Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014964.1 Kokia drynarioides strain JFW-HI SEQ_130008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 148390
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:1690 original size:47 final size:47
Alignment explanation
Indices: 1625--1750 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
1615 TAATGTGACA
* *
1625 TTGTTCACAA-TTTGATTATGTGGCAGTTTATCTCCAAATGTGATGGC
1 TTGTCCACAATTTTGATTAT-TGGCAGTTTATCTACAAATGTGATGGC
* * * * * * *
1672 TTGT-CACATTTTTTATTATTGGCAATATATCTACGATTTTGATGGC
1 TTGTCCACAATTTTGATTATTGGCAGTTTATCTACAAATGTGATGGC
1718 TTGTCCACAATTTTGATTATTGGCAGTTTATCT
1 TTGTCCACAATTTTGATTATTGGCAGTTTATCT
1751 GTGTTACTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 29 0.45
47 36 0.55
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.45
Consensus pattern (47 bp):
TTGTCCACAATTTTGATTATTGGCAGTTTATCTACAAATGTGATGGC
Found at i:2902 original size:11 final size:11
Alignment explanation
Indices: 2880--2913 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
2870 CTACCCATCC
2880 ATATTAATTTTT
1 ATATT-ATTTTT
2892 ATATTATTTTT
1 ATATTATTTTT
2903 ATA-TATTTTT
1 ATATTATTTTT
2913 A
1 A
2914 AATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 9 0.41
12 5 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:3062 original size:30 final size:30
Alignment explanation
Indices: 3026--3090 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
3016 CACCTTAACA
* *
3026 AACAAATGCCTCTAAAATATTAATAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
3056 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
3086 AACAA
1 AACAA
3091 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:3199 original size:24 final size:24
Alignment explanation
Indices: 3161--3206 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
3151 AAATAGGGAG
* * *
3161 AAAACAACAAGAAAATAGCATTAA
1 AAAACAAAAAAAAAAAAGCATTAA
3185 AAAACAAAAAAAAAAAAGCATT
1 AAAACAAAAAAAAAAAAGCATT
3207 TTTTTTTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.72, C:0.11, G:0.07, T:0.11
Consensus pattern (24 bp):
AAAACAAAAAAAAAAAAGCATTAA
Found at i:4871 original size:77 final size:77
Alignment explanation
Indices: 4744--4899 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
4734 TTTCGTATGG
4744 AAAAGCCATTTGGTCATGAAAAAGTTCTTAATACATAATCTAAAATGTAATGGAAGAATGTATTT
1 AAAAGCCATTTGGTCATGAAAAAGTTCTTAATACATAATCTAAAATGTAATGGAAGAATGTATTT
4809 CCCTATTAAAAT
66 CCCTATTAAAAT
4821 AAAAGCCATTTGGTCATGAAAAAGTTCTTAATACATAATCTAAAATGTAATGGAAGAATGTATTT
1 AAAAGCCATTTGGTCATGAAAAAGTTCTTAATACATAATCTAAAATGTAATGGAAGAATGTATTT
4886 CCCTATTAAAAT
66 CCCTATTAAAAT
4898 AA
1 AA
4900 CATCATGTGA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (77 bp):
AAAAGCCATTTGGTCATGAAAAAGTTCTTAATACATAATCTAAAATGTAATGGAAGAATGTATTT
CCCTATTAAAAT
Found at i:8588 original size:23 final size:24
Alignment explanation
Indices: 8544--8588 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
8534 TTGACCCACG
* *
8544 TTCTAATAATTTTTAAACTAAAAT
1 TTCTAATAATCTTTAAAATAAAAT
8568 TTCTAAT-ATCTTTAAAATAAA
1 TTCTAATAATCTTTAAAATAAA
8589 TTAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (24 bp):
TTCTAATAATCTTTAAAATAAAAT
Found at i:10857 original size:25 final size:24
Alignment explanation
Indices: 10795--10848 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
10785 GAAAATAGAA
