Alignment explanation
Indices: 27884--27909 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
27874 TATTTAAATA
27884 GTTTTG GTTTTG GTTTTG GTTTTG GT
1 GTTTTG GTTTTG GTTTTG GTTTTG GT
27910 ATGGGCACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (6 bp):
GTTTTG
Found at i:28181 original size:21 final size:23
Alignment explanation
Indices: 28129--28182 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 23
28119 ATTCAAAATA
28129 ATATTTCAAAAATTTTAAAAATTT
1 ATATTT-AAAAATTTTAAAAATTT
*
28153 ATA---AAAAAATTT-AAAATTT
1 ATATTTAAAAATTTTAAAAATTT
28172 ATATTTAAAAA
1 ATATTTAAAAA
28183 AAAAATTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.38
20 8 0.31
22 5 0.19
24 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATTTAAAAATTTTAAAAATTT
Found at i:28182 original size:42 final size:41
Alignment explanation
Indices: 28104--28183 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 41
28094 ATCTCTCGAC
*
28104 AAAAATTACAAAATAATTCAAAATAATATTTCAAAAATTTT
1 AAAAATTACAAAAAAATTCAAAATAATATTTCAAAAATTTT
* * * *
28145 AAAAATTTATAAAAAAATTTAAAATTTATATTTAAAAAA
1 AAAAA-TTACAAAAAAATTCAAAA-TAATATTTCAAAAA
28184 AAAATTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 5 0.16
42 15 0.47
43 12 0.38
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (41 bp):
AAAAATTACAAAAAAATTCAAAATAATATTTCAAAAATTTT
Found at i:45591 original size:20 final size:20
Alignment explanation
Indices: 45568--45607 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
45558 TAATTAAAAT
45568 ATAAATTTAT-TAATAATTTA
1 ATAAATTTATGTAA-AATTTA
*
45588 ATAACTTTATGTAAAATTTA
1 ATAAATTTATGTAAAATTTA
45608 TCTAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
ATAAATTTATGTAAAATTTA
Found at i:46678 original size:6 final size:6
Alignment explanation
Indices: 46667--46732 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
46657 AAAACATCAT
46667 CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG
1 CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG CACCAG
46715 CACCAG CACCAG CACCAG
1 CACCAG CACCAG CACCAG
46733 TTGTTTCTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.33, C:0.50, G:0.17, T:0.00
Consensus pattern (6 bp):
CACCAG
Found at i:49453 original size:5 final size:5
Alignment explanation
Indices: 49443--49485 Score: 68
Period size: 5 Copynumber: 8.6 Consensus size: 5
49433 CAATTCCCTC
* *
49443 CTTTT CTTTT CTTTT CTTTT CCTTT CTTTT CCTTT CTTTT CTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
49486 GCTGTATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (5 bp):
CTTTT
Found at i:54669 original size:17 final size:17
Alignment explanation
Indices: 54628--54720 Score: 112
Period size: 17 Copynumber: 5.9 Consensus size: 17
54618 CCTATTCTTC
54628 TAATTTTCTTTTTAAT-
1 TAATTTTCTTTTTAATA
*
54644 T--TGTT-TTTTTAATA
1 TAATTTTCTTTTTAATA
54658 TAATTTTCTTTTTAATA
1 TAATTTTCTTTTTAATA
54675 TAATTTTCTTTTTAAT-
1 TAATTTTCTTTTTAATA
*
54691 T--TGTT-TTTTTAATA
1 TAATTTTCTTTTTAATA
54705 TAATTTTCTTTTTAAT
1 TAATTTTCTTTTTAAT
54721 TTGTTAGTCT
Statistics
Matches: 65, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
13 16 0.25
14 8 0.12
16 8 0.12
17 33 0.51
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (17 bp):
TAATTTTCTTTTTAATA
Found at i:54681 original size:47 final size:47
Alignment explanation
Indices: 54628--54720 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
54618 CCTATTCTTC
54628 TAATTTTCTTTTTAATTTGTTTTTTTAATATAATTTTCTTTTTAATA
1 TAATTTTCTTTTTAATTTGTTTTTTTAATATAATTTTCTTTTTAATA
54675 TAATTTTCTTTTTAATTTGTTTTTTTAATATAATTTTCTTTTTAAT
1 TAATTTTCTTTTTAATTTGTTTTTTTAATATAATTTTCTTTTTAAT
54721 TTGTTAGTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (47 bp):
TAATTTTCTTTTTAATTTGTTTTTTTAATATAATTTTCTTTTTAATA
Found at i:54700 original size:30 final size:30
Alignment explanation
Indices: 54658--54725 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
54648 TTTTTTAATA
*
54658 TAATTT-TCTTTTTAATATAATTTTCTTTT
1 TAATTTGTTTTTTTAATATAATTTTCTTTT
54687 TAATTTGTTTTTTTAATATAATTTTCTTTT
1 TAATTTGTTTTTTTAATATAATTTTCTTTT
54717 TAATTTGTT
1 TAATTTGTT
54726 AGTCTTGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 6 0.16
30 31 0.84
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.69
Consensus pattern (30 bp):
TAATTTGTTTTTTTAATATAATTTTCTTTT
Found at i:61773 original size:29 final size:28
Alignment explanation
Indices: 61715--61780 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
61705 TTAATGCAAA
* *
61715 TTTTAAAAAATGGGATCTAATTAATATT
1 TTTTAAAAAATGGGAGCTAATGAATATT
* *
61743 TTTTAAAAATTGGGAGCTTAATGAA-AGT
1 TTTTAAAAAATGGGAGC-TAATGAATATT
61771 TTTTAAAAAA
1 TTTTAAAAAA
61781 AGTGCGGGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 26 0.81
29 6 0.19
ACGTcount: A:0.44, C:0.03, G:0.14, T:0.39
Consensus pattern (28 bp):
TTTTAAAAAATGGGAGCTAATGAATATT
Found at i:65483 original size:33 final size:35
Alignment explanation
Indices: 65418--65483 Score: 82
Period size: 36 Copynumber: 1.9 Consensus size: 35
65408 ATGATTAAAC
*
65418 AATTCAATAATATAAATAATACGAAATGTAAATTTT
