genome.fa.s14966.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014966.1 Kokia drynarioides strain JFW-HI SEQ_130010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  330293

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2264--2288	6	4.2	6	100	0	50	16	16	32	36	1.90
2686--2847	62	2.7	62	83	6	192	41	9	14	34	1.77
28031--28057	7	3.9	7	100	0	54	29	0	11	59	1.32
30406--30464	17	3.6	17	69	15	52	55	1	1	40	1.20
37191--37282	44	2.1	44	100	0	184	50	2	6	41	1.40
37514--37580	20	3.3	20	69	24	52	49	0	1	49	1.10
51080--51179	49	2.0	49	100	0	200	35	18	15	32	1.91
62813--62838	6	4.3	6	100	0	52	69	0	15	15	1.20
66792--66836	21	2.0	21	83	8	54	42	8	4	44	1.56
81178--81426	124	2.0	124	98	0	480	40	22	12	24	1.89
99987--100012	2	13.0	2	100	0	52	50	0	0	50	1.00
101425--101466	21	2.0	21	85	0	57	26	26	11	35	1.91
101493--101594	53	1.9	53	86	5	145	51	16	14	16	1.76
107221--107411	23	8.5	23	70	20	127	44	20	24	10	1.83
116956--117006	26	2.0	26	88	7	77	41	0	7	50	1.31
117507--117550	22	2.1	22	87	8	65	31	4	2	61	1.28
124488--124573	29	3.0	29	81	5	95	43	0	2	54	1.13
124490--124575	23	3.8	23	77	6	77	45	0	2	52	1.13
124508--124543	11	3.2	11	92	4	54	47	0	2	50	1.15
124490--124559	17	4.0	18	81	5	72	44	0	2	52	1.15
124490--124559	6	12.0	6	77	6	72	44	0	2	52	1.15
125248--125313	3	22.0	3	73	11	55	60	1	1	36	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126481--126721	29	8.1	29	75	11	161	36	26	4	31	1.77
126471--126677	29	7.0	29	76	11	170	35	28	3	32	1.75
126471--126721	60	4.2	58	80	8	238	36	27	5	31	1.79
126488--126775	60	4.8	58	79	8	206	35	27	4	32	1.76
126609--126800	59	3.2	59	74	7	165	33	28	5	31	1.81
130770--130802	6	5.5	6	100	0	66	33	0	66	0	0.92
131008--131037	2	15.0	2	100	0	60	50	0	50	0	1.00
134488--134532	22	2.1	21	83	4	54	71	4	2	22	1.15
134509--134570	20	3.2	20	76	15	60	62	3	1	32	1.20
134519--134570	9	5.6	9	76	15	52	63	1	0	34	1.06
136023--136064	14	3.0	14	79	10	50	52	0	4	42	1.22
151093--151131	9	4.2	9	86	3	51	48	12	10	28	1.74
151095--151131	18	2.1	18	94	0	65	48	13	10	27	1.75
151521--151549	12	2.3	13	94	5	51	72	0	6	20	1.07
157984--158030	18	2.5	19	80	13	62	57	0	0	42	0.98
158983--159037	25	2.4	22	78	21	60	54	1	1	41	1.21
159280--159319	2	20.0	2	100	0	80	50	0	0	50	1.00
160647--160671	12	2.1	12	100	0	50	0	8	0	92	0.40
166648--166780	26	4.9	26	70	17	117	43	12	14	29	1.82
166648--166727	31	2.8	30	90	9	123	46	12	15	26	1.81
166956--166989	16	2.1	16	94	0	59	29	0	0	70	0.87
167214--167252	16	2.4	16	95	4	69	33	17	0	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178490--178542	25	2.1	25	82	6	63	11	18	1	67	1.30
198031--198167	10	15.4	9	69	20	67	33	1	2	62	1.16
198029--198078	14	3.1	15	78	21	57	28	0	0	72	0.86
199076--199114	18	2.1	18	85	4	51	38	5	0	56	1.22
201003--201030	7	4.0	7	100	0	56	28	0	0	71	0.86
201016--201092	29	2.6	29	82	13	95	35	0	2	62	1.09
214744--214829	38	2.3	38	76	15	88	41	4	1	52	1.30
214871--214928	15	3.6	15	70	17	53	50	3	1	44	1.29
215282--215319	19	2.0	20	85	10	53	50	5	2	42	1.39
215773--215820	16	3.0	15	82	11	51	39	0	0	60	0.97
215774--215817	18	2.6	16	82	10	52	38	0	0	61	0.96
215894--215926	17	2.1	17	88	11	52	66	0	0	33	0.92
225656--225725	19	3.6	19	82	7	79	55	7	0	37	1.27
225656--225737	39	2.0	41	82	15	100	52	6	0	41	1.26
226476--226514	6	6.5	6	100	0	78	66	17	15	0	1.25
236598--236630	2	16.5	2	100	0	66	48	0	0	51	1.00
247004--247042	21	1.9	21	85	15	55	51	20	0	28	1.48
252160--252193	17	1.9	18	88	5	52	55	0	0	44	0.99
257365--257393	2	14.5	2	100	0	58	48	0	0	51	1.00
261817--261853	18	2.0	19	85	15	51	29	27	10	32	1.90
266625--266705	31	2.7	31	83	10	107	29	11	6	53	1.61
284451--284642	56	3.5	55	77	9	187	31	14	8	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284836--285197	58	6.3	57	74	7	304	39	9	17	33	1.82
284793--285144	114	3.1	114	80	10	371	38	9	17	33	1.83
288608--288650	19	2.3	19	96	4	79	25	23	0	51	1.49
289556--289637	37	2.3	35	85	4	101	36	4	3	54	1.39
290338--290394	30	1.9	30	85	0	78	54	12	1	31	1.48
291470--291669	59	3.4	58	86	5	278	32	32	5	30	1.80
291470--291679	29	7.2	27	75	16	113	32	31	6	30	1.82
291703--291778	28	2.5	31	75	12	77	27	22	5	44	1.74
295435--295496	2	31.0	2	100	0	124	50	0	0	50	1.00
295807--296049	84	2.9	83	83	5	310	38	6	11	44	1.66
297451--297477	13	2.1	13	100	0	54	22	25	22	29	1.99
314535--314566	4	8.0	4	100	0	64	0	75	0	25	0.81
316840--316899	25	2.4	25	88	0	84	36	1	10	51	1.45
319348--319714	29	12.6	28	75	11	217	34	3	26	35	1.73
319375--319705	57	5.7	57	79	8	305	34	2	27	35	1.69
319435--319729	29	10.2	28	77	8	245	34	1	27	36	1.67
319607--319729	59	2.1	59	83	7	153	39	1	21	37	1.64
325590--325641	21	2.4	22	80	3	61	67	1	1	28	1.12
326812--326848	2	18.5	2	94	0	65	45	0	0	54	1.00
326814--326874	6	10.3	6	84	10	54	37	3	0	59	1.14
328786--328871	17	4.8	18	75	13	72	39	2	6	51	1.42
329588--329614	3	9.0	3	100	0	54	66	0	0	33	0.92

Tables:   1

The End!