* *
10795 ATATATATATATAAATATGCAAAT
1 ATATAAATAAATAAATATGCAAAT
10819 ATATAAAATAAATAAATATGCAAAT
1 ATAT-AAATAAATAAATATGCAAAT
10844 ATATA
1 ATATA
10849 GTCACAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
ATATAAATAAATAAATATGCAAAT
Found at i:13265 original size:70 final size:70
Alignment explanation
Indices: 13182--13321 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
13172 AATAAACGAG
*
13182 TATGAACAAAATTTTTATGTTCATTTAATAAACGAACGAACACGAATAAAGGTGAGTTCAGTTCG
1 TATGAACAAAATTTTTATGTTCATTTAATAAACGAACGAACACGAATAAAGGTGAATTCAGTTCG
13247 TTTAT
66 TTTAT
*
13252 TATGAACAAAATTTTTATGTTCATTTAATAAACGAACGAACACGAATAGAGGTGAATTCAGTTCG
1 TATGAACAAAATTTTTATGTTCATTTAATAAACGAACGAACACGAATAAAGGTGAATTCAGTTCG
13317 TTTAT
66 TTTAT
13322 ATTCACGAAC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (70 bp):
TATGAACAAAATTTTTATGTTCATTTAATAAACGAACGAACACGAATAAAGGTGAATTCAGTTCG
TTTAT
Found at i:14275 original size:5 final size:5
Alignment explanation
Indices: 14239--14272 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
14229 CATACCAGAA
* *
14239 AAAGT AAAGT AAAGT AAAGT AAAGC AAAGC AAAG
1 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAG
14273 CAAGCTAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.62, C:0.06, G:0.21, T:0.12
Consensus pattern (5 bp):
AAAGT
Found at i:23167 original size:26 final size:27
Alignment explanation
Indices: 23118--23169 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
23108 GTCAAATAAA
* *
23118 TAAGTATAATAAAATAAATTGATTAAC
1 TAAGTATAAAAAAATAAATAGATTAAC
23145 TAAGTATAAAAAAAT-AATAGATTAA
1 TAAGTATAAAAAAATAAATAGATTAA
23170 AATAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAGTATAAAAAAATAAATAGATTAAC
Found at i:24445 original size:19 final size:19
Alignment explanation
Indices: 24421--24460 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
24411 GTTCTTTTTG
*
24421 CTCTAT-ATTTTTTCTTGTT
1 CTCTATCATTTGTTC-TGTT
24440 CTCTATCATTTGTTCTGTT
1 CTCTATCATTTGTTCTGTT
24459 CT
1 CT
24461 TTGTTGCAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.10, C:0.20, G:0.07, T:0.62
Consensus pattern (19 bp):
CTCTATCATTTGTTCTGTT
Found at i:24597 original size:18 final size:18
Alignment explanation
Indices: 24570--24606 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
24560 AGAAGGGACT
*
24570 TTGGGTAGAGGAACGGTC
1 TTGGGCAGAGGAACGGTC
24588 TTGGGCAGAGGAACGGTC
1 TTGGGCAGAGGAACGGTC
24606 T
1 T
24607 AGGGAGTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.14, G:0.43, T:0.22
Consensus pattern (18 bp):
TTGGGCAGAGGAACGGTC
Found at i:32374 original size:19 final size:18
Alignment explanation
Indices: 32339--32378 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
32329 CAACTTAGTT
*
32339 TTTTATTTAGTTGGTTTTG
1 TTTTATTTAATTGG-TTTG
*
32358 TTTTATTTAATTTGTTTG
1 TTTTATTTAATTGGTTTG
32376 TTT
1 TTT
32379 GTTTGTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.72
Consensus pattern (18 bp):
TTTTATTTAATTGGTTTG
Found at i:32534 original size:24 final size:24
Alignment explanation
Indices: 32505--32560 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
32495 CATGTTCATT
*
32505 ATGTTCATGAACATATAAATGAAC
1 ATGTTCATGAACATATAAACGAAC
* * **
32529 ATGTTCGTGGATGTATAAACGAAC
1 ATGTTCATGAACATATAAACGAAC
32553 ATGTTCAT
1 ATGTTCAT
32561 CCACGAACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (24 bp):