1 AATTCAATAATATAAATAATACG-AATATAAATTTT
* *
65454 AATTTAATAATATAAATAGTA-G-ATATAAAT
1 AATTCAATAATATAAATAATACGAATATAAAT
65484 AAAATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 7 0.26
35 1 0.04
36 19 0.70
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (35 bp):
AATTCAATAATATAAATAATACGAATATAAATTTT
Found at i:65945 original size:30 final size:30
Alignment explanation
Indices: 65885--65945 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65875 GGATGGGAAG
* * **
65885 GGAGTGAAAGTTTTGGGGGAAAAGTGAAAA
1 GGAGTAAAAGTTTTGGGGAAAAAGCAAAAA
65915 GGAGTAAAAGTTTTGGGGAAAAAGCAAAAA
1 GGAGTAAAAGTTTTGGGGAAAAAGCAAAAA
65945 G
1 G
65946 ATTTGGGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.02, G:0.36, T:0.18
Consensus pattern (30 bp):
GGAGTAAAAGTTTTGGGGAAAAAGCAAAAA
Found at i:66647 original size:17 final size:17
Alignment explanation
Indices: 66622--66700 Score: 61
Period size: 17 Copynumber: 4.6 Consensus size: 17
66612 GGCCCAACAG
* *
66622 AATTTAATTTTTTTTAA
1 AATTAAATTTATTTTAA
*
66639 AATTAAATTTATTTTAG
1 AATTAAATTTATTTTAA
** *
66656 GTTTAAATTTA-CTTAA
1 AATTAAATTTATTTTAA
*
66672 AATTTAAATTTATTATAA
1 AA-TTAAATTTATTTTAA
* *
66690 ATTTAAGTTTA
1 AATTAAATTTA
66701 AATCTATTTA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
16 3 0.06
17 40 0.85
18 4 0.09
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTAAATTTATTTTAA
Found at i:66695 original size:34 final size:33
Alignment explanation
Indices: 66635--66700 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
66625 TTAATTTTTT
* **
66635 TTAAAATTAAATTTATTTTAGGTTTAAATTTAC
1 TTAAAATTAAATTTATTATAAATTTAAATTTAC
*
66668 TTAAAATTTAAATTTATTATAAATTTAAGTTTA
1 TTAAAA-TTAAATTTATTATAAATTTAAATTTA
66701 AATCTATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 6 0.21
34 22 0.79
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (33 bp):
TTAAAATTAAATTTATTATAAATTTAAATTTAC
Found at i:66752 original size:20 final size:19
Alignment explanation
Indices: 66715--66755 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
66705 TATTTAAATT
66715 AATGTCCAAATTAAACATA
1 AATGTCCAAATTAAACATA
66734 AATGTCC-AATTACAAACATA
1 AATGTCCAAATT--AAACATA
66754 AA
1 AA
66756 GGAACGCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 7 0.35
20 9 0.45
ACGTcount: A:0.54, C:0.17, G:0.05, T:0.24
Consensus pattern (19 bp):
AATGTCCAAATTAAACATA
Found at i:67722 original size:59 final size:59
Alignment explanation
Indices: 67639--67897 Score: 260
Period size: 59 Copynumber: 4.4 Consensus size: 59
67629 AAACTGTTTG
* * * *
67639 AAAATTACATTTTTGCCTCC-AAACTTCCAAAAATAT-CATTTTTGACGTCGAAACTTCCA
1 AAAATTCCATTTTTACC-CCTAAACTTCCAAAAAT-TCCATTTTTGACCTCAAAACTTCCA
* * * * * *
67698 TAAATTCCATTTTTACCCCTAAACTTCTAATAATTCCATTTTTTACCCCAAAATTTCCA
1 AAAATTCCATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCA
* * *
67757 AAATTTCCATTTTTGCCCCCAAACTTCCAAAAATTCCA-TTTTGACCTCAAAACTTCCA
1 AAAATTCCATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCA
* * **
67815 AAAATTCCATTTTTA-CCCTCGAACTTCCAAAAATTCTATTTTT-ACC-CTTGAACTTCCA
1 AAAATTCCATTTTTACCCCT-AAACTTCCAAAAATTCCATTTTTGACCTC-AAAACTTCCA
* * *
67873 AAAATTTCATTTTGACCCCAAAACT
1 AAAATTCCATTTTTACCCCTAAACT
67898 CTCAAAATTA
Statistics
Matches: 164, Mismatches: 30, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
57 4 0.02
58 77 0.47
59 83 0.51
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (59 bp):
AAAATTCCATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTCAAAACTTCCA
Found at i:67904 original size:29 final size:29
Alignment explanation
Indices: 67639--67897 Score: 254
Period size: 29 Copynumber: 8.9 Consensus size: 29
67629 AAACTGTTTG
* *
67639 AAAATTACATTTTTGCCTCC-AAACTTCCA
1 AAAATTCCATTTTTACC-CCAAAACTTCCA
** *
67668 AAAATAT-CATTTTTGACGTCGAAACTTCCA
1 AAAAT-TCCATTTTT-ACCCCAAAACTTCCA
* * *
67698 TAAATTCCATTTTTACCCCTAAACTTCTA
1 AAAATTCCATTTTTACCCCAAAACTTCCA
* *
67727 ATAATTCCATTTTTTACCCCAAAATTTCCA
1 AAAATTCCA-TTTTTACCCCAAAACTTCCA
* * *
67757 AAATTTCCATTTTTGCCCCCAAACTTCCA
1 AAAATTCCATTTTTACCCCAAAACTTCCA
* *
67786 AAAATTCCATTTTGACCTCAAAACTTCCA
1 AAAATTCCATTTTTACCCCAAAACTTCCA
*
67815 AAAATTCCATTTTTACCCTC-GAACTTCCA
1 AAAATTCCATTTTTACCC-CAAAACTTCCA
* ***
67844 AAAATTCTATTTTTACCCTTGAACTTCCA
1 AAAATTCCATTTTTACCCCAAAACTTCCA
* *
67873 AAAATTTCATTTTGACCCCAAAACT
1 AAAATTCCATTTTTACCCCAAAACT
67898 CTCAAAATTA
Statistics
Matches: 189, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
29 142 0.75
30 47 0.25
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (29 bp):
AAAATTCCATTTTTACCCCAAAACTTCCA
Found at i:69693 original size:12 final size:13
Alignment explanation
Indices: 69670--69698 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
69660 ATAGGGTGAA
69670 AATTATTATATTG
1 AATTATTATATTG
69683 AATTA-TATATTG
1 AATTATTATATTG
69695 AATT
1 AATT
69699 TTTGGGTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
AATTATTATATTG
Found at i:76886 original size:25 final size:26
Alignment explanation
Indices: 76853--76909 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
76843 AGCTAACCCA
