Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001496.1 Kokia drynarioides strain JFW-HI SEQ_113034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31


Found at i:635 original size:11 final size:11

Alignment explanation


    Indices: 619--649  Score: 55
    Period size: 10  Copynumber: 2.9  Consensus size: 11

        609 TTCTGACTTT

                       
        619 GAAAAATTATA
          1 GAAAAATTATA

                       
        630 GAAAAA-TATA
          1 GAAAAATTATA

                      
        640 GAAAAATTAT
          1 GAAAAATTAT

        650 TAGAGACTGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  10   10  0.53
  11    9  0.47

ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26


Consensus pattern (11 bp):   
GAAAAATTATA
Done.