genome.fa.s14989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014989.1 Kokia drynarioides strain JFW-HI SEQ_130033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245740

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549--1581	2	16.5	2	100	0	66	51	0	0	48	1.00
8935--8961	13	2.1	13	100	0	54	37	0	14	48	1.45
9180--9248	24	3.1	21	75	15	68	49	1	0	49	1.09
9177--9288	30	3.7	30	70	24	90	50	1	0	46	1.17
9180--9298	21	5.6	22	71	16	67	50	1	0	47	1.17
9270--9309	13	3.0	13	82	7	53	52	0	0	47	1.00
9270--9309	14	2.9	14	85	3	55	52	0	0	47	1.00
14146--14177	15	2.0	17	88	11	50	18	0	6	75	1.01
14364--14402	18	2.2	19	86	9	55	66	5	5	23	1.32
22270--22337	35	1.9	35	100	0	136	45	11	23	19	1.83
22334--22387	25	2.2	25	83	6	65	42	1	1	53	1.22
29332--29395	29	2.2	30	82	2	76	34	7	14	43	1.74
30239--30280	20	2.1	20	100	0	84	16	9	14	59	1.60
36819--36851	3	11.0	3	100	0	66	0	33	33	33	1.58
41381--41418	16	2.4	16	91	4	60	44	0	0	55	0.99
43781--43812	2	16.0	2	100	0	64	50	0	0	50	1.00
44845--44879	14	2.4	15	95	4	63	42	8	0	48	1.33
59157--59197	21	2.0	21	85	0	55	39	12	4	43	1.63
59205--59244	21	1.9	21	89	0	62	30	12	0	57	1.36
65432--65469	2	19.0	2	100	0	76	50	0	0	50	1.00
66280--66446	91	1.8	91	81	2	210	24	16	10	48	1.78
71131--71190	30	2.0	31	83	9	79	48	15	10	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83101--83175	4	18.8	4	88	0	87	50	40	0	9	1.35
83103--83203	12	8.2	12	85	4	103	50	35	0	13	1.42
83127--83212	4	22.0	4	88	4	122	50	30	0	19	1.48
110295--110331	19	2.1	19	85	10	51	37	8	10	43	1.69
116145--116182	2	19.0	2	100	0	76	50	0	0	50	1.00
116193--116245	23	2.3	23	93	3	90	30	0	3	66	1.10
120785--120833	27	1.9	26	84	12	66	38	24	10	26	1.87
127171--127201	6	5.2	6	100	0	62	0	51	0	48	1.00
134025--134051	2	13.5	2	100	0	54	0	48	0	51	1.00
135610--135701	19	4.8	19	69	14	55	63	2	5	29	1.29
135665--135723	19	3.1	19	79	18	59	61	3	8	27	1.41
135886--135947	27	2.3	27	81	13	81	32	0	1	66	1.02
135905--135951	17	2.7	19	81	15	57	36	0	0	63	0.94
135917--135951	18	2.0	18	88	5	54	37	0	0	62	0.95
135886--135950	28	2.3	29	79	10	82	33	0	1	64	1.03
138669--138714	19	2.4	19	86	13	76	56	4	6	32	1.45
142805--142976	58	2.9	58	79	5	193	38	1	22	37	1.64
142760--142966	88	2.4	86	83	5	247	40	1	23	34	1.66
142760--142976	29	7.4	29	76	11	167	40	1	22	35	1.65
146124--146165	22	1.9	22	85	9	59	50	0	0	50	1.00
147384--147421	20	1.9	20	84	10	51	65	2	0	31	1.06
160204--160313	57	2.0	57	82	12	140	55	2	0	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161007--161054	18	2.8	17	81	12	53	52	2	2	43	1.24
161252--161293	19	2.2	20	87	8	61	64	0	2	33	1.07
161258--161305	25	1.9	25	86	0	69	72	0	0	27	0.84
175387--175440	4	13.8	4	81	11	67	75	0	24	0	0.80
175916--175956	19	2.1	19	86	9	55	56	4	9	29	1.53
177015--177071	22	2.6	22	94	0	105	17	12	29	40	1.86
177164--177964	84	9.5	83	86	4	1088	46	4	5	42	1.48
177164--177974	334	2.4	335	89	3	1191	46	4	5	42	1.48
178078--178126	12	3.8	12	75	19	53	40	8	0	51	1.32
178088--178122	17	2.1	16	89	5	52	48	8	0	42	1.33
178078--178135	28	2.1	28	86	0	80	43	10	0	46	1.38
181846--182209	121	3.0	119	82	4	414	38	14	16	30	1.89
181846--182209	59	6.1	59	77	8	279	38	14	16	30	1.89
188387--188412	2	13.0	2	100	0	52	50	0	0	50	1.00
189731--189862	69	1.9	69	82	3	167	35	12	27	25	1.91
204248--204329	29	2.7	31	75	11	80	4	6	19	69	1.28
204321--204383	12	5.3	12	78	3	74	11	1	15	71	1.22
206327--206396	23	3.1	23	87	2	97	20	22	8	48	1.76
209925--209984	23	2.7	23	89	2	86	21	20	11	46	1.82
209945--210000	23	2.4	23	87	0	76	23	19	14	42	1.88
210331--210357	13	2.1	13	100	0	54	55	14	7	22	1.64
213903--213943	20	2.0	20	86	9	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213924--214023	18	5.6	18	74	17	84	33	4	3	60	1.31
219427--219478	27	1.9	27	88	7	79	61	1	0	36	1.07
226056--226093	18	2.1	18	90	0	58	18	23	0	57	1.40
226101--226172	36	2.0	36	81	10	85	34	4	4	56	1.37
228067--228115	24	2.0	24	92	0	80	36	38	6	18	1.76
238487--238553	35	1.9	35	87	0	98	38	25	4	31	1.76
238651--238738	35	2.5	35	75	10	90	22	13	32	30	1.93
238662--238793	56	2.4	56	76	0	147	24	10	31	34	1.89
239831--239918	44	2.0	43	88	2	131	32	9	7	50	1.63
240681--240725	19	2.4	19	81	7	56	37	0	2	60	1.09
240664--240716	28	2.0	25	82	17	63	37	0	3	58	1.16
243547--243708	59	2.8	60	82	2	168	38	4	23	32	1.76
243598--243981	29	13.0	30	71	14	221	38	2	24	33	1.69
243602--243981	59	6.4	58	81	7	356	38	2	24	33	1.70

Tables:   1

The End!