ATGTTCATGAACATATAAACGAAC
Found at i:32593 original size:23 final size:23
Alignment explanation
Indices: 32563--32636 Score: 112
Period size: 23 Copynumber: 3.2 Consensus size: 23
32553 ATGTTCATCC
* *
32563 ACGAACATGTTCGTGAACGTTAA
1 ACGAACATGTTCGCGAACGATAA
32586 ACGAACATGTTCGCGAACGATAA
1 ACGAACATGTTCGCGAACGATAA
* *
32609 AAGAACATGTTCGCGAACGCTAA
1 ACGAACATGTTCGCGAACGATAA
32632 ACGAA
1 ACGAA
32637 TCGAGCCCGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (23 bp):
ACGAACATGTTCGCGAACGATAA
Found at i:39335 original size:5 final size:5
Alignment explanation
Indices: 39325--39353 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
39315 CAAAATATAA
39325 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
39354 ATCAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:39933 original size:18 final size:18
Alignment explanation
Indices: 39912--39949 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
39902 TTAATTTTCG
* *
39912 AATTCGAATTATTTGAAT
1 AATTCGAATAAATTGAAT
39930 AATTCGAATAAATTGAAT
1 AATTCGAATAAATTGAAT
39948 AA
1 AA
39950 AACTATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (18 bp):
AATTCGAATAAATTGAAT
Found at i:39935 original size:24 final size:24
Alignment explanation
Indices: 39882--39938 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
39872 TTTTTTTCGA
39882 AATTCGAATTCGAATCAAATTTAAT
1 AATTCGAATTCGAAT-AAATTTAAT
* *
39907 -TTTCGAATTCGAAT-TATTTGAAT
1 AATTCGAATTCGAATAAATTT-AAT
39930 AATTCGAAT
1 AATTCGAAT
39939 AAATTGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 4 0.15
23 3 0.11
24 20 0.74
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (24 bp):
AATTCGAATTCGAATAAATTTAAT
Found at i:40153 original size:58 final size:58
Alignment explanation
Indices: 40091--40205 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
40081 ATCAACAAAC
*
40091 TAAATCAAAATATTTTTAAACCCAAATATAATTTCATTATTAAAAAACACTCATAAAT
1 TAAATCAAAATATTTTTAAACCCAAATATAATTTCATTACTAAAAAACACTCATAAAT
** ** * * * *
40149 TAAATTTAAATATTTTTAAACTTAAATATAATTTTATTCCTAAATAACACTTATAAA
1 TAAATCAAAATATTTTTAAACCCAAATATAATTTCATTACTAAAAAACACTCATAAA
40206 CAATTCTTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (58 bp):
TAAATCAAAATATTTTTAAACCCAAATATAATTTCATTACTAAAAAACACTCATAAAT
Found at i:42848 original size:11 final size:11
Alignment explanation
Indices: 42832--42857 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
42822 CAACAAAAAC
42832 AAAAAGAAGAG
1 AAAAAGAAGAG
42843 AAAAAGAAGAG
1 AAAAAGAAGAG
42854 AAAA
1 AAAA
42858 GAAAACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAAGAAGAG
Found at i:47243 original size:28 final size:28
Alignment explanation
Indices: 47197--47251 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
47187 TAAGTATTCC
*
47197 TTTCATGTATCATGTATTA-AGTAATTTT
1 TTTCATGTATCATGAATTATA-TAATTTT
* *
47225 TTTCATGTTTTATGAATTATATAATTT
1 TTTCATGTATCATGAATTATATAATTT
47252 ATTAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.56
Consensus pattern (28 bp):
TTTCATGTATCATGAATTATATAATTTT
Found at i:47730 original size:20 final size:20
Alignment explanation
Indices: 47688--47746 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
47678 TAAGATTTTC
***
47688 ATTTTTATAAAATATTGGGAA
1 ATTTTTAT-AAATATTTTAAA
47709 ATTTTTATAAATATTTTAAA
1 ATTTTTATAAATATTTTAAA
*
47729 A-TTTTAAAGAATATTTTA
1 ATTTTTATA-AATATTTTA
