genome.fa.s14958.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014958.1 Kokia drynarioides strain JFW-HI SEQ_130002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273762

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91--206	4	28.5	4	74	10	92	0	35	0	63	1.00
99--156	20	2.8	20	97	2	107	0	39	0	60	0.97
125--204	29	2.8	29	94	0	133	1	33	0	65	1.01
174--206	17	1.9	17	93	0	57	3	27	0	69	1.03
10190--10236	23	2.0	23	100	0	94	34	10	17	38	1.84
12053--12083	9	3.3	9	91	8	53	41	0	3	54	1.16
12557--12616	23	2.6	23	76	7	59	56	3	0	40	1.16
29311--29354	18	2.4	18	100	0	88	4	9	31	54	1.52
31893--32249	101	3.5	101	85	0	455	34	17	21	26	1.95
31902--32165	50	5.2	49	68	8	145	34	17	21	27	1.95
31956--32223	51	5.3	50	68	7	157	33	16	21	28	1.95
35702--36650	23	41.4	23	85	1	1260	32	6	14	46	1.69
36720--36831	36	3.1	36	84	3	138	28	10	25	35	1.89
36730--36828	36	2.8	36	90	1	146	28	12	23	36	1.90
36855--37593	376	2.0	366	86	6	1019	27	11	24	37	1.89
38492--38554	24	2.6	24	82	0	72	26	14	9	49	1.74
40457--40519	24	2.6	24	87	0	90	25	15	9	49	1.75
41195--41244	19	2.6	19	83	3	55	6	10	8	76	1.17
50852--50919	32	2.1	33	83	8	86	38	11	7	42	1.69
54722--54762	17	2.4	17	91	0	64	17	9	36	36	1.82
59633--59696	32	2.0	32	100	0	128	37	18	15	28	1.92
64489--64590	50	2.0	50	86	3	143	49	9	1	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66002--66152	62	2.4	62	86	2	205	31	6	27	34	1.83
66106--66189	42	2.0	42	100	0	168	33	7	26	33	1.83
67950--67982	7	4.7	7	96	0	57	33	0	39	27	1.57
68584--68646	24	2.6	24	87	0	90	50	9	14	25	1.72
70550--70613	24	2.7	24	90	0	101	50	7	14	28	1.70
74713--74831	56	2.1	55	83	4	141	39	4	24	31	1.74
76773--76887	25	4.6	25	80	3	115	23	16	26	33	1.95
76771--76870	50	2.0	50	86	3	139	23	14	25	38	1.92
90488--90526	12	3.4	11	82	10	51	84	5	0	10	0.76
100705--100758	22	2.4	23	84	9	76	74	5	0	20	1.02
100718--100755	8	5.1	8	87	12	55	78	0	0	21	0.74
107977--108103	25	5.0	25	74	2	110	26	18	22	32	1.97
107980--108076	50	1.9	51	87	2	142	24	18	23	32	1.97
108053--108102	26	1.9	26	84	8	66	30	14	22	34	1.93
110621--110748	56	2.3	55	78	9	143	37	3	21	37	1.72
111036--111088	27	2.0	27	85	7	72	26	1	24	47	1.62
121192--121242	21	2.4	21	83	6	68	33	27	11	27	1.92
121999--122444	195	2.3	195	83	6	541	28	28	16	26	1.97
124549--124600	27	1.9	27	84	7	70	19	1	5	73	1.14
125638--125685	20	2.4	20	82	0	60	27	6	6	60	1.45
125655--125705	24	2.3	20	78	21	50	29	7	7	54	1.57
131076--131128	21	2.5	21	84	6	63	32	11	22	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143246--143349	23	4.9	21	75	18	90	5	5	20	68	1.32
143245--143331	41	2.1	41	89	8	133	4	5	21	67	1.30
143246--143318	20	3.5	20	81	7	92	4	5	23	67	1.29
143311--143372	12	5.4	11	84	3	52	8	4	17	69	1.31
143311--143379	24	2.9	24	86	2	95	8	4	17	69	1.31
143322--143379	12	4.8	12	89	0	89	8	3	15	72	1.23
143346--143413	32	2.1	32	86	0	91	10	5	13	70	1.32
143366--143450	41	2.1	39	86	4	116	14	4	14	67	1.39
143997--144074	29	2.6	30	76	17	81	37	3	1	57	1.25
149327--149384	27	2.1	28	83	3	73	36	17	18	27	1.94
149498--149639	29	5.0	29	77	9	103	29	13	22	34	1.92
150772--150945	69	2.5	69	79	1	170	22	18	18	39	1.93
164707--164770	33	1.9	33	93	0	110	26	15	20	37	1.92
168369--168401	15	2.2	15	89	10	50	81	3	0	15	0.80
172555--172655	26	3.9	26	74	0	76	27	17	23	30	1.97
179591--179629	20	2.0	20	85	10	53	33	0	23	43	1.54
205959--206009	18	2.6	21	75	18	63	17	11	11	58	1.62
206612--206651	12	3.6	11	83	9	55	77	0	22	0	0.77
208758--208993	118	2.0	118	96	0	436	40	17	13	28	1.87
209833--209867	18	1.9	18	88	0	52	51	11	20	17	1.75
212243--212291	24	2.1	23	88	3	71	28	16	8	46	1.75
234938--234979	13	3.1	14	80	16	52	73	0	7	19	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234938--234987	26	1.9	26	84	8	66	74	0	10	16	1.08
236532--236558	14	1.9	14	100	0	54	7	37	0	55	1.28
238999--239184	88	2.0	91	86	12	263	45	10	10	33	1.73
248429--248598	41	4.2	41	82	4	175	20	21	27	31	1.98
263583--263642	26	2.3	27	80	8	70	36	26	13	23	1.92
271447--271541	30	3.4	27	76	20	81	61	3	0	35	1.12
271506--271539	15	2.2	16	89	5	52	67	0	0	32	0.91
272031--272055	13	1.9	13	100	0	50	64	0	4	32	1.12
272938--272978	11	3.8	11	87	3	57	46	0	0	53	1.00

Tables:   1

The End!