genome.fa.s14983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014983.1 Kokia drynarioides strain JFW-HI SEQ_130027, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  486004

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--51	20	2.4	19	85	7	65	63	2	0	34	1.07
103--160	4	14.0	4	79	13	55	0	31	0	68	0.89
102--159	9	6.3	9	73	11	55	0	29	0	70	0.87
101--161	21	3.0	20	78	4	68	0	31	0	68	0.89
2058--2103	24	1.9	24	81	0	56	41	8	4	45	1.55
2569--2615	23	2.0	23	84	8	60	36	0	0	63	0.94
8309--8357	3	15.3	3	85	8	62	61	6	32	0	1.21
10904--10941	6	6.3	6	100	0	76	0	34	15	50	1.45
17947--18002	25	2.2	26	84	12	73	23	10	7	58	1.56
41461--41494	17	2.0	17	94	0	59	67	0	0	32	0.91
41595--41649	18	3.0	18	79	10	67	40	1	0	58	1.09
41897--41934	20	1.9	20	88	0	58	34	5	0	60	1.19
42067--42137	19	3.7	19	72	10	65	28	8	4	59	1.46
58898--58931	9	3.7	9	88	4	50	23	0	0	76	0.79
58897--58933	10	3.8	10	92	7	67	24	0	0	75	0.80
58897--58937	19	2.2	18	95	4	73	21	0	0	78	0.76
63045--63105	18	3.5	17	75	6	59	40	1	1	55	1.19
63082--63136	21	2.8	20	74	17	60	27	1	5	65	1.25
63081--63132	27	1.9	27	84	0	68	26	1	5	65	1.26
63082--63139	19	2.9	19	80	14	73	27	1	5	65	1.23
70385--70464	29	2.7	30	81	13	85	31	10	13	45	1.77
70654--70720	31	2.3	27	78	14	71	41	13	8	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71767--71815	21	2.3	22	85	3	64	32	0	4	63	1.13
73763--73803	21	2.0	21	85	9	57	53	2	4	39	1.35
73974--74002	13	2.1	14	93	6	51	44	0	0	55	0.99
74638--74681	22	2.0	22	86	8	63	13	9	4	72	1.24
83482--83720	119	2.0	120	96	0	444	45	12	21	20	1.84
85133--85526	210	1.8	211	87	4	583	45	11	9	33	1.73
92091--92133	18	2.4	18	88	7	61	48	0	2	48	1.14
94307--94342	2	18.0	2	94	0	63	52	0	0	47	1.00
117633--117672	19	2.1	19	95	0	71	27	22	10	40	1.86
125561--125656	25	3.6	25	70	16	68	53	3	2	41	1.28
125570--125725	54	2.7	57	78	14	137	53	3	3	39	1.33
128893--128930	18	2.1	19	85	5	51	65	0	7	26	1.19
129289--129353	30	2.1	30	85	2	85	33	27	6	32	1.82
131128--131194	28	2.5	27	81	11	75	31	2	1	64	1.18
131127--131211	27	3.1	28	75	14	70	32	2	2	62	1.21
140995--141036	13	3.2	13	80	16	50	42	19	9	28	1.82
141107--141201	48	2.0	48	89	0	145	13	37	15	32	1.87
148864--148924	31	2.0	31	87	6	88	34	11	11	42	1.77
153863--153904	21	2.0	21	86	9	59	47	2	0	50	1.14
160881--160914	7	4.9	7	100	0	68	0	0	11	88	0.52
162542--162571	15	1.9	16	93	6	53	66	0	3	30	1.07
166019--166078	28	2.1	28	85	11	79	33	3	8	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166022--166088	30	2.3	31	79	10	77	35	2	8	52	1.48
167547--167621	36	2.1	35	83	11	91	37	1	1	60	1.14
172869--172920	24	2.2	24	89	6	79	42	5	1	50	1.37
174006--174046	22	1.9	22	85	14	59	46	14	9	29	1.77
174104--174141	20	1.9	20	88	0	58	44	13	2	39	1.57
176796--177587	273	2.9	275	95	0	1394	23	22	20	33	1.97
176796--177587	137	5.8	137	95	1	1383	23	22	20	33	1.97
178182--178267	30	2.9	27	80	14	82	44	16	6	32	1.74
187327--187371	18	2.5	17	82	10	54	33	4	0	62	1.15
195689--195738	15	3.2	15	88	5	64	4	32	0	64	1.12
195699--195738	17	2.3	18	95	4	73	5	35	0	60	1.19
204104--204158	21	2.5	21	78	21	60	67	0	30	1	1.01
204297--204671	175	2.2	162	89	6	556	34	0	16	49	1.50
204515--204539	12	2.1	12	100	0	50	48	0	0	52	1.00
204351--204666	175	1.8	172	96	2	587	33	0	13	52	1.46