47747 TTTTTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 6 0.18
20 19 0.58
21 8 0.24
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATTTTTATAAATATTTTAAA
Found at i:48295 original size:18 final size:18
Alignment explanation
Indices: 48272--48313 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
48262 ATCTTTCATG
48272 TTTTAAGAAATACTT-AAT
1 TTTTAAGAAATA-TTGAAT
*
48290 TTTTAA-AAATATTGCAT
1 TTTTAAGAAATATTGAAT
48307 TTTTAAG
1 TTTTAAG
48314 TAACTATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 13 0.62
18 6 0.29
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (18 bp):
TTTTAAGAAATATTGAAT
Found at i:50056 original size:117 final size:117
Alignment explanation
Indices: 49850--50082 Score: 448
Period size: 117 Copynumber: 2.0 Consensus size: 117
49840 AAAACAAAGA
*
49850 TCTCAGATAAAAAATTAATGCTTCAAAACTTTCCTTTATATGGAAGAATTCCTTAATGAAGAGAG
1 TCTCAGATAAAAAATTAAAGCTTCAAAACTTTCCTTTATATGGAAGAATTCCTTAATGAAGAGAG
49915 GAACTATAGTACTGATATCGGCAATGAATGCAAGCTAGTTGAGCCATAATGG
66 GAACTATAGTACTGATATCGGCAATGAATGCAAGCTAGTTGAGCCATAATGG
49967 TCTCAGATAAAAAATTAAAGCTTCAAAACTTTCCTTTATATGGAAGAATTCCTTAATGAAGAGAG
1 TCTCAGATAAAAAATTAAAGCTTCAAAACTTTCCTTTATATGGAAGAATTCCTTAATGAAGAGAG
*
50032 GAACTATAGTACTGATATCGGCAATGAATGCAAGGTAGTTGAGCCATAATG
66 GAACTATAGTACTGATATCGGCAATGAATGCAAGCTAGTTGAGCCATAATG
50083 ATGTTAATTG
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (117 bp):
TCTCAGATAAAAAATTAAAGCTTCAAAACTTTCCTTTATATGGAAGAATTCCTTAATGAAGAGAG
GAACTATAGTACTGATATCGGCAATGAATGCAAGCTAGTTGAGCCATAATGG
Found at i:50928 original size:38 final size:38
Alignment explanation
Indices: 50885--50980 Score: 192
Period size: 38 Copynumber: 2.5 Consensus size: 38
50875 AATGTTGTAG
50885 ATATTTCTCCTGAACTATATGCATATAAATAATCTAAA
1 ATATTTCTCCTGAACTATATGCATATAAATAATCTAAA
50923 ATATTTCTCCTGAACTATATGCATATAAATAATCTAAA
1 ATATTTCTCCTGAACTATATGCATATAAATAATCTAAA
50961 ATATTTCTCCTGAACTATAT
1 ATATTTCTCCTGAACTATAT
50981 AAAACAGAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (38 bp):
ATATTTCTCCTGAACTATATGCATATAAATAATCTAAA
Found at i:51296 original size:21 final size:21
Alignment explanation
Indices: 51261--51311 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
51251 GTATTATGTA
*
51261 ATTTGGATTTATAAACTTTAT
1 ATTTAGATTTATAAACTTTAT
* * *
51282 GTTTAGATTTTTAAATTTTAT
1 ATTTAGATTTATAAACTTTAT
*
51303 ATTTGGATT
1 ATTTAGATT
51312 ATGCTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (21 bp):
ATTTAGATTTATAAACTTTAT
Found at i:51655 original size:22 final size:22
Alignment explanation
Indices: 51627--51671 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
51617 ATAAAATTAT
51627 TAAATA-TTAAAATAAAATAAAA
1 TAAATATTTAAAA-AAAATAAAA
51649 TAAATATTTTAAAAAAAATAAAA
1 TAAATA-TTTAAAAAAAATAAAA
51672 AATAATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATATTTAAAAAAAATAAAA
Found at i:51678 original size:24 final size:24
Alignment explanation
Indices: 51633--51679 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
51623 TTATTAAATA
*
51633 TTAAAATAAAATAAAATAAATATT
1 TTAAAATAAAATAAAAAAAATATT
51657 TTAAAA-AAAATAAAAAATAATAT
1 TTAAAATAAAATAAAAAA-AATAT
51680 GAGTGAGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
TTAAAATAAAATAAAAAAAATATT
Found at i:53959 original size:13 final size:13
Alignment explanation
Indices: 53941--53965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53931 TTTAGGACGG