76853 TTTTT-GGT-ATATAATCTTTACACT
1 TTTTTGGGTAATATAATCTTTACACT
* *
76877 TTTTTGGGTAGATATGATGTTTACACT
1 TTTTTGGGTA-ATATAATCTTTACACT
76904 TTTTTG
1 TTTTTG
76910 AAAACTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 5 0.18
25 3 0.11
27 20 0.71
ACGTcount: A:0.21, C:0.09, G:0.16, T:0.54
Consensus pattern (26 bp):
TTTTTGGGTAATATAATCTTTACACT
Found at i:82510 original size:17 final size:17
Alignment explanation
Indices: 82488--82520 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
82478 TTAATATACC
82488 ATTTGACACTTAAATTA
1 ATTTGACACTTAAATTA
*
82505 ATTTGATACTTAAATT
1 ATTTGACACTTAAATT
82521 TTTATGGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (17 bp):
ATTTGACACTTAAATTA
Found at i:88323 original size:86 final size:86
Alignment explanation
Indices: 88178--88349 Score: 308
Period size: 86 Copynumber: 2.0 Consensus size: 86
88168 GACAAGGAGG
*
88178 AGTTGTTGGCTCACAAAAGATGACACTTCGAAGTCAATCTTCCCTCAATATACTTATATACATAC
1 AGTTGTTGGCTCACAAAAGATGACACTTCGAAGTCAATCTTCCCTAAATATACTTATATACATAC
* * *
88243 CAATATTTTGTATTTATTTTT
66 CAATATCTTATATTCATTTTT
88264 AGTTGTTGGCTCACAAAAGATGACACTTCGAAGTCAATCTTCCCTAAATATACTTATATACATAC
1 AGTTGTTGGCTCACAAAAGATGACACTTCGAAGTCAATCTTCCCTAAATATACTTATATACATAC
88329 CAATATCTTATATTCATTTTT
66 CAATATCTTATATTCATTTTT
88350 TTATGTATAA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (86 bp):
AGTTGTTGGCTCACAAAAGATGACACTTCGAAGTCAATCTTCCCTAAATATACTTATATACATAC
CAATATCTTATATTCATTTTT
Found at i:99482 original size:34 final size:33
Alignment explanation
Indices: 99434--99506 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
99424 AGTAACAATA
* * * *
99434 AAAACAACATCAAAATAGTAAAAAAATAGCACC
1 AAAACAACACCAAAACAGTAAAAAAACAACACC
*
99467 AAAACAACAACCAAAACAGTAAAAACACAACACC
1 AAAACAAC-ACCAAAACAGTAAAAAAACAACACC
99501 AAAACA
1 AAAACA
99507 GCAAAAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 8 0.24
34 26 0.76
ACGTcount: A:0.66, C:0.23, G:0.04, T:0.07
Consensus pattern (33 bp):
AAAACAACACCAAAACAGTAAAAAAACAACACC
Found at i:99496 original size:23 final size:22
Alignment explanation
Indices: 99467--99543 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
99457 AAATAGCACC
*
99467 AAAACAACAACCAAAACAGTAA
1 AAAACAACAACCAAAACAGCAA
99489 AAACACAAC-ACCAAAACAGCAA
1 AAA-ACAACAACCAAAACAGCAA
* * *
99511 AAAATAGCAACTAAAACAGCAAA
1 AAAACAACAACCAAAACAGC-AA
99534 AAAACAACAA
1 AAAACAACAA
99544 TATAATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 3 0.07
22 28 0.61
23 15 0.33
ACGTcount: A:0.68, C:0.23, G:0.05, T:0.04
Consensus pattern (22 bp):
AAAACAACAACCAAAACAGCAA
Found at i:102398 original size:5 final size:5
Alignment explanation
Indices: 102388--102412 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
102378 AAAATGTAAA
102388 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
102413 GAGACTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:104256 original size:12 final size:13
Alignment explanation
Indices: 104234--104258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104224 TCATTTCACC
104234 AAACAAAAAAAAA
1 AAACAAAAAAAAA
104247 AAACAAAAAAAA
1 AAACAAAAAAAA
104259 TCATCAATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAAAA
Found at i:104362 original size:4 final size:4
Alignment explanation
Indices: 104355--104387 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
104345 TGCATGCATG
104355 CATA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA C
104388 TTATAGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:106255 original size:18 final size:19
Alignment explanation
Indices: 106232--106267 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
106222 TTATGTCTAT
*
106232 TATTATAGATGA-AAAAAC
1 TATTATAAATGATAAAAAC
106250 TATTATAAATGATAAAAA
1 TATTATAAATGATAAAAA
106268 TAAAACACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (19 bp):
TATTATAAATGATAAAAAC
Found at i:110019 original size:28 final size:30
Alignment explanation
Indices: 109987--110042 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
109977 CTTGAAAAAG
109987 AAATTTTAAAACTTTTG-GGGT-TTAATTA
1 AAATTTTAAAACTTTTGAGGGTATTAATTA
* *
110015 AAATTTTTAAAGTTTTGAGGGTATTAAT
1 AAATTTTAAAACTTTTGAGGGTATTAAT
110043 GAATTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 4 0.17
30 5 0.21
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (30 bp):
AAATTTTAAAACTTTTGAGGGTATTAATTA
Found at i:111601 original size:235 final size:234
Alignment explanation
Indices: 111353--111823 Score: 906
Period size: 235 Copynumber: 2.0 Consensus size: 234
111343 AAATTAGAAA
111353 TTTTTTTTTAAGGGAGCGAAATTAAATTGTAATTTTTATAATAGTAAAAATAGTATGCCTCTTTT
1 TTTTTTTTTAAGGGAGCGAAATTAAATTGTAATTTTTATAATAGTAAAAATAGTATGCCTCTTTT
*
111418 CATAAGAAAGATCTATCTAGATAGCAAACGCGAGGCCAATCTTTCATATGCCGGAGAATTGTATC
66 CATAAGAAAGATCTATCTAGATAGCAAACACGAGGCCAATCTTTCATATGCCGGAGAATTGTATC
*
111483 AATTTATGCACTGATGGTGTGGTTCAAGCTATGTTCAGCACACCTGCTGCTGGAGGAGTAATAAG
131 AATTTATGCACTGATGGTGTGGTTCAAGCTATGTTCAACACACCTGCTGCTGGAGGAGTAATAAG
111548 GTATGGAAATGGGGATTAGATTATGGGATATAATAGAATT
