genome.fa.s14954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014954.1 Kokia drynarioides strain JFW-HI SEQ_129998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  252428

Tables:   1   2   

This is table  1  of  2  ( 132 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276--1322	21	2.1	21	84	7	58	38	0	0	61	0.96
2727--2775	25	2.0	26	84	8	66	61	10	6	22	1.50
19055--19111	30	1.9	30	85	0	78	31	1	12	54	1.48
19820--19862	18	2.4	18	88	3	61	55	4	2	37	1.33
21341--21471	44	3.0	44	70	8	106	13	23	16	45	1.83
28581--28639	30	2.0	30	86	0	82	30	1	13	54	1.49
29297--29338	17	2.6	16	85	7	57	54	4	0	40	1.21
34833--34881	21	2.3	21	92	0	80	34	36	6	22	1.79
35555--35627	28	2.6	28	80	8	85	28	19	13	38	1.90
35644--35822	56	3.2	56	81	0	207	37	25	13	22	1.91
35694--35854	28	5.8	28	67	13	73	37	26	14	21	1.92
35628--35836	111	1.9	111	86	4	296	40	24	14	21	1.90
38766--38807	9	4.6	9	77	16	50	76	0	0	23	0.79
38768--38850	19	4.4	19	76	10	82	65	3	1	30	1.17
38767--38825	28	2.1	29	87	9	86	69	1	0	28	0.98
39331--39391	23	2.7	22	80	5	77	45	1	1	50	1.21
40250--40289	20	2.0	20	90	0	62	37	2	2	57	1.26
43135--43208	22	3.2	23	76	16	73	58	1	4	36	1.26
43154--43223	27	2.5	29	79	11	74	60	1	2	35	1.21
43608--43646	20	2.0	19	90	5	60	51	7	0	41	1.31
43857--43905	21	2.3	21	78	0	53	38	0	2	59	1.09
43940--43997	24	2.5	24	83	8	66	27	3	8	60	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44033--44071	17	2.3	17	86	8	53	23	2	5	69	1.21
44126--44151	9	2.9	9	100	0	52	42	0	11	46	1.40
44866--44908	18	2.4	18	88	0	59	69	6	13	9	1.35
44902--44937	11	3.3	11	88	0	54	47	0	52	0	1.00
44902--44944	22	2.0	22	90	0	68	41	0	58	0	0.98
45825--45890	6	11.2	6	72	15	57	40	3	3	53	1.32
45817--45905	17	5.1	17	78	10	90	42	2	4	50	1.35
45824--45876	19	2.9	19	88	8	83	37	3	1	56	1.28
45866--45919	28	2.0	27	81	3	63	46	3	9	40	1.54
46623--46682	24	2.5	24	78	13	68	55	0	3	41	1.16
46621--46694	21	3.5	20	83	3	85	52	0	2	44	1.15
47699--47961	59	4.4	59	89	2	350	37	28	1	31	1.68
47699--47959	89	2.9	88	80	7	267	37	28	1	31	1.68
47699--47959	30	8.8	29	80	4	297	37	28	1	31	1.68
47699--48074	118	3.2	115	79	10	320	35	28	3	31	1.75
47794--48074	59	4.8	58	80	3	169	35	29	4	30	1.77
52191--52237	4	11.8	4	95	0	85	27	21	0	51	1.48
52189--52249	8	7.6	8	94	0	77	32	16	0	50	1.45
52189--52253	12	5.4	12	92	0	76	33	15	0	50	1.44
53055--53085	15	2.1	15	93	0	53	12	16	19	51	1.76
69053--69082	8	3.8	8	100	0	60	86	0	0	13	0.57
69461--69510	24	2.1	24	96	0	91	50	10	12	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70386--70425	21	1.9	21	94	0	71	60	0	10	30	1.30
82133--82171	6	6.5	6	100	0	78	48	0	0	51	1.00
86563--86596	2	16.5	2	87	6	50	50	2	0	47	1.16
87392--87426	11	3.3	11	88	8	54	0	51	0	48	1.00
87385--87426	21	2.0	21	90	0	66	0	57	0	42	0.99
88048--88079	17	2.0	17	88	11	50	59	3	6	31	1.38
88470--88503	16	2.1	16	88	0	50	50	0	0	50	1.00
88640--88678	20	2.0	19	90	5	60	38	0	7	53	1.30
88724--88764	13	3.2	13	100	0	82	46	7	0	46	1.30
89183--89299	11	10.8	11	66	23	54	33	3	0	62	1.18
89142--89304	16	10.2	16	72	19	103	34	3	0	61	1.16
89190--89306	25	5.0	23	76	20	75	33	3	0	62	1.18
89142--89285	41	3.3	43	76	18	124	35	3	0	60	1.19
89242--89283	17	2.5	17	77	14	50	35	4	2	57	1.33
89269--89307	13	3.0	13	92	0	60	35	0	0	64	0.94