53941 TAAATATTTTTAT
1 TAAATATTTTTAT
53954 TAAATATTTTTA
1 TAAATATTTTTA
53966 GAGTCTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATTTTTAT
Found at i:55542 original size:25 final size:26
Alignment explanation
Indices: 55514--55576 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 26
55504 CTGAACTCTA
* *
55514 GCTCGTAAGAGCAATATTCTGT-TTG
1 GCTCGTAAGAGCAATATTCCGTCTGG
*
55539 GCTCGTAAGAGCGATATTCCGTCTGG
1 GCTCGTAAGAGCAATATTCCGTCTGG
55565 GCTCGTAAGAGC
1 GCTCGTAAGAGC
55577 TAAACTCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 20 0.59
26 14 0.41
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (26 bp):
GCTCGTAAGAGCAATATTCCGTCTGG
Found at i:55591 original size:26 final size:26
Alignment explanation
Indices: 55514--55608 Score: 95
Period size: 26 Copynumber: 3.7 Consensus size: 26
55504 CTGAACTCTA
55514 GCTCGTAAGAGC-AATATTCTGTTT-G
1 GCTCGTAAGAGCTAA-ATTCTGTTTGG
* * * *
55539 GCTCGTAAGAGCGATATTCCGTCTGG
1 GCTCGTAAGAGCTAAATTCTGTTTGG
* *
55565 GCTCGTAAGAGCTAAACTCTATTTGG
1 GCTCGTAAGAGCTAAATTCTGTTTGG
* *
55591 GCTTGTATGAGCTAAATT
1 GCTCGTAAGAGCTAAATT
55609 TTTGAAAGAC
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
25 19 0.34
26 37 0.66
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (26 bp):
GCTCGTAAGAGCTAAATTCTGTTTGG
Found at i:58872 original size:30 final size:31
Alignment explanation
Indices: 58838--58966 Score: 124
Period size: 30 Copynumber: 4.3 Consensus size: 31
58828 ATTTATCTAG
58838 ATATTAATAT-GA-AATATTAAATTTAATTTA
1 ATATTAATATAGATAATATTAAA-TTAATTTA
* * * *
58868 ATATTTATCTAGATAGTATT-TATTAATTTA
1 ATATTAATATAGATAATATTAAATTAATTTA
*
58898 ATATTAATAT-GAT-ATATCAAATTTAATTTA
1 ATATTAATATAGATAATATTAAA-TTAATTTA
* * **
58928 ATATTTATCTAGATAATATTTTATTAATTTA
1 ATATTAATATAGATAATATTAAATTAATTTA
58959 ATATTAAT
1 ATATTAAT
58967 GTGATTAATT
Statistics
Matches: 78, Mismatches: 15, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
28 3 0.04
29 4 0.05
30 40 0.51
31 21 0.27
32 10 0.13
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (31 bp):
ATATTAATATAGATAATATTAAATTAATTTA
Found at i:58907 original size:60 final size:61
Alignment explanation
Indices: 58838--58966 Score: 224
Period size: 60 Copynumber: 2.1 Consensus size: 61
58828 ATTTATCTAG
* *
58838 ATATTAATATGAAATATTAAATTTAATTTAATATTTATCTAGATAGTA-TTTATTAATTTA
1 ATATTAATATGAAATATCAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
*
58898 ATATTAATATGATATATCAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
1 ATATTAATATGAAATATCAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
58959 ATATTAAT
1 ATATTAAT
58967 GTGATTAATT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
60 45 0.69
61 20 0.31
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (61 bp):
ATATTAATATGAAATATCAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
Found at i:58991 original size:20 final size:20
Alignment explanation
Indices: 58950--58991 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
58940 ATAATATTTT
*
58950 ATTAATTTAATATTAATGTG
1 ATTAATTTAATACTAATGTG
*
58970 ATTAATTTTAATCCTAAT-TG
1 ATTAA-TTTAATACTAATGTG
58990 AT
1 AT
58992 CTCTCTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
ATTAATTTAATACTAATGTG
Found at i:68599 original size:19 final size:19
Alignment explanation
Indices: 68575--68613 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