196 GTATGGAAATGGGGATTAGATTATGGGATATAATAG-ATT
111588 TTTTTTTTTAAGGGAGCGAAATTAAATTGTAATTTTTATAATAGTAAAAATAGTATGCCTCTTTT
1 TTTTTTTTTAAGGGAGCGAAATTAAATTGTAATTTTTATAATAGTAAAAATAGTATGCCTCTTTT
111653 CATAAGAAAGATCTATCTAGATAGCAAACACGAGGCCAATCTTTCATATGCCGGAGAATTGTATC
66 CATAAGAAAGATCTATCTAGATAGCAAACACGAGGCCAATCTTTCATATGCCGGAGAATTGTATC
111718 AATTTATGCACTGATGGTGTGGTTCAAGCTATGTTCAACACACCTGCTGCTGGAGGAGTAATAAG
131 AATTTATGCACTGATGGTGTGGTTCAAGCTATGTTCAACACACCTGCTGCTGGAGGAGTAATAAG
*
111783 GTATGGAAATGGGGATTGGATTATGGGATATAATAGATT
196 GTATGGAAATGGGGATTAGATTATGGGATATAATAGATT
111822 TT
1 TT
111824 GGGTGAAAGT
Statistics
Matches: 233, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
234 5 0.02
235 228 0.98
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (234 bp):
TTTTTTTTTAAGGGAGCGAAATTAAATTGTAATTTTTATAATAGTAAAAATAGTATGCCTCTTTT
CATAAGAAAGATCTATCTAGATAGCAAACACGAGGCCAATCTTTCATATGCCGGAGAATTGTATC
AATTTATGCACTGATGGTGTGGTTCAAGCTATGTTCAACACACCTGCTGCTGGAGGAGTAATAAG
GTATGGAAATGGGGATTAGATTATGGGATATAATAGATT
Found at i:113884 original size:20 final size:19
Alignment explanation
Indices: 113846--113885 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
113836 ACCAGCCAAC
* *
113846 AGGAGAAAGAAATGAAGGA
1 AGGAGAAAAAAAGGAAGGA
113865 AGGAGAAAAAGAAGGAAGGA
1 AGGAGAAAAA-AAGGAAGGA
113885 A
1 A
113886 AATCGGTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.03
Consensus pattern (19 bp):
AGGAGAAAAAAAGGAAGGA
Found at i:114056 original size:28 final size:27
Alignment explanation
Indices: 114005--114079 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
113995 AGGGTACTGT
*
114005 TTTGTTTTAATTTTAATTTTAAATTTTG
1 TTTGTTTTAA-TTTAATTTTAAATGTTG
114033 -TTGATTTTAATTT-ATTTTAAAAATGTTG
1 TTTG-TTTTAATTTAATTTT--AAATGTTG
*
114061 TTTGTTATAATTTAATTTT
1 TTTGTTTTAATTTAATTTT
114080 TGATTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 5 0.12
27 6 0.15
28 21 0.52
29 8 0.20
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (27 bp):
TTTGTTTTAATTTAATTTTAAATGTTG
Found at i:114158 original size:30 final size:30
Alignment explanation
Indices: 114118--114191 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
114108 TAGTTTATAG
* **
114118 TTTTTATATTTTTATATGTTATTATAA-TAT
1 TTTTTTTATTTTTATAAATT-TTATAATTAT
*
114148 TTTTTTTA-TTTTATAAATTTTCTAATTAT
1 TTTTTTTATTTTTATAAATTTTATAATTAT
114177 TTTATTTTATTTTTA
1 TTT-TTTTATTTTTA
114192 AATTAGGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 5 0.14
29 15 0.41
30 12 0.32
31 5 0.14
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (30 bp):
TTTTTTTATTTTTATAAATTTTATAATTAT
Found at i:114159 original size:29 final size:29
Alignment explanation
Indices: 114139--114195 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
114129 TTATATGTTA
114139 TTATAA-TATTTTTTTTATTTTATAAATT
1 TTATAATTATTTTTTTTATTTTATAAATT
*
114167 TTCTAATTATTTTATTTTATTTT-TAAATT
1 TTATAATTATTTT-TTTTATTTTATAAATT
114196 AGGTAAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 5 0.19
29 12 0.46
30 9 0.35
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (29 bp):
TTATAATTATTTTTTTTATTTTATAAATT
Found at i:114576 original size:25 final size:25
Alignment explanation
Indices: 114548--114596 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
114538 TATTTTGAAT
*
114548 TCTGCTCTTACTGGCACGTTTTCTC
1 TCTGCTCTTACTGGCACGGTTTCTC
*
114573 TCTGCTCTTAGTGGCACGGTTTCT
1 TCTGCTCTTACTGGCACGGTTTCT
114597 AGTTCTATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.08, C:0.29, G:0.20, T:0.43
Consensus pattern (25 bp):
TCTGCTCTTACTGGCACGGTTTCTC
Found at i:114636 original size:20 final size:19
Alignment explanation
Indices: 114607--114644 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
114597 AGTTCTATTC
114607 TTTCTGTTTCTGGAGTTTTT
1 TTTCTGTTTCTGGA-TTTTT
*
114627 TTTCTTTTTCTGGATTTT
1 TTTCTGTTTCTGGATTTT
114645 CTGTCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.05, C:0.11, G:0.16, T:0.68
Consensus pattern (19 bp):
TTTCTGTTTCTGGATTTTT
Found at i:114651 original size:19 final size:20
Alignment explanation
Indices: 114613--114657 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
114603 ATTCTTTCTG
* *
114613 TTTCTGGAGTTTTTTTTCTT
1 TTTCTGGAGTTTTCTGTCTT
114633 TTTCTGGA-TTTTCTGTCTT
1 TTTCTGGAGTTTTCTGTCTT
*
114652 CTTCTG
1 TTTCTG
114658 TGAATTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.04, C:0.16, G:0.16, T:0.64
Consensus pattern (20 bp):
TTTCTGGAGTTTTCTGTCTT
Found at i:117666 original size:6 final size:6
Alignment explanation
Indices: 117655--117723 Score: 84
Period size: 6 Copynumber: 11.5 Consensus size: 6
117645 TGATCAAAAT
* * *
117655 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGAAAG TGAAAG
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG
* * *
117703 TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGA
117724 TATGAATTGT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 55 1.00
ACGTcount: A:0.46, C:0.00, G:0.30, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:117687 original size:30 final size:30
Alignment explanation
