genome.fa.s14985.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014985.1 Kokia drynarioides strain JFW-HI SEQ_130029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  287700

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2760--2791	2	16.0	2	100	0	64	50	0	0	50	1.00
4081--4113	17	1.9	17	93	0	57	45	3	30	21	1.67
14161--14226	26	2.5	26	76	9	71	39	10	6	43	1.64
21750--21776	9	3.0	9	100	0	54	0	55	0	44	0.99
41365--41525	80	2.0	80	92	0	268	33	24	19	21	1.97
52552--52576	8	3.1	8	100	0	50	48	16	12	24	1.79
56277--56327	16	3.1	17	81	13	54	31	3	3	60	1.33
60538--60640	29	3.4	30	86	4	145	47	0	1	50	1.12
61931--61965	17	2.0	18	88	5	54	34	2	2	60	1.26
63374--63428	28	2.0	28	86	10	78	25	3	7	63	1.37
75434--75520	9	9.9	9	81	9	72	57	1	3	37	1.23
75454--75493	3	13.3	3	100	0	80	67	0	0	32	0.91
76662--76916	29	8.7	29	81	9	218	37	25	3	34	1.72
76662--76943	59	4.8	59	79	7	224	37	24	3	34	1.72
76779--76944	87	1.9	87	85	2	226	38	27	3	30	1.74
81515--81543	1	29.0	1	100	0	58	0	0	0	100	0.00
82464--82498	5	7.0	5	96	0	52	80	14	0	5	0.89
82891--82935	23	2.0	23	82	8	56	55	0	2	42	1.12
84606--84642	19	2.0	18	89	5	56	45	0	0	54	1.00
97110--97165	20	2.4	24	75	25	66	42	21	7	28	1.79
97541--97609	9	7.6	9	76	9	59	65	1	2	30	1.16
106831--107139	153	2.0	152	81	5	363	33	26	11	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108012--108048	18	2.1	18	89	0	56	16	0	5	78	0.93
112805--112907	17	6.3	16	72	19	61	51	4	1	41	1.34
112805--112887	6	13.8	6	71	22	59	53	2	1	43	1.21
113401--113469	21	2.9	23	79	20	72	52	1	2	43	1.25
119822--119858	20	1.9	20	94	5	67	62	0	10	27	1.28
123370--123544	88	2.0	87	89	1	269	32	13	20	34	1.91
127614--127661	2	24.0	2	100	0	96	0	50	0	50	1.00
139394--139433	6	6.7	6	91	0	62	20	35	27	17	1.95
139394--139434	12	3.4	12	93	0	73	21	34	26	17	1.95
145371--145481	52	2.1	52	91	0	177	32	14	12	40	1.83
155080--155118	2	20.0	2	94	5	71	48	0	0	51	1.00
156762--156859	39	2.4	41	88	8	148	30	20	16	32	1.94
161686--161784	40	2.5	40	90	3	155	30	19	19	31	1.96
161809--161846	19	2.1	19	90	5	60	36	15	0	47	1.46
163292--163319	3	9.3	3	100	0	56	67	0	32	0	0.91
165248--165301	10	4.8	12	77	15	53	35	0	0	64	0.94
165244--165308	23	2.9	21	81	9	67	40	0	0	60	0.97
172212--172251	2	20.0	2	100	0	80	50	0	0	50	1.00
176564--176652	46	1.9	46	90	0	142	35	15	13	34	1.87
179468--179523	2	28.0	2	96	0	103	0	48	0	51	1.00
187160--187254	6	15.8	6	67	20	56	29	26	16	27	1.97
187156--187256	18	5.9	18	84	13	151	28	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187156--187248	12	7.8	12	75	9	91	27	27	16	27	1.97
187158--187256	30	3.1	30	88	11	128	29	27	16	27	1.97
191394--191691	157	1.9	156	84	4	395	34	17	13	34	1.89
193661--193692	6	5.3	6	100	0	64	53	15	0	31	1.43
194476--194500	13	1.9	13	100	0	50	32	24	16	28	1.96
197193--197232	18	2.2	18	86	0	53	42	20	20	17	1.89
205420--205501	32	2.5	33	82	7	96	26	2	8	62	1.37
213503--213532	6	5.0	6	91	0	51	16	50	3	30	1.62
220737--220774	20	1.9	20	88	0	58	39	15	7	36	1.77
231665--231702	17	2.1	19	85	14	53	52	2	0	44	1.14
233067--233125	23	2.5	24	80	17	63	38	5	3	52	1.40
236029--236090	22	3.0	21	83	9	74	54	19	0	25	1.44
244584--244628	19	2.4	19	88	0	63	28	31	2	37	1.69
249601--249646	19	2.4	19	92	0	74	28	32	2	36	1.69
252566--253025	235	2.0	235	93	0	785	28	26	13	30	1.94
263334--263421	30	3.0	29	76	11	90	37	0	23	38	1.55
263341--263421	28	2.8	28	81	10	92	40	0	20	38	1.53
265083--265317	39	6.0	39	74	7	201	25	17	28	27	1.98
265093--265626	78	6.8	78	75	7	352	27	19	27	25	1.98
265227--266488	39	32.3	39	69	12	565	26	19	29	24	1.98
265227--265524	155	1.9	156	87	2	438	26	18	29	25	1.98
265600--266492	78	11.4	77	81	0	951	26	19	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267280--267474	106	1.8	106	84	2	266	37	8	24	29	1.85
267875--267941	29	2.3	29	82	9	84	0	17	0	82	0.68
267879--267940	19	3.3	19	76	13	74	0	16	0	83	0.64
267879--267938	17	3.4	17	78	19	68	0	16	0	83	0.65
268751--268804	15	3.7	15	75	20	53	0	25	0	74	0.83
268752--268793	17	2.6	16	85	14	59	0	26	0	73	0.83
270853--270890	13	2.8	14	84	8	51	44	26	13	15	1.83
270915--270968	23	2.4	22	84	9	65	18	1	33	46	1.60
279881--279972	41	2.2	41	94	0	157	29	6	29	34	1.82
287036--287111	29	2.6	29	78	10	84	44	0	2	52	1.14
287039--287127	29	3.1	29	70	10	76	41	0	4	53	1.21
287101--287150	20	2.5	19	77	6	55	36	2	4	58	1.29

Tables:   1

The End!