genome.fa.s14967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014967.1 Kokia drynarioides strain JFW-HI SEQ_130011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148366

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944--1036	40	2.4	39	80	8	102	20	22	29	27	1.98
8396--8948	202	2.7	205	78	6	548	32	23	11	32	1.90
9239--9263	12	2.1	12	100	0	50	0	0	8	92	0.40
15777--15985	30	7.1	30	79	7	216	36	26	2	34	1.70
15789--15985	58	3.3	58	84	7	247	36	25	2	35	1.70
27784--27851	34	2.0	34	94	0	118	30	16	10	42	1.81
30227--30267	16	2.5	17	88	4	57	53	7	4	34	1.50
43063--43111	18	2.7	18	78	12	55	32	2	0	65	1.04
46884--46936	26	2.0	26	96	0	97	54	11	3	30	1.53
48260--48300	21	2.0	21	100	0	82	4	51	4	39	1.45
60328--60390	30	2.1	29	85	8	83	33	6	22	38	1.79
62525--62780	41	6.5	41	73	12	223	32	21	28	17	1.96
62527--62658	70	1.9	70	82	6	169	31	21	28	18	1.97
62755--62807	27	2.0	26	85	3	70	26	16	33	20	1.94
62714--62849	68	2.0	67	97	1	254	31	16	30	20	1.95
62783--62986	41	5.0	41	83	3	239	32	20	29	17	1.95
62527--62973	191	2.3	192	83	3	560	31	20	29	18	1.96
62783--62986	82	2.5	82	85	2	266	32	20	29	17	1.95
71379--71418	19	2.2	18	86	13	55	35	0	5	60	1.19
77610--77642	15	2.3	15	89	5	50	36	0	0	63	0.95
79820--79845	3	8.7	3	100	0	52	0	0	34	65	0.93
84930--84967	10	3.9	10	82	3	51	23	7	23	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91823--91865	19	2.3	19	84	8	52	58	2	0	39	1.11
93024--93064	20	2.0	20	90	0	64	41	7	12	39	1.70
95035--95076	17	2.4	17	92	4	66	23	26	2	47	1.64
102166--102223	30	1.9	31	86	10	84	65	5	6	22	1.37
102164--102241	30	2.5	30	77	10	77	66	5	5	23	1.32
102546--102584	20	2.0	20	85	10	53	43	15	7	33	1.75
105274--105358	6	14.3	6	70	16	61	40	4	2	52	1.35
105265--105366	37	2.9	35	80	11	111	41	3	2	51	1.35
105274--105366	17	5.4	16	75	14	87	40	4	3	51	1.38
107549--107633	6	14.3	6	70	16	61	40	4	2	52	1.35
107540--107641	37	2.9	35	80	11	111	41	3	2	51	1.35
107549--107641	17	5.4	16	75	14	87	40	4	3	51	1.38
109476--109659	29	6.2	30	75	10	173	31	28	4	35	1.78
109454--109659	59	3.5	59	78	11	213	32	28	4	34	1.78
110789--110848	21	2.9	21	72	20	54	41	15	3	40	1.63
111724--111759	3	12.0	3	93	0	63	63	0	0	36	0.94
113325--113367	18	2.4	18	80	7	52	44	2	0	53	1.13
117033--117084	27	1.9	26	81	14	61	28	3	1	65	1.21
118017--118071	24	2.3	24	90	0	83	52	9	10	27	1.66
118027--118077	24	2.1	24	92	0	84	58	9	9	21	1.58
121261--121307	21	2.3	20	82	10	51	31	6	0	61	1.21
122277--122338	32	2.0	32	87	3	90	50	12	1	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125915--125947	3	11.0	3	100	0	66	33	0	33	33	1.58
126412--126458	24	2.0	23	87	4	67	31	2	0	65	1.04
127545--127685	59	2.4	59	91	2	237	17	21	12	48	1.79
133074--133117	18	2.4	17	85	11	52	50	4	2	43	1.35
136606--136645	21	2.0	21	90	5	64	57	0	10	32	1.32
136636--136702	23	3.0	23	82	2	73	19	1	17	61	1.43
136673--136717	22	2.0	22	86	0	63	22	2	13	62	1.42
136974--137007	9	3.8	9	88	0	50	35	0	0	64	0.94
137104--137175	31	2.3	31	80	4	92	58	4	13	23	1.53
137119--137187	31	2.2	31	87	5	95	59	4	11	24	1.50
137940--138068	60	2.1	60	81	7	145	34	10	18	36	1.85
138788--138890	17	6.2	17	70	14	72	20	33	0	44	1.58
138800--138892	34	2.7	34	86	6	134	19	33	1	46	1.57
146054--146089	18	1.9	19	88	5	56	47	5	5	41	1.50

Tables:   1

The End!