Indices: 117652--117723 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
117642 TTGTGATCAA
117652 AATTGAAAGTGAAAGTGAAAGTGAAATTGG
1 AATTGAAAGTGAAAGTGAAAGTGAAATTGG
117682 AATTGAAAGTGAAAGTGAAAGTGAAATTGG
1 AATTGAAAGTGAAAGTGAAAGTGAAATTGG
117712 AATTGAAAGTGA
1 AATTGAAAGTGA
117724 TATGAATTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (30 bp):
AATTGAAAGTGAAAGTGAAAGTGAAATTGG
Found at i:117688 original size:24 final size:24
Alignment explanation
Indices: 117651--117723 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
117641 TTTGTGATCA
*
117651 AAATTGAAAGTGAAAGTGAAAGTG
1 AAATTGAAATTGAAAGTGAAAGTG
*
117675 AAATTGGAATTGAAAGTGAAAGTG
1 AAATTGAAATTGAAAGTGAAAGTG
* * *
117699 AAAGTGAAATTGGAATTGAAAGTG
1 AAATTGAAATTGAAAGTGAAAGTG
117723 A
1 A
117724 TATGAATTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (24 bp):
AAATTGAAATTGAAAGTGAAAGTG
Found at i:123065 original size:22 final size:23
Alignment explanation
Indices: 123036--123098 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
123026 GGCTGTTAGC
123036 TTTCCAAGAAGG-TGCTGCTGGT
1 TTTCCAAGAAGGATGCTGCTGGT
*
123058 ATTT-CAAG-AGGATGTTGCTGGT
1 -TTTCCAAGAAGGATGCTGCTGGT
*
123080 TTTCCAAGAGAGGTTGCTG
1 TTTCCAAGA-AGGATGCTG
123099 GTTTTGTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 6 0.18
22 17 0.52
23 3 0.09
24 7 0.21
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.33
Consensus pattern (23 bp):
TTTCCAAGAAGGATGCTGCTGGT
Found at i:123095 original size:21 final size:21
Alignment explanation
Indices: 123036--123103 Score: 77
Period size: 21 Copynumber: 3.1 Consensus size: 21
123026 GGCTGTTAGC
123036 TTTCCAAGA-AGGTGCTGCTGGT
1 TTTCCAAGAGAGGT--TGCTGGT
*
123058 ATTT-CAAGAGGATGTTGCTGGT
1 -TTTCCAAGA-GAGGTTGCTGGT
123080 TTTCCAAGAGAGGTTGCTGGT
1 TTTCCAAGAGAGGTTGCTGGT
123101 TTT
1 TTT
123104 GTGTTTTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
21 17 0.43
22 17 0.43
23 3 0.08
24 3 0.08
ACGTcount: A:0.19, C:0.13, G:0.31, T:0.37
Consensus pattern (21 bp):
TTTCCAAGAGAGGTTGCTGGT
Found at i:124686 original size:41 final size:41
Alignment explanation
Indices: 124600--124679 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
124590 ATTCTAAGTT
* **
124600 ATTT-GTGGCACTTTCCCACAAGCGTTGCTAATACTCTGAC
1 ATTTAGTGGCGCTTTCCCACAAGCGCCGCTAATACTCTGAC
* *
124640 ATTTAGTGGCGCTTTCCTACAAGCGCCGCTAATGCTCTGA
1 ATTTAGTGGCGCTTTCCCACAAGCGCCGCTAATACTCTGA
124680 TCTTTAGCGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 4 0.12
41 30 0.88
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (41 bp):
ATTTAGTGGCGCTTTCCCACAAGCGCCGCTAATACTCTGAC
Found at i:130823 original size:15 final size:15
Alignment explanation
Indices: 130790--130824 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
130780 ATGGGAGAAA
*
130790 TAAAAAAAAAAAAAC
1 TAAAATAAAAAAAAC
130805 -AAAATAAAAAAAAC
1 TAAAATAAAAAAAAC
130819 TAAAAT
1 TAAAAT
130825 GACTCTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (15 bp):
TAAAATAAAAAAAAC
Found at i:131703 original size:77 final size:77
Alignment explanation
Indices: 131609--131762 Score: 227
Period size: 77 Copynumber: 2.0 Consensus size: 77
131599 CTTCAACGTC
* * *
131609 TATCCTTATCAATGGCTATTCCTTTGGTCAATAAAATTAAACAACTTGAAGTCCAATAAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAATTAAACAAATTGAACTCCAATAAAAAACC
131674 CTAATTCCCAAT
66 CTAATTCCCAAT
*** * * *
131686 TATCCTTATCAAAGGCTATTCCTTTGGTCAATCTCATTACACAAATTGAACTCCAATCACAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAATTAAACAAATTGAACTCCAATAAAAAACC
131751 CTAATTCCCAAT
66 CTAATTCCCAAT
131763 CCCCAATTCC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (77 bp):
TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAATTAAACAAATTGAACTCCAATAAAAAACC
CTAATTCCCAAT
Found at i:131957 original size:22 final size:22
Alignment explanation
Indices: 131929--131972 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
131919 CACCGTCATC
131929 CAATTTTTATATGAATTAACAG
1 CAATTTTTATATGAATTAACAG
131951 CAATTTTTATATGAATTAACAG
1 CAATTTTTATATGAATTAACAG
131973 TAAAATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
CAATTTTTATATGAATTAACAG
Found at i:132528 original size:14 final size:14
Alignment explanation
Indices: 132509--132539 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
132499 TGAACCTATC
132509 TTTTTTTCT-TATT
1 TTTTTTTCTATATT
132522 TTTTTTTCTATATT
1 TTTTTTTCTATATT
132536 TTTT
1 TTTT
132540 AAAATTTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTCTATATT
Found at i:133731 original size:16 final size:17
Alignment explanation
Indices: 133710--133747 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
133700 TTATGATTTT
133710 AAAAATA-TCAAAATTA
1 AAAAATATTCAAAATTA
* *
133726 AAAAATATTCATATTTA
1 AAAAATATTCAAAATTA
133743 AAAAA
1 AAAAA
133748 GAAATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTCAAAATTA
Found at i:133743 original size:17 final size:16
Alignment explanation
Indices: 133705--133747 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
133695 TCAAATTATG
*
133705 ATTTTAAAAATATCAA
1 ATTTAAAAAATATCAA
* *
