Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014984.1 Kokia drynarioides strain JFW-HI SEQ_130028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3671
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35


Found at i:2810 original size:33 final size:33

Alignment explanation


    Indices: 2760--2824  Score: 103
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       2750 TAGCTGCTTC

                *       *                    
       2760 TTAAGATCAAGATGTTTAGTCACTTGGGCTCTT
          1 TTAAAATCAAGAAGTTTAGTCACTTGGGCTCTT

                                       *    
       2793 TTAAAATCAAGAAGTTTAGTCACTTGGTCTCT
          1 TTAAAATCAAGAAGTTTAGTCACTTGGGCTCT

       2825 CTTTTTTTTT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   29  1.00

ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38


Consensus pattern (33 bp):   
TTAAAATCAAGAAGTTTAGTCACTTGGGCTCTT
Done.