genome.fa.s14955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014955.1 Kokia drynarioides strain JFW-HI SEQ_129999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150147

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395--1423	13	2.1	14	93	6	51	27	0	0	72	0.85
10350--10471	59	2.1	59	90	6	203	54	18	9	17	1.69
14905--14959	16	3.4	16	78	9	67	14	25	0	60	1.35
14935--14969	16	2.2	16	89	0	52	20	28	0	51	1.47
22735--22870	60	2.2	60	75	14	136	49	16	11	22	1.78
26062--26095	17	2.1	16	88	5	50	26	0	2	70	1.01
28964--29006	20	2.0	21	86	8	61	23	0	6	69	1.12
31354--31388	18	1.9	18	88	0	52	45	0	5	48	1.26
34977--35033	20	2.8	19	71	10	51	24	1	5	68	1.20
35099--35153	24	2.3	23	78	9	65	45	16	7	30	1.74
35109--35154	24	1.9	24	90	0	74	43	19	8	28	1.80
42522--42579	31	1.9	30	83	13	75	10	12	1	75	1.11
47365--47440	29	2.6	28	77	8	80	38	3	2	55	1.33
47529--47563	17	2.1	17	94	0	61	37	0	2	60	1.12
57923--58399	209	2.3	208	91	1	760	37	19	22	20	1.94
59352--59653	29	10.5	29	74	13	114	36	22	3	37	1.71
59391--59711	57	5.6	57	79	10	298	34	23	3	37	1.72
59439--59734	29	10.3	29	73	16	215	36	23	3	36	1.72
59461--59734	116	2.4	115	84	4	297	36	23	2	36	1.70
63708--63759	7	7.7	7	77	16	56	40	0	1	57	1.10
63716--63809	17	5.6	18	78	13	101	37	1	4	57	1.25
63711--63821	6	19.5	6	71	15	58	39	0	3	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63716--63806	34	2.7	33	88	5	130	37	1	4	57	1.26
63816--63876	22	2.9	22	85	4	81	54	19	3	22	1.59
65306--65336	12	2.6	12	94	0	53	25	9	0	64	1.24
65643--65720	30	2.6	29	76	11	70	33	21	2	42	1.67
65707--65772	29	2.3	29	79	10	73	40	19	6	33	1.76
65853--65940	30	3.0	30	78	6	99	39	22	1	36	1.62
65944--66044	29	3.5	30	78	5	109	34	22	5	36	1.79
65944--66072	58	2.2	58	82	5	154	34	23	6	35	1.80
65969--66072	29	3.6	28	73	11	77	35	23	5	35	1.79
66027--66085	29	2.0	29	83	6	75	35	22	5	37	1.76
71227--71268	14	2.9	14	89	3	57	85	0	14	0	0.59
71227--71268	12	3.3	12	90	6	57	85	0	14	0	0.59
72509--72673	41	4.0	41	84	5	208	35	15	17	31	1.91
72510--72672	82	2.0	82	87	2	238	36	15	17	30	1.91
72700--73272	78	7.4	78	84	1	623	22	29	21	26	1.99
73090--73335	117	2.1	117	82	6	302	23	30	18	26	1.98
72724--73333	39	15.7	39	68	10	257	23	29	20	26	1.99
73129--73345	117	1.9	117	88	1	328	23	29	20	26	1.99
73760--73836	34	2.3	35	86	4	104	33	1	5	59	1.28
73761--73848	6	15.5	6	72	11	51	36	1	4	57	1.26
75750--76123	29	12.8	29	69	14	155	35	27	5	31	1.79
75788--75941	59	2.6	59	75	10	163	36	26	6	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75937--76006	28	2.4	29	85	4	88	40	22	0	37	1.55
75831--76123	58	5.0	57	72	13	190	35	27	4	32	1.78
88303--88415	31	3.5	31	81	10	113	25	17	10	46	1.80
88621--88746	58	2.2	59	86	4	175	47	12	16	23	1.81
88648--88746	30	3.4	29	71	13	87	47	13	17	22	1.81
105526--105559	6	5.7	6	100	0	68	50	0	32	17	1.47
106568--106598	16	1.9	16	93	0	53	6	22	22	48	1.73
107870--107938	11	6.6	11	68	22	51	43	0	1	55	1.08
107870--107924	28	2.0	28	88	0	83	41	0	1	56	1.10
107867--107938	17	4.2	17	75	16	69	45	0	1	52	1.09
108664--108695	10	3.2	10	95	0	55	43	0	0	56	0.99
109661--110101	59	7.5	58	78	11	343	34	29	4	31	1.78
109661--110092	29	14.7	29	74	14	236	34	28	4	32	1.78
110079--110140	28	2.2	28	85	2	79	37	29	8	25	1.85
114258--114316	31	1.9	31	86	6	84	38	0	3	57	1.15
131439--131508	33	2.1	33	84	10	90	52	2	4	40	1.36
134098--134150	19	2.7	19	79	5	52	33	1	7	56	1.38
136705--136807	52	2.0	52	88	0	152	59	3	9	27	1.47
137267--137342	30	2.5	31	73	4	73	36	5	5	52	1.47
149556--149628	29	2.5	29	84	6	85	49	6	1	42	1.38

Tables:   1

The End!