133721 AATTAAAAAATATTCAT
1 ATTTAAAAAATA-TCAA
133738 ATTTAAAAAA
1 ATTTAAAAAA
133748 GAAATAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTTAAAAAATATCAA
Found at i:143381 original size:210 final size:207
Alignment explanation
Indices: 143008--143429 Score: 564
Period size: 210 Copynumber: 2.0 Consensus size: 207
142998 GAAGGCATCA
* *
143008 AAGTAAATATTTTGAAGGCTTCATTATCTTTCAAACAAACTCAAGGATTAGTTATTAATTTAATG
1 AAGTAAATATTTTGAAGGCTTCACTATCTTTCAAACAAACCCAAGGATTAGTTATTAATTTAATG
* *
143073 TTGTTGGAATCAGATTAGATTGAATTGATTGATTCAATCAATTCAATTGAGAATTGATAGGTGTA
66 TTGTTGGAATCAG---AGATTGAATTGAATGATCCAATCAATTCAATTGAGAATTGATAGGTGTA
* * * * * *
143138 CTGATCCAGATAGAGATATTGAATTGAATTTTGAGTAAATCGTCCGAAATCGTCATTGTATCAAG
128 CTGATCCAGATAGAGATATTGAATCGAATTTTGAATAAATCATCCGAAACCGTCATTATATAAAG
143203 AACTGGAACTAGTTG
193 AACTGGAACTAGTTG
*
143218 AAGTAACA-ATTTTGAGGGCTTCACTATCTTTCAAACAAACCCAATGTGTGGATTAGTTATTAAT
1 AAGTAA-ATATTTTGAAGGCTTCACTATCTTTCAAACAAACCCAA-----GGATTAGTTATTAAT
* * *
143282 TTAATGTTGTTGGAGTC-G-GATTGGATTGAATGATCCAATCAATTGAATTGAGAATTGATAGGT
60 TTAATGTTGTTGGAATCAGAGATTGAATTGAATGATCCAATCAATTCAATTGAGAATTGATAGGT
* * * *
143345 GTATTGGTCC-GAATAGAGATATTGAATCGGATTTTGAATAAATCATTCGAAACCGTCATTATAT
125 GTACTGATCCAG-ATAGAGATATTGAATCGAATTTTGAATAAATCATCCGAAACCGTCATTATAT
143409 AAAGAACTGGAACTAGTTG
189 AAAGAACTGGAACTAGTTG
143428 AA
1 AA
143430 TTGACTAAAA
Statistics
Matches: 187, Mismatches: 18, Indels: 14
0.85 0.08 0.06
Matches are distributed among these distances:
209 1 0.01
210 153 0.82
211 1 0.01
214 1 0.01
215 31 0.17
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (207 bp):
AAGTAAATATTTTGAAGGCTTCACTATCTTTCAAACAAACCCAAGGATTAGTTATTAATTTAATG
TTGTTGGAATCAGAGATTGAATTGAATGATCCAATCAATTCAATTGAGAATTGATAGGTGTACTG
ATCCAGATAGAGATATTGAATCGAATTTTGAATAAATCATCCGAAACCGTCATTATATAAAGAAC
TGGAACTAGTTG
Found at i:144576 original size:29 final size:28
Alignment explanation
Indices: 144544--144598 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
144534 ATAAAAACTG
*
144544 TTAAATTTTAATAAAACTATAAAAAATAT
1 TTAAAATTTAATAAAA-TATAAAAAATAT
* *
144573 TTAAAATTTATTAAAATTTAAAAAAT
1 TTAAAATTTAATAAAATATAAAAAAT
144599 TATAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (28 bp):
TTAAAATTTAATAAAATATAAAAAATAT
Found at i:144578 original size:39 final size:39
Alignment explanation
Indices: 144535--144617 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
144525 ATAAAAGTTA
* * *
144535 TAAAAACTGTTAAATTTTAATAAAACTATAAAAAATATT-
1 TAAAAACTATTAAAATTTAA-AAAACTATAAAAAAAATTG
** *
144574 TAAAATTTATTAAAATTTAAAAAATTATAAAAAAAATTG
1 TAAAAACTATTAAAATTTAAAAAACTATAAAAAAAATTG
144613 TAAAA
1 TAAAA
144618 TTATAAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 16 0.43
39 21 0.57
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (39 bp):
TAAAAACTATTAAAATTTAAAAAACTATAAAAAAAATTG
Found at i:144617 original size:20 final size:19
Alignment explanation
Indices: 144555--144625 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
144545 TAAATTTTAA
* *
144555 TAAAACTATAAAAAATATT
1 TAAAATTATAAAAAAAATT
**
144574 TAAAATT-T-ATTAAAATT
1 TAAAATTATAAAAAAAATT
144591 TAAAAAATTATAAAAAAAATT
1 T--AAAATTATAAAAAAAATT
144612 GTAAAATTATAAAA
1 -TAAAATTATAAAA
144626 TATATAGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 7 0.17
18 1 0.02
19 12 0.29
20 13 0.32
21 7 0.17
22 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (19 bp):
TAAAATTATAAAAAAAATT
Found at i:144618 original size:39 final size:38
Alignment explanation
Indices: 144544--144656 Score: 113
Period size: 39 Copynumber: 2.9 Consensus size: 38
144534 ATAAAAACTG
* * *
144544 TTAAATTTTAATAAAACTATAAAAAATATT-TAAAATTTA
1 TTAAAATTTAA-AAAATTATAAAAAAAATTGTAAAA-TTA
144583 TTAAAATTTAAAAAATTATAAAAAAAATTGTAAAATTA
1 TTAAAATTTAAAAAATTATAAAAAAAATTGTAAAATTA
* * *
144621 -TAAAATATATAGAAATATAGAAAAAAAATATGTAAA
1 TTAAAATTTA-AAAAAT-TATAAAAAAAAT-TGTAAA
144657 TTTTTATAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
37 8 0.12
38 24 0.38
39 26 0.41
40 6 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (38 bp):
TTAAAATTTAAAAAATTATAAAAAAAATTGTAAAATTA
Found at i:147575 original size:31 final size:31
Alignment explanation
Indices: 147532--147614 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
147522 TTGTCGCTTC
*
147532 ACATGACAGTATATAATTCAACTTCGACAAT
1 ACATTACAGTATATAATTCAACTTCGACAAT
* *
147563 GCATTACAGTATATAATTCAACTTCGGCAAT
1 ACATTACAGTATATAATTCAACTTCGACAAT
147594 ACATTACAGTATATAATTCAA
1 ACATTACAGTATATAATTCAA
147615 TCCCGAAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (31 bp):
ACATTACAGTATATAATTCAACTTCGACAAT
Found at i:147910 original size:61 final size:59
Alignment explanation
Indices: 147780--147911 Score: 185
Period size: 59 Copynumber: 2.2 Consensus size: 59
147770 GGGAAAGCTG
* *
147780 GTGTCAACCATTGGTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGG
1 GTGTCAACCATTGCTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGA
* *
147839 GTGTCAACCATTGCTTGTCAAACACCAAAAAAATTTATTTTTTTATT-TGTATTATTTGTGA