68565 TAGATTAAAT
68575 GCATTAAATGCTAATTGAA
1 GCATTAAATGCTAATTGAA
68594 GCATTAAATGCTAATTGAA
1 GCATTAAATGCTAATTGAA
68613 G
1 G
68614 GATAAGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (19 bp):
GCATTAAATGCTAATTGAA
Found at i:74818 original size:26 final size:27
Alignment explanation
Indices: 74782--74834 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
74772 ACACTCTGAG
*
74782 TTCATTGAGGA-ATCATAGACGACAAA
1 TTCATTGAGGATATCACAGACGACAAA
74808 TTCATTGAGGATATCACAGACGACAAA
1 TTCATTGAGGATATCACAGACGACAAA
74835 AGAGACCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.23
Consensus pattern (27 bp):
TTCATTGAGGATATCACAGACGACAAA
Found at i:75748 original size:18 final size:17
Alignment explanation
Indices: 75708--75749 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
75698 TTGTTGGTCA
*
75708 AGAGGAACTTGCTGTTG
1 AGAGGAACTTACTGTTG
75725 AGGAGGAACTTACTGTTAG
1 A-GAGGAACTTACTGTT-G
75744 AGAGGA
1 AGAGGA
75750 GGAAGTCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 19 0.86
19 2 0.09
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.24
Consensus pattern (17 bp):
AGAGGAACTTACTGTTG
Found at i:80981 original size:20 final size:20
Alignment explanation
Indices: 80950--80998 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
80940 ATTTTTAATT
*
80950 TTCTTAATTATTTATTTATTG
1 TTCTTAAATATTTA-TTATTG
*
80971 TT-TTAAATATTTATTCTTG
1 TTCTTAAATATTTATTATTG
80990 TTCTTAAAT
1 TTCTTAAAT
80999 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 16 0.64
21 2 0.08
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (20 bp):
TTCTTAAATATTTATTATTG
Found at i:90512 original size:30 final size:29
Alignment explanation
Indices: 90471--90545 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 29
90461 TCTTGTGTTA
*
90471 TTATATTATATAT-TG-GTGTGGCTTTATT
1 TTATATAATATATATGTGTG-GGCTTTATT
*
90499 TTATGGATAATATATATGTGTGGGCTTTGTT
1 TTAT--ATAATATATATGTGTGGGCTTTATT
90530 TTATATAATATATATG
1 TTATATAATATATATG
90546 CATGGATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 4 0.10
29 12 0.29
30 8 0.20
31 14 0.34
32 3 0.07
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.52
Consensus pattern (29 bp):
TTATATAATATATATGTGTGGGCTTTATT
Found at i:90532 original size:31 final size:31
Alignment explanation
Indices: 90472--90545 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
90462 CTTGTGTTAT
*
90472 TATATTATATAT-TGGTGTGGCTTTATTTTA
1 TATAATATATATGTGGTGTGGCTTTATTTTA
*
90502 TGGATAATATATATGT-GTG-GGCTTTGTTTTA
1 T--ATAATATATATGTGGTGTGGCTTTATTTTA
90533 TATAATATATATG
1 TATAATATATATG
90546 CATGGATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 12 0.31
30 1 0.03
31 12 0.31
32 13 0.33
33 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (31 bp):
TATAATATATATGTGGTGTGGCTTTATTTTA
Found at i:90556 original size:29 final size:32
Alignment explanation
Indices: 90505--90582 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
90495 TATTTTATGG
** *
90505 ATAATATATATGTGTGGGCTTT-GT-TT-TAT
1 ATAATATATATGAATGGACTTTGGTATTATAT
* *
90534 ATAATATATATGCATGGATTTTGGTATTATAT
1 ATAATATATATGAATGGACTTTGGTATTATAT
90566 ATAATATATATGAATGG
1 ATAATATATATGAATGG
90583 GGTTGATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.44
30 2 0.05
31 2 0.05
32 19 0.46
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (32 bp):
ATAATATATATGAATGGACTTTGGTATTATAT
