genome.fa.s14962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014962.1 Kokia drynarioides strain JFW-HI SEQ_130006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190410

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7302--7336	18	1.9	18	94	0	61	40	0	0	60	0.97
9364--9620	87	3.0	87	81	7	290	23	13	18	44	1.85
13081--13107	2	13.5	2	100	0	54	48	0	0	51	1.00
15067--15093	2	13.5	2	100	0	54	51	0	0	48	1.00
21325--21354	6	4.8	6	92	8	51	66	0	0	33	0.92
21325--21354	13	2.4	12	94	5	51	66	0	0	33	0.92
34215--34278	24	2.5	24	76	16	67	42	0	4	53	1.22
36451--36634	59	3.2	58	81	6	214	52	5	12	29	1.61
36774--36824	7	7.6	7	78	8	52	70	5	0	23	1.09
36767--37073	20	13.9	20	69	23	133	65	8	0	25	1.20
36774--36824	13	3.8	13	77	12	50	70	5	0	23	1.09
36829--36909	25	3.2	24	70	19	76	60	9	0	29	1.29
36797--37140	50	6.9	50	80	12	404	63	9	0	26	1.24
36918--37143	105	2.2	106	85	7	309	65	8	0	25	1.21
37067--37152	24	3.4	25	71	10	86	62	11	0	25	1.29
43101--43199	51	1.9	51	97	0	189	25	22	20	32	1.98
49254--49442	36	5.2	36	78	2	200	26	15	21	35	1.93
49254--49442	72	2.6	72	83	0	234	26	15	21	35	1.93
49451--49536	36	2.4	36	82	7	104	24	10	24	40	1.86
53617--53657	21	2.0	21	85	0	55	58	2	7	31	1.38
55467--55524	30	1.9	30	86	6	82	46	6	1	44	1.40
67784--67836	21	2.6	19	75	16	52	32	13	22	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71414--71470	28	2.0	28	96	0	105	36	22	3	36	1.72
71852--71987	23	6.0	22	77	10	114	42	20	23	13	1.87
71895--72021	23	5.4	23	83	5	139	44	21	22	11	1.85
71852--71997	69	2.1	68	83	12	181	43	19	23	13	1.86
82316--82359	23	2.0	22	86	13	63	63	9	6	20	1.46
82989--83039	25	2.0	27	84	7	70	50	5	23	19	1.69
86279--86305	2	13.5	2	100	0	54	51	0	0	48	1.00
90591--90621	4	7.8	4	92	0	53	25	3	0	70	1.02
108338--108383	11	4.4	11	86	10	69	52	0	0	47	1.00
109427--109480	18	3.0	16	74	25	54	40	1	0	57	1.09
109428--109489	20	3.2	20	83	16	78	41	3	0	54	1.16
109444--109489	11	4.4	11	78	10	51	43	4	0	52	1.21
109635--109695	30	2.0	30	87	0	86	54	13	22	9	1.68
117960--118002	16	2.7	16	81	0	59	23	0	4	72	1.04
124900--125394	247	2.0	247	98	0	963	38	9	11	40	1.74
127738--127799	30	2.0	31	84	3	81	38	0	37	24	1.56
128459--128506	20	2.3	20	89	3	69	70	20	0	8	1.12
128473--128573	12	8.8	12	70	10	68	68	18	3	8	1.32
128472--128529	23	2.5	22	83	5	71	72	18	1	6	1.16
128498--128582	44	1.9	44	81	9	102	65	17	5	10	1.42
131324--131421	33	3.2	32	65	28	88	19	31	1	47	1.56
131315--131428	57	2.0	57	94	3	203	20	30	1	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131894--131932	19	2.1	19	100	0	78	35	38	10	15	1.81
132556--132611	29	1.9	29	85	0	76	21	5	16	57	1.59
136303--136447	42	3.5	41	77	11	143	26	27	11	35	1.90
136303--136535	41	5.5	42	79	9	190	26	26	10	36	1.89
136843--136884	22	1.9	22	85	9	59	35	11	2	50	1.52
146499--146529	14	2.2	14	94	0	53	29	9	0	61	1.28
147198--147250	23	2.2	24	86	3	72	50	24	13	11	1.73
148487--148547	29	2.1	29	100	0	122	29	9	0	60	1.29
155580--155666	43	2.0	43	95	4	158	29	14	10	44	1.79
155992--156044	26	2.0	26	100	0	106	26	22	26	24	2.00
161145--161213	35	1.9	37	91	5	115	34	11	27	26	1.91
163384--163426	5	7.8	5	82	17	50	20	6	0	72	1.08
165779--165888	27	4.1	27	87	0	148	29	20	18	31	1.96
165893--165969	27	2.9	27	84	0	91	31	15	15	37	1.89
169556--169626	35	2.0	35	97	0	133	43	8	15	32	1.77
170218--170257	21	1.9	21	90	10	64	40	7	2	50	1.44
171120--171172	23	2.4	22	75	6	52	50	0	11	37	1.38
171664--171831	56	2.9	57	78	10	171	25	11	11	52	1.70
172066--172119	26	2.1	26	89	6	83	64	9	5	20	1.42
173685--173791	53	2.0	53	100	0	214	38	7	11	42	1.69
174000--174087	23	3.8	23	74	4	70	29	10	17	43	1.81
175134--175307	87	2.0	87	100	0	348	33	12	25	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182114--182143	2	15.0	2	100	0	60	50	0	0	50	1.00
189390--189686	29	9.8	30	70	20	115	58	3	0	37	1.19
189410--189486	38	2.1	36	83	9	93	64	1	0	33	1.01
189374--189511	56	2.4	58	81	11	151	58	1	1	38	1.16
189453--189667	94	2.3	95	75	12	212	57	3	0	38	1.23
189597--189683	19	4.6	19	72	16	83	59	2	0	37	1.10
189379--189685	10	32.4	9	69	19	123	58	3	0	37	1.21
189685--189719	11	3.3	10	88	11	52	60	11	0	28	1.32
189708--189766	28	2.1	29	84	12	79	59	1	0	38	1.08
189703--189776	38	2.0	37	83	2	94	58	1	0	40	1.07
189706--189769	29	2.3	26	82	15	74	57	1	0	40	1.08

Tables:   1

The End!