Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014953.1 Kokia drynarioides strain JFW-HI SEQ_129997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4275
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.36

Warning! 200 characters in sequence are not A, C, G, or T


Found at i:2603 original size:20 final size:20

Alignment explanation


    Indices: 2575--2616  Score: 50
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2565 TTGTTGTTAT

                          *      
       2575 AAGTGAAAA-ACTATTATAAA
          1 AAGTGAAAATA-TAATATAAA

                *               
       2595 AAGTTAAAATATAATATAAA
          1 AAGTGAAAATATAATATAAA

              
       2615 AA
          1 AA

       2617 ATTTACTAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  20   18  0.95
  21    1  0.05

ACGTcount: A:0.64, C:0.02, G:0.07, T:0.26


Consensus pattern (20 bp):   
AAGTGAAAATATAATATAAA

Found at i:4233 original size:19 final size:19

Alignment explanation


    Indices: 4209--4245  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       4199 ATATTAAACA

                  *     *      
       4209 ATATTTTTATTTTATAATG
          1 ATATTTATATTTCATAATG

                              
       4228 ATATTTATATTTCATAAT
          1 ATATTTATATTTCATAAT

       4246 CAACTTTAAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59


Consensus pattern (19 bp):   
ATATTTATATTTCATAATG
Done.