Found at i:95103 original size:30 final size:30
Alignment explanation
Indices: 95069--95196 Score: 168
Period size: 30 Copynumber: 4.3 Consensus size: 30
95059 CATTAAAACT
* *
95069 GGGTCAAATTTGAATTTTTGGAAGCTTTAG
1 GGGTCAAATTTGAATTTTTGGAAACTTTAA
* * *
95099 GGGTCAAATTGGAATTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTTTGGAAACTTTAA
* * *
95129 GGGTCAAA-TTCAGATTTTTAGAAATTTTAA
1 GGGTCAAATTTGA-ATTTTTGGAAACTTTAA
95159 GGGTCAAATTTGAATTTTTGGAAACTTTAA
1 GGGTCAAATTTGAATTTTTGGAAACTTTAA
95189 GGGTCAAA
1 GGGTCAAA
95197 ACAAAATTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 2 0.02
30 80 0.94
31 3 0.04
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTGGAAACTTTAA
Found at i:95223 original size:60 final size:60
Alignment explanation
Indices: 95094--95226 Score: 160
Period size: 60 Copynumber: 2.2 Consensus size: 60
95084 TTTTGGAAGC
* * * * * *
95094 TTTAGGGGTCAAATTGGAATTTTTGGAAAATTTAGGGGTCAAATTCAGATTTTTAGAAAT
1 TTTAGGGGTCAAATTGGAATTTTTGGAAAATTTAAGGGTCAAATACAAATTCTCAGAAAG
* * * *
95154 TTTAAGGGTCAAATTTGAATTTTTGGAAACTTTAAGGGTCAAA-ACAAAATTCTCAGATAG
1 TTTAGGGGTCAAATTGGAATTTTTGGAAAATTTAAGGGTCAAATAC-AAATTCTCAGAAAG
95214 TTTAGGGGTCAAA
1 TTTAGGGGTCAAA
95227 AAATAATTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 1 0.02
60 60 0.98
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (60 bp):
TTTAGGGGTCAAATTGGAATTTTTGGAAAATTTAAGGGTCAAATACAAATTCTCAGAAAG
Found at i:96513 original size:39 final size:39
Alignment explanation
Indices: 96390--96574 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 39
96380 TATAGCTTTA
* *
96390 GGGGTAAAAGATTGGATTGTTTCAATCTGCCC-CATGGTC
1 GGGGTAAAAGATTGAATTGCTTCAATCTGCCCTC-TGGTC
* * * * *
96429 GGGGTAAGAGATTTAATAGTCTTTAATCTGCCCTCTGGTT
1 GGGGTAAAAGATTGAATTG-CTTCAATCTGCCCTCTGGTC
*
96469 AGGGTAAAAGATTGAATTGCTTCAATCTG-CCTCTTGGTC
1 GGGGTAAAAGATTGAATTGCTTCAATCTGCCCTC-TGGTC
* * *
96508 GGGGTAAGAGATCGAA-TGATCTTCAATCTGCCCTCTGGTT
1 GGGGTAAAAGATTGAATTG--CTTCAATCTGCCCTCTGGTC
* * *
96548 AGGGT-AAAGATTGTATTGCTTTAATCT
1 GGGGTAAAAGATTGAATTGCTTCAATCT
96575 ACCTCATGAT
Statistics
Matches: 117, Mismatches: 22, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
38 14 0.12
39 48 0.41
40 50 0.43
41 5 0.04
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (39 bp):
GGGGTAAAAGATTGAATTGCTTCAATCTGCCCTCTGGTC
Found at i:96536 original size:79 final size:79
Alignment explanation
Indices: 96391--96582 Score: 271
Period size: 79 Copynumber: 2.4 Consensus size: 79
96381 ATAGCTTTAG
* * * ** *
96391 GGGTAAAAGATTGGATTGTTTCAATCTGCCCCATGGTCGGGGTAAGAGATTTAATAGTCTTTAAT
1 GGGTAAAAGATTGAATTGCTTCAATCTGCCTCATGGTCGGGGTAAGAGATCGAATAGTCTTCAAT
96456 CTGCCCTCTGGTTA
66 CTGCCCTCTGGTTA
*
96470 GGGTAAAAGATTGAATTGCTTCAATCTGCCTCTTGGTCGGGGTAAGAGATCGAAT-GATCTTCAA
1 GGGTAAAAGATTGAATTGCTTCAATCTGCCTCATGGTCGGGGTAAGAGATCGAATAG-TCTTCAA
96534 TCTGCCCTCTGGTTA
65 TCTGCCCTCTGGTTA
* * *
96549 GGGT-AAAGATTGTATTGCTTTAATCTACCTCATG
1 GGGTAAAAGATTGAATTGCTTCAATCTGCCTCATG
96583 ATTAAAATAA
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
78 27 0.27
79 74 0.73
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (79 bp):
GGGTAAAAGATTGAATTGCTTCAATCTGCCTCATGGTCGGGGTAAGAGATCGAATAGTCTTCAAT
CTGCCCTCTGGTTA
Found at i:108304 original size:29 final size:29
Alignment explanation
Indices: 108262--108395 Score: 128
Period size: 30 Copynumber: 4.5 Consensus size: 29