91928--91971	16	2.8	16	85	0	61	54	11	6	27	1.61
95503--95527	13	1.9	13	100	0	50	28	8	8	56	1.57
96005--96051	13	3.7	13	76	23	55	42	0	2	55	1.12
97503--97596	18	5.4	18	92	3	131	28	9	25	36	1.87
103766--103806	21	2.0	21	90	0	64	43	7	12	36	1.70
103819--103860	23	2.0	22	86	13	61	54	7	0	38	1.28
103812--103880	26	2.6	26	93	2	111	53	7	1	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103915--103943	14	2.1	14	100	0	58	51	13	0	34	1.42
104445--104473	14	2.1	14	100	0	58	27	0	27	44	1.54
105655--105694	19	2.1	19	86	9	55	55	2	12	30	1.50
107624--107653	15	2.0	15	93	0	51	50	3	6	40	1.45
109157--109214	23	2.5	22	78	15	64	13	1	36	48	1.53
109460--109786	42	8.0	42	82	7	372	26	16	25	30	1.97
109460--109786	82	4.0	82	81	7	389	26	16	25	30	1.97
109460--109786	121	2.7	124	88	1	480	26	16	25	30	1.97
119006--119052	16	2.8	17	80	6	60	19	19	12	48	1.80
121739--122072	49	6.9	49	77	3	271	22	24	15	36	1.93
122524--122727	112	1.8	112	90	2	329	39	9	20	30	1.84
123787--123841	26	2.1	26	89	0	83	30	21	20	27	1.98
123948--124041	37	2.6	36	81	9	102	23	17	29	29	1.97
128330--128414	26	3.3	26	91	4	129	30	23	16	29	1.96
129114--129146	12	2.6	13	85	9	50	3	18	0	78	0.87
130056--130095	10	4.0	10	83	9	55	2	10	0	87	0.63
130056--130095	19	2.1	19	90	0	62	2	10	0	87	0.63
133530--133559	15	2.0	15	100	0	60	46	6	0	46	1.29
139942--139993	26	2.0	26	88	0	77	34	21	11	32	1.89
140395--140433	17	2.2	18	86	13	55	33	7	20	38	1.81
143310--143357	20	2.4	20	76	10	62	20	12	12	54	1.70
143385--143425	20	2.0	21	90	4	66	24	17	7	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143319--143461	69	2.1	68	93	2	243	21	13	7	56	1.62
144052--144610	100	5.6	100	89	0	764	36	18	20	24	1.95
144133--144296	53	3.2	53	65	15	146	37	17	20	24	1.94
145217--145272	28	2.0	28	89	0	85	48	35	5	10	1.61
146568--146746	4	43.2	4	71	20	102	20	3	5	70	1.20
146585--146761	83	2.1	84	86	8	243	21	3	5	70	1.22
146631--146763	51	2.5	53	82	12	159	22	1	4	71	1.12
146723--146757	15	2.3	15	90	0	52	22	2	5	68	1.24
146837--146880	17	2.4	17	85	11	52	31	0	0	68	0.90
146836--146878	19	2.3	19	80	11	52	30	0	0	69	0.88
146835--146888	20	2.8	18	81	13	54	31	1	0	66	1.02
146847--146927	32	2.6	30	79	12	83	30	3	2	62	1.25
148405--148948	272	2.0	272	93	0	937	32	16	20	30	1.94
149749--149807	25	2.4	25	94	0	100	37	11	16	33	1.86
149762--149818	25	2.3	25	87	0	78	42	10	15	31	1.81
155875--155960	20	4.4	20	75	5	77	39	18	9	32	1.83
166474--166550	22	3.5	22	77	11	68	37	0	16	45	1.48
166601--166638	18	2.1	19	85	9	53	21	0	10	68	1.19
166553--166681	43	3.1	43	81	7	133	21	0	17	61	1.35
171650--171703	20	2.7	20	85	0	81	38	18	3	38	1.69
173122--173162	20	2.0	20	100	0	82	29	19	9	41	1.83
179017--179158	72	2.0	72	100	0	284	35	17	5	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183782--183808	2	13.5	2	100	0	54	0	0	48	51	1.00
184300--184337	2	19.0	2	94	0	67	50	2	47	0	1.15
189407--189436	2	15.0	2	92	0	51	53	0	46	0	1.00
196527--196628	21	4.9	21	79	4	98	27	28	18	25	1.98
196527--196649	42	2.9	42	81	3	122	27	29	17	25	1.98
196527--196649	21	5.8	21	79	6	79	27	29	17	25	1.98
197360--197497	74	1.9	74	84	3	188	21	18	29	30	1.97
206302--206553	48	5.3	47	83	1	297	24	26	12	36	1.91
206296--206553	96	2.7	95	86	2	336	24	27	12	36	1.91
206333--206553	72	3.1	72	81	0	262	23	26	12	37	1.90

Tables:   1   2