205484--205548	4	16.0	4	73	9	51	1	30	1	66	1.10
208351--208383	15	2.1	16	88	5	50	42	0	3	54	1.15
225051--225127	38	2.0	39	92	2	129	28	1	11	58	1.41
231667--231754	44	2.0	44	100	0	176	34	11	18	36	1.86
233726--233750	12	2.1	12	100	0	50	48	0	36	16	1.46
240914--240951	20	1.9	20	84	10	51	57	0	5	36	1.21
241607--241640	12	2.8	12	90	0	50	14	55	8	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241588--241626	18	2.2	18	90	0	60	5	58	12	23	1.54
244188--244234	23	2.0	23	91	0	76	21	2	19	57	1.51
249585--249643	29	2.1	27	87	6	82	45	10	1	42	1.48
251301--251325	2	12.5	2	100	0	50	52	0	0	48	1.00
257320--257348	14	2.1	14	100	0	58	13	20	27	37	1.91
259377--259421	16	2.7	16	82	6	54	37	0	6	55	1.26
280323--280347	13	1.9	13	100	0	50	48	16	0	36	1.46
284534--284603	28	2.4	29	72	23	67	40	15	8	35	1.78
290595--290625	3	10.3	3	100	0	62	64	0	0	35	0.94
295579--295607	2	14.5	2	100	0	58	51	0	48	0	1.00
296008--296066	27	2.1	28	81	15	68	30	3	13	52	1.57
302439--302506	23	2.9	23	76	8	73	44	19	25	11	1.84
302489--302546	23	2.5	23	75	5	64	44	20	18	15	1.86
308821--308901	28	2.7	30	72	16	78	34	11	2	51	1.51
310924--310952	2	14.5	2	100	0	58	51	0	0	48	1.00
314207--314252	18	2.5	19	79	10	60	50	2	2	45	1.26
320873--321034	24	6.8	24	80	0	180	14	35	22	27	1.93
320924--321057	48	2.8	48	85	2	144	16	33	22	27	1.95
321259--321385	24	5.3	24	87	0	164	12	38	22	25	1.90
321259--321387	48	2.7	48	91	0	204	12	38	22	26	1.89
321467--321525	24	2.5	24	78	10	75	20	27	22	30	1.98
326219--326260	18	2.3	18	84	8	50	28	2	2	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326677--326750	31	2.4	30	78	13	78	50	1	1	47	1.18
328837--329185	125	2.8	127	86	2	470	18	18	20	42	1.89
336876--336901	6	4.3	6	100	0	52	53	46	0	0	1.00
336952--337115	83	2.0	83	82	2	204	34	18	10	36	1.85
342318--342365	23	2.0	24	88	4	71	35	8	16	39	1.79
342810--342884	39	1.9	39	94	5	134	30	8	20	41	1.81
348880--348904	2	12.5	2	100	0	50	48	0	0	52	1.00
362199--362226	5	5.6	5	100	0	56	0	39	17	42	1.50
364212--364263	27	1.9	27	88	7	79	26	21	36	15	1.93
373431--373856	138	3.1	138	88	2	622	31	16	21	30	1.95
375790--375824	18	1.9	18	88	0	52	57	0	0	42	0.99
391347--391400	21	2.5	21	85	11	65	31	1	1	64	1.14
396685--396732	6	8.0	6	88	0	69	35	4	16	43	1.67
398661--398744	43	2.0	42	86	4	116	35	11	5	46	1.65
410156--410180	2	12.5	2	100	0	50	0	0	48	52	1.00
410906--411041	71	1.9	71	92	3	229	37	17	31	13	1.88
410986--411127	41	3.5	41	78	10	132	30	20	30	19	1.97
412486--412600	23	5.0	23	88	3	142	40	20	23	15	1.90
412486--412600	46	2.5	46	86	0	167	40	20	23	15	1.90
412484--412633	46	3.2	46	81	5	115	42	20	23	14	1.88
415069--415099	10	2.9	11	90	9	55	64	0	9	25	1.24
415550--415655	23	4.5	23	82	6	133	10	22	22	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415576--415677	46	2.2	44	91	6	159	12	20	19	47	1.82
420687--420723	19	1.9	19	88	0	56	37	2	10	48	1.52
420674--420723	19	2.5	22	75	18	54	36	4	10	50	1.55
423058--423093	17	2.1	17	90	10	56	30	0	2	66	1.06
424688--424738	25	2.0	24	81	7	57	50	7	5	35	1.55
440288--440421	63	2.1	63	90	0	205	15	17	23	44	1.87
440472--440501	14	2.1	14	93	0	51	33	13	23	30	1.93
444980--445005	2	13.0	2	100	0	52	50	0	0	50	1.00
450757--450873	59	2.0	60	98	1	227	40	5	13	40	1.69
458790--458829	18	2.2	18	86	8	55	5	7	17	70	1.30

Tables:   1   2