1 GTGTCAACCATTGCTTGTCAAACACCAAAAAAA-TTATTTTTTAATTCT-TATT-TTTATGA
*
147900 GTGTCGACCATT
1 GTGTCAACCATT
147912 AGATGACAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 33 0.51
60 16 0.25
61 16 0.25
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (59 bp):
GTGTCAACCATTGCTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGA
Found at i:147922 original size:61 final size:58
Alignment explanation
Indices: 147780--147929 Score: 176
Period size: 59 Copynumber: 2.5 Consensus size: 58
147770 GGGAAAGCTG
*
147780 GTGTCAACCATTGGTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGG
1 GTGTCAACCATT-GTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGA
* *
147839 GTGTCAACCATTGCTTGTCAAACACCAAAAAAATTTATTTTTTTATT-TGTATTATTTGTGA
1 GTGTCAACCATTG-TTGTCAAACACCAAAAAAA-TTATTTTTTAATTCT-TATT-TTTATGA
* * * *
147900 GTGTCGACCATTAGATGACAAACATCAAAA
1 GTGTCAACCATT-GTTGTCAAACACCAAAA
147930 TATTTTTTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
58 1 0.01
59 32 0.41
60 16 0.20
61 29 0.37
62 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (58 bp):
GTGTCAACCATTGTTGTCAAACACCAAAAAAATTATTTTTTAATTCTTATTTTTATGA
Found at i:148039 original size:60 final size:60
Alignment explanation
Indices: 147946--148133 Score: 173
Period size: 58 Copynumber: 3.1 Consensus size: 60
147936 TTTTATTTTT
* ** * * * *
147946 AGGTGTCGGTCATGGGTTAACAAACACCCAAAAAATATATTTTTGGGTATCTGGATAAGG
1 AGGTGTCGGTCATGAGTTGGCAAGCACCCAAAAAATATATTTTTGGGTATCTGAAAAAAG
* * *
148006 AGGTGTCGGTCATGAGTTGGCAGGCACCC-AAAAA-CTATTTTTGGGTATTTGAAAAAAG
1 AGGTGTCGGTCATGAGTTGGCAAGCACCCAAAAAATATATTTTTGGGTATCTGAAAAAAG
* * * * * * ** *
148064 AGGTGTCGATCATTAATTGGCAAGCACTCAAAAATTATTTTTTTTTGTATCTAAAAAAAG
1 AGGTGTCGGTCATGAGTTGGCAAGCACCCAAAAAATATATTTTTGGGTATCTGAAAAAAG
*
148124 AAAGTGTCGG
1 -AGGTGTCGG
148134 CCATTGCTTT
Statistics
Matches: 101, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
58 43 0.43
59 9 0.09
60 42 0.42
61 7 0.07
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (60 bp):
AGGTGTCGGTCATGAGTTGGCAAGCACCCAAAAAATATATTTTTGGGTATCTGAAAAAAG
Found at i:152531 original size:75 final size:75
Alignment explanation
Indices: 152408--152557 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
152398 TTGAGAAAGT
152408 ATGAACAAATACTATCATGTAATTACATCAATATATCAAAAAAAATATGAAGTAAGTTGTTTGAG
1 ATGAACAAATACTATCATGTAATTACATCAATATATCAAAAAAAATATGAAGTAAGTTGTTTGAG
152473 TGTTTTTTTC
66 TGTTTTTTTC
152483 ATGAACAAATACTATCATGTAATTACATCAATATATCAAAAAAAATATGAAGTAAGTTGTTTGAG
1 ATGAACAAATACTATCATGTAATTACATCAATATATCAAAAAAAATATGAAGTAAGTTGTTTGAG
152548 TGTTTTTTTC
66 TGTTTTTTTC
152558 TAACTTCCAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.37
Consensus pattern (75 bp):
ATGAACAAATACTATCATGTAATTACATCAATATATCAAAAAAAATATGAAGTAAGTTGTTTGAG
TGTTTTTTTC
Found at i:153528 original size:270 final size:270
Alignment explanation
Indices: 152940--153687 Score: 1162
Period size: 270 Copynumber: 2.8 Consensus size: 270
152930 AGAAAACAAG
* * *
152940 CACATC-CAATTTAAAGCATTTGTTAGTGTAATAAT-ATTTTTTCAATGTAACAAAGAGTTCCGA
1 CACATCAC-ATTTAAAGCATTTGTCAATGTAATAATAATTTTTTCAAGGTAACAAAGAGTTCCGA
* * * *
153003 TTCATGGCCGAACTCAGTCCAATGAAAACCGGATTC-GGGGAAATAGGGATAGCAGTTTAAGAGA
65 TTCATCGCCGAACTCAGTCCAAAGAAAGCCGGATTCAGAGG-AATAGGGATAGCAGTTTAAGAGA
* *
153067 CTAAAGTCCAACACCACCTGCTAGGAAAGAAGCATGGAGATCAGGGGCTAATAAAATTCGATCAA
129 CTAAAGTACAACACCACCTGCTAGGAAAGAAGCATGGAGATCAGGGGCTAAT--GATTCGATCAA
*
153132 CACTAAGAACATAGCAGCATTGCATCGTACACACACACACATATAAAAATAAATGTATGCATTCT
192 CACTAAGAACATAGCAGCATTGCATCATACACACACACACATATAAAAATAAATGTATGCATTCT
153197 CACAGCTGAATGTA
257 CACAGCTGAATGTA
* *
153211 CACATCACATTTAAAGCATTTGTCAATGTCATAATAATTTTTTCAAGGTAACAAAGAGTTCCTAT
1 CACATCACATTTAAAGCATTTGTCAATGTAATAATAATTTTTTCAAGGTAACAAAGAGTTCCGAT
*
153276 TCATCACCGAACTCAGTCCAAAGAAAGCCGGATTCAGAGGAATAGGGATAGCAGTTTAAGAGACT
66 TCATCGCCGAACTCAGTCCAAAGAAAGCCGGATTCAGAGGAATAGGGATAGCAGTTTAAGAGACT
* *
153341 AAA-TAACAACACCACCGGCTAGGAAAGAAGCATGGAGATCAGGGGCTAATGATTCAATCAACAC
131 AAAGT-ACAACACCACCTGCTAGGAAAGAAGCATGGAGATCAGGGGCTAATGATTCGATCAACAC
** * *
153405 TTGGAACATAGCAGCATTGCATCATACACACACACACGTATAAAAATAAATGTATTCATTCTCAC
195 TAAGAACATAGCAGCATTGCATCATACACACACACACATATAAAAATAAATGTATGCATTCTCAC
153470 AGCTGAATGTA
260 AGCTGAATGTA
** *
153481 CGTATCACATTTAAAGCATTTGTCAATGTAATAATAATTTTTTCAAGGCAACAAAGAGTTCCGAT
1 CACATCACATTTAAAGCATTTGTCAATGTAATAATAATTTTTTCAAGGTAACAAAGAGTTCCGAT
* * *
153546 TCATCGCAGAAATCGGTCCAAAGAAAGCCGGATTCAGAGGAATAGGGATAGCAGTTTAAGAGACT
66 TCATCGCCGAACTCAGTCCAAAGAAAGCCGGATTCAGAGGAATAGGGATAGCAGTTTAAGAGACT
* * * *
153611 AAAGTACAACACCATCTGCTAGGAAAAAAGCATGGAGATCAGAGGCTAATGATTCGATCAACAGT
131 AAAGTACAACACCACCTGCTAGGAAAGAAGCATGGAGATCAGGGGCTAATGATTCGATCAACACT
153676 AAGAACATAGCA
196 AAGAACATAGCA
153688 CACACAGATA
Statistics
Matches: 436, Mismatches: 36, Indels: 11
0.90 0.07 0.02
Matches are distributed among these distances:
270 271 0.62
271 32 0.07
272 130 0.30
273 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (270 bp):
CACATCACATTTAAAGCATTTGTCAATGTAATAATAATTTTTTCAAGGTAACAAAGAGTTCCGAT