108252 TTAAAACCAA
**
108262 GTCAAATTCT-AATTTTTGGAAGCTTTTGG
1 GTCAAATT-TGAATTTTTGGAAAATTTTGG
* * *
108291 GTCAAATTGGAATTTTTAGAAAATTTAGGG
1 GTCAAATTTGAATTTTTGGAAAATTT-TGG
* *
108321 GTCAAATTAGAATTTTTGGAAAATTTAGAG
1 GTCAAATTTGAATTTTTGGAAAATTTTG-G
* *
108351 GTGAAATTTAAATTTTTGG-AAATTTTAGG
1 GTCAAATTTGAATTTTTGGAAAATTTT-GG
108380 GATCAAATTTGAATTT
1 G-TCAAATTTGAATTT
108396 CTAGAAACTT
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
29 30 0.35
30 56 0.65
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.41
Consensus pattern (29 bp):
GTCAAATTTGAATTTTTGGAAAATTTTGG
Found at i:108325 original size:30 final size:30
Alignment explanation
Indices: 108289--108412 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 30
108279 GGAAGCTTTT
*
108289 GGGTCAAATTGGAATTTTTAGAAAATTTAG
1 GGGTCAAATTTGAATTTTTAGAAAATTTAG
* *
108319 GGGTCAAATTAGAATTTTTGGAAAATTTAG
1 GGGTCAAATTTGAATTTTTAGAAAATTTAG
* * * * *
108349 AGGTGAAATTTAAATTTTTGGAAATTTTAG
1 GGGTCAAATTTGAATTTTTAGAAAATTTAG
* * * *
108379 GGATCAAATTTGAATTTCTAGAAACTTTGG
1 GGGTCAAATTTGAATTTTTAGAAAATTTAG
108409 GGGT
1 GGGT
108413 TAAAACATAT
Statistics
Matches: 78, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTAGAAAATTTAG
Found at i:110321 original size:2 final size:2
Alignment explanation
Indices: 110314--110358 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
110304 GTATAATAAT
* *
110314 AC AC AC AC AC AC AC AT AC AC AC AC AC AC GC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
110356 AC A
1 AC A
110359 TATATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.47, G:0.02, T:0.02
Consensus pattern (2 bp):
AC
Found at i:110979 original size:34 final size:34
Alignment explanation
Indices: 110941--111011 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
110931 ATGACACACG
**
110941 AAAATGAAATGACAATGGAAATGTAGTGAA-AATT
1 AAAATGAAATGACAAAAGAAATGTAGT-AATAATT
* *
110975 AAAATGCAATGACAAAAGAAATGTGGTAATAATT
1 AAAATGAAATGACAAAAGAAATGTAGTAATAATT
111009 AAA
1 AAA
111012 TTACAGCTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 2 0.06
34 30 0.94
ACGTcount: A:0.55, C:0.04, G:0.18, T:0.23
Consensus pattern (34 bp):
AAAATGAAATGACAAAAGAAATGTAGTAATAATT
Found at i:133927 original size:21 final size:19
Alignment explanation
Indices: 133893--133937 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
133883 TGCATTTTAC
133893 ATTTTCTTTTACCTTTTCA
1 ATTTTCTTTTACCTTTTCA
*
133912 CTTTTACTTGTTACCTTTTCA
1 ATTTT-CTT-TTACCTTTTCA
133933 ATTTT
1 ATTTT
133938 TTGTAGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 3 0.14
21 15 0.68
ACGTcount: A:0.16, C:0.20, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTCTTTTACCTTTTCA
Found at i:135578 original size:2 final size:2
Alignment explanation
Indices: 135571--135610 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
135561 TTGCATTTCC
135571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135611 TAGTGTCAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:145332 original size:15 final size:15
Alignment explanation
Indices: 145312--145342 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
145302 TTTGATTGTA
145312 ACCTAAATAACCATC
1 ACCTAAATAACCATC
145327 ACCTAAATAACCATC
1 ACCTAAATAACCATC
145342 A
1 A
145343 AGGAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.19
Consensus pattern (15 bp):
ACCTAAATAACCATC
Done.