genome.fa.s14973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014973.1 Kokia drynarioides strain JFW-HI SEQ_130017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  256115

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137--284	23	6.4	23	80	11	110	11	24	22	41	1.87
11477--11533	27	2.1	27	86	0	78	38	0	3	57	1.16
12586--12711	55	2.2	57	88	4	193	50	17	7	24	1.73
12701--12756	18	3.2	18	71	19	64	50	23	8	17	1.74
12598--12708	58	2.0	55	91	5	150	49	18	9	23	1.75
12659--12779	34	3.4	34	87	6	163	47	21	9	21	1.78
12719--12772	16	3.2	16	71	19	56	48	24	7	20	1.75
12765--12804	21	2.0	21	95	5	73	52	12	5	30	1.60
12833--12954	55	2.2	55	86	1	165	50	18	7	23	1.71
20295--20346	4	13.0	4	95	0	68	25	17	25	32	1.97
23308--23355	4	12.0	4	95	0	87	50	27	0	22	1.50
26083--26129	24	2.0	23	83	4	58	34	4	6	55	1.45
28607--28647	19	2.1	20	90	4	66	29	24	17	29	1.97
28771--28815	22	2.0	23	82	4	56	62	6	0	31	1.21
28742--28817	31	2.4	30	79	16	84	60	6	0	32	1.22
47224--47261	19	2.1	19	85	5	51	65	2	0	31	1.06
47224--47265	22	1.9	22	85	9	59	64	2	0	33	1.07
49514--49578	30	2.2	30	88	0	94	56	7	0	35	1.28
49762--49814	22	2.3	23	75	12	56	32	0	5	62	1.19
50005--50056	24	2.3	21	87	9	68	51	5	1	40	1.37
56312--56376	31	2.3	27	78	19	69	43	10	6	40	1.65
56994--57028	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57382--57420	18	2.2	18	90	4	62	66	5	0	28	1.12
64009--64039	16	2.0	16	93	6	55	25	0	6	67	1.14
66208--66233	2	13.0	2	100	0	52	0	50	0	50	1.00
67724--67757	16	2.1	16	88	0	50	32	0	0	67	0.91
71954--72077	44	2.9	43	75	14	121	68	16	5	9	1.36
76919--77089	94	1.8	94	89	0	270	32	14	16	35	1.90
77013--77227	109	2.0	104	82	4	259	35	15	13	34	1.87
79807--79842	4	9.0	4	93	0	63	0	27	0	72	0.85
97675--97713	19	2.1	18	85	4	51	35	2	10	51	1.50
112736--112859	62	2.0	62	100	0	248	33	11	9	45	1.73
115453--115496	14	2.8	16	80	16	56	52	0	0	47	1.00
122685--122725	20	2.0	22	85	9	59	41	2	0	56	1.13
143770--143858	42	2.1	42	89	0	133	34	14	12	38	1.84
147799--147829	15	2.1	15	93	0	53	61	0	3	35	1.12
148554--148836	145	2.0	144	82	3	354	36	9	15	38	1.80
151233--151321	42	2.1	42	89	0	133	34	14	12	38	1.84
155262--155292	15	2.1	15	93	0	53	61	0	3	35	1.12
156017--156299	145	2.0	144	82	3	354	36	9	15	38	1.80
159284--159322	20	2.0	20	84	0	51	48	17	2	30	1.61
159304--159362	31	1.9	31	85	0	82	45	18	5	30	1.71
163700--163724	13	1.9	13	100	0	50	32	0	12	56	1.36
165769--165813	21	2.3	19	84	7	54	75	6	2	15	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168612--168647	18	1.9	19	88	5	56	75	0	5	19	1.00
171932--171966	2	17.5	2	87	0	52	45	0	5	48	1.26
181582--181612	14	2.2	14	94	0	53	51	16	0	32	1.44
184316--184349	2	17.0	2	87	0	50	44	2	52	0	1.16
186294--186341	23	2.0	24	84	4	62	27	14	14	43	1.84
187175--187214	15	2.7	15	85	11	55	0	22	5	72	1.04
187176--187216	16	2.6	16	88	7	57	0	21	4	73	1.02
187309--187382	33	2.2	33	87	0	112	48	4	13	33	1.61
198349--198382	18	1.9	17	88	5	50	47	0	5	47	1.26
207663--207745	31	2.7	30	80	8	96	50	2	2	44	1.28
207975--208018	15	2.8	17	74	19	51	45	0	0	54	0.99
207960--208017	25	2.3	26	78	3	64	46	1	0	51	1.11
209219--209247	3	9.7	3	100	0	58	68	31	0	0	0.89
209252--209304	27	2.0	27	84	0	70	62	1	1	33	1.17
214363--214407	2	22.5	2	90	0	72	51	4	0	44	1.21
217560--217990	196	2.2	193	81	9	495	45	15	11	28	1.80
217880--218113	130	1.8	130	85	2	337	42	17	13	26	1.87
221402--221428	2	13.5	2	100	0	54	51	0	0	48	1.00
221579--221613	12	2.9	12	91	8	54	31	0	2	65	1.07
221601--221653	27	2.1	24	86	10	70	30	0	7	62	1.23
222822--222870	2	24.0	2	95	4	89	48	0	2	48	1.12
223425--223484	31	1.9	31	89	0	93	33	8	11	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224264--224298	2	17.5	2	100	0	70	51	0	0	48	1.00
225828--225872	23	2.0	23	81	0	54	60	11	17	11	1.59
226746--226801	29	1.9	29	85	0	76	37	14	8	39	1.77
229207--229927	197	3.7	197	87	2	1011	36	19	15	28	1.92
230962--230999	18	2.0	19	85	10	51	55	0	0	44	0.99
232177--232221	23	2.0	23	86	0	63	62	15	2	20	1.43
245145--245208	31	2.1	31	96	0	119	25	10	9	54	1.65
246775--246834	27	2.2	27	71	23	63	50	1	0	48	1.11
247461--247491	3	10.7	3	93	6	55	32	32	0	35	1.58
251039--251155	29	4.3	27	66	27	70	36	1	2	58	1.22
251034--251189	79	2.0	78	97	1	294	37	1	3	56	1.29

Tables:   1

The End!