TCATCGCCGAACTCAGTCCAAAGAAAGCCGGATTCAGAGGAATAGGGATAGCAGTTTAAGAGACT
AAAGTACAACACCACCTGCTAGGAAAGAAGCATGGAGATCAGGGGCTAATGATTCGATCAACACT
AAGAACATAGCAGCATTGCATCATACACACACACACATATAAAAATAAATGTATGCATTCTCACA
GCTGAATGTA
Found at i:158506 original size:54 final size:54
Alignment explanation
Indices: 158433--158540 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
158423 AAAATATATG
*
158433 AATGTAAGTGGAAGAAGAATCCAACTTGAGAATTAGGACTAAAGGTAAAATCAC
1 AATGTAAGTGGAAGAAGAATCCAACTTGAGAATTAGGACTAAAGGCAAAATCAC
158487 AATGTAAGTGGAAGAAGAATCCAACTTGAGAATTAGGACTAAAGGCAAAATCAC
1 AATGTAAGTGGAAGAAGAATCCAACTTGAGAATTAGGACTAAAGGCAAAATCAC
158541 TAACATTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.19
Consensus pattern (54 bp):
AATGTAAGTGGAAGAAGAATCCAACTTGAGAATTAGGACTAAAGGCAAAATCAC
Found at i:167742 original size:21 final size:21
Alignment explanation
Indices: 167699--167742 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
167689 CAAAAAAATT
* *
167699 TAAATTTTTAAAAATAAATAA
1 TAAATTATTAAAAATAAAAAA
167720 TAAATTATTAAAAA-AATAAAA
1 TAAATTATTAAAAATAA-AAAA
167741 TA
1 TA
167743 TTCAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TAAATTATTAAAAATAAAAAA
Found at i:167916 original size:17 final size:19
Alignment explanation
Indices: 167890--167933 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
167880 AAAAAATAAA
167890 ATTA-TTTTCA-AGTTTTT
1 ATTATTTTTCAGAGTTTTT
*
167907 -TTATTTTTCAGATTTTTT
1 ATTATTTTTCAGAGTTTTT
167925 ATTATTTTT
1 ATTATTTTT
167934 ATAATATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 6 0.26
18 6 0.26
19 8 0.35
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (19 bp):
ATTATTTTTCAGAGTTTTT
Found at i:184589 original size:12 final size:12
Alignment explanation
Indices: 184572--184597 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
184562 TTTAAGTATG
184572 ATTAATTTTAAA
1 ATTAATTTTAAA
184584 ATTAATTTTAAA
1 ATTAATTTTAAA
184596 AT
1 AT
184598 ATTTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTAATTTTAAA
Found at i:186987 original size:4 final size:4
Alignment explanation
Indices: 186967--187032 Score: 71
Period size: 4 Copynumber: 16.2 Consensus size: 4
186957 AACACATTAC
* * * *
186967 CTTT CTTT CCTT C-TT CTTT CTTT CCTCT CCTT CTTC CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT
187015 CTTTT CTTT CTTT CTTT C
1 C-TTT CTTT CTTT CTTT C
187033 CTGATTATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.06
4 42 0.81
5 7 0.13
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
CTTT
Found at i:187001 original size:17 final size:15
Alignment explanation
Indices: 186967--187028 Score: 66
Period size: 13 Copynumber: 4.6 Consensus size: 15
186957 AACACATTAC
186967 CTTTCTTTCCTTCTT
1 CTTTCTTTCCTTCTT
186982 CTTTCTTTCC-TC-T
1 CTTTCTTTCCTTCTT
*
186995 CCTTC-TTCC-T-TT
1 CTTTCTTTCCTTCTT
187007 CTTTCTTT-CTT-TT
1 CTTTCTTTCCTTCTT
187020 CTTTCTTTC
1 CTTTCTTTC
187029 TTTCCTGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
12 11 0.27
13 18 0.44
14 2 0.05
15 10 0.24
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (15 bp):
CTTTCTTTCCTTCTT
Found at i:187025 original size:25 final size:24
Alignment explanation
Indices: 186966--187032 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
186956 AAACACATTA
186966 CCTTTCTTTCCTTC-TTCTTTCTTT
1 CCTTTCTTT-CTTCTTTCTTTCTTT
* *
186990 CCTCTCCTTCTTCCTTTCTTTCTTT
1 CCTTTCTTTCTT-CTTTCTTTCTTT
*
187015 CTTTTCTTTCTTTCTTTC
1 CCTTTCTTTC-TTCTTTC
187033 CTGATTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 3 0.09
24 8 0.23
25 22 0.63
26 2 0.06
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (24 bp):
CCTTTCTTTCTTCTTTCTTTCTTT
Found at i:196590 original size:29 final size:31
Alignment explanation
Indices: 196533--196590 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
196523 ATACATATGA
*
196533 ATCATAATTCAAATTACATATTTATAATTGT
1 ATCATAATTAAAATTACATATTTATAATTGT
196564 ATCA-AATTAAAATT-CATATGTTA-AATT
1 ATCATAATTAAAATTACATAT-TTATAATT
196591 ATACATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 9 0.36
30 12 0.48
31 4 0.16
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (31 bp):
ATCATAATTAAAATTACATATTTATAATTGT
Found at i:197065 original size:9 final size:10
Alignment explanation
Indices: 197049--197080 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
197039 GGGAAATATT
197049 TATTTTAATG
1 TATTTTAATG
197059 T-TTTTAATG
1 TATTTTAATG
197068 TATTTT-ATG
1 TATTTTAATG
197077 TATT
1 TATT
197081 ATATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (10 bp):
TATTTTAATG
Found at i:198489 original size:2 final size:2
Alignment explanation
Indices: 198482--198547 Score: 55
Period size: 2 Copynumber: 33.5 Consensus size: 2
198472 TTAAACATTC
* * * * *
198482 AT AT AT AT AA AT AT AT TT TT AC AT AT -T AT TT AT AT AT ACT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
*
198523 TT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
198548 GGATAAAGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
1 2 0.04
2 49 0.94
3 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Done.