genome.fa.s14980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014980.1 Kokia drynarioides strain JFW-HI SEQ_130024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191948

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318--1352	11	3.2	11	87	0	52	54	2	0	42	1.15
1293--1359	17	3.7	18	75	17	59	50	2	1	44	1.26
1293--1384	17	5.7	16	71	16	57	53	2	1	43	1.20
1316--1384	34	2.0	35	91	5	113	53	2	0	43	1.15
3628--3672	12	3.8	12	82	5	65	22	15	22	40	1.91
3605--3695	23	3.8	23	86	7	103	25	13	20	40	1.89
3660--3711	23	2.3	23	83	6	61	40	11	15	32	1.83
5994--6044	18	2.8	19	80	14	54	66	0	1	31	1.03
6010--6045	18	2.0	18	89	10	56	66	0	0	33	0.92
6975--7031	29	1.9	30	89	3	89	63	0	7	29	1.21
7438--7475	19	1.9	19	85	15	51	50	5	0	44	1.24
7726--7779	9	6.0	9	79	14	58	61	0	3	35	1.14
9033--9064	13	2.5	13	94	0	55	50	6	28	15	1.68
9270--9402	9	14.2	9	71	19	78	29	2	1	66	1.12
9274--9402	37	3.5	36	79	11	145	27	2	1	68	1.11
9270--9373	10	10.8	10	74	20	64	28	1	1	67	1.12
9275--9418	66	2.2	66	82	7	168	29	2	2	65	1.15
10898--10932	17	1.9	19	88	11	56	2	28	0	68	1.04
17564--17725	59	2.7	60	85	8	217	45	10	19	25	1.82
17619--17725	31	3.5	31	75	12	123	45	9	18	26	1.79
18276--18346	35	2.1	34	83	2	88	40	1	4	53	1.29
18276--18346	17	4.1	17	89	3	88	40	1	4	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20087--20240	30	5.2	29	72	15	111	36	22	2	38	1.68
20111--20279	88	1.9	88	82	4	209	36	21	3	38	1.71
20158--20427	58	4.6	58	77	7	215	34	22	4	39	1.73
20291--20427	31	4.6	28	77	6	130	35	21	2	40	1.68
20296--20456	88	1.8	87	79	12	186	34	21	3	40	1.71
27682--27713	16	2.0	16	100	0	64	31	18	31	18	1.95
32395--32957	39	14.4	38	69	16	298	23	30	21	25	1.99
32395--32957	78	7.2	78	81	1	626	23	30	21	25	1.99
33448--33492	17	2.6	17	92	0	81	33	0	6	60	1.23
33455--33521	29	2.3	29	84	2	82	35	1	4	58	1.28
33472--33504	12	2.8	12	90	4	50	33	0	3	63	1.10
33422--33522	17	6.1	17	77	12	77	39	1	4	53	1.34
34589--34648	21	2.9	21	82	0	75	33	23	15	28	1.94
38876--39011	36	3.8	36	95	0	245	22	25	16	35	1.95
56981--57023	17	2.5	17	88	7	61	60	16	9	13	1.58
68679--68708	7	4.3	7	91	0	51	40	43	3	13	1.60
69616--69662	23	2.0	23	91	0	76	44	21	4	29	1.71
70038--70067	14	2.1	14	100	0	60	36	6	26	30	1.82
77473--77802	164	2.0	164	98	0	642	33	13	14	38	1.85
101872--101959	46	1.9	46	85	0	122	27	2	11	59	1.44
106199--106350	76	2.0	75	97	1	286	23	25	20	29	1.98
114999--115041	21	2.0	21	86	0	59	62	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119755--120221	147	3.2	143	83	7	572	41	2	10	45	1.52
120173--120221	23	2.2	23	85	3	64	34	0	10	55	1.34
120768--120818	16	3.1	17	86	8	70	21	5	3	68	1.27
129732--129760	10	2.9	10	100	0	58	68	10	10	10	1.39
132002--132048	24	2.0	24	91	0	76	25	10	6	57	1.56
132002--132064	24	2.6	24	82	0	63	25	12	9	52	1.69
145318--145356	18	2.2	18	90	0	60	38	23	15	23	1.92
150902--150929	2	14.0	2	100	0	56	50	0	0	50	1.00
160575--160606	3	10.7	3	100	0	64	68	0	0	31	0.90
161468--161500	17	1.9	17	88	11	50	48	0	3	48	1.17
163774--163853	26	3.1	26	88	0	115	27	3	10	58	1.47
166886--166912	7	3.9	7	100	0	54	0	0	25	74	0.83
167285--167328	23	2.0	23	95	4	81	59	15	0	25	1.37
175338--175423	26	3.3	26	83	0	118	36	16	20	26	1.94
176133--176246	55	2.1	55	80	3	122	28	21	22	26	1.99
176145--176261	55	2.1	55	87	0	162	26	23	24	24	2.00
179148--179218	36	2.0	36	88	0	106	26	12	21	39	1.89
179218--179317	37	2.7	37	90	0	155	26	13	28	33	1.93
190583--190659	18	4.3	18	73	6	75	22	20	23	33	1.97

Tables:   1

The End!