genome.fa.s14996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014996.1 Kokia drynarioides strain JFW-HI SEQ_130040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66596

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173--218	2	23.0	2	90	0	74	50	4	0	45	1.21
4020--4059	12	3.5	12	80	13	57	57	10	25	7	1.57
4016--4059	22	2.0	22	100	0	88	59	9	22	9	1.56
4446--4489	22	2.0	22	82	8	54	22	4	15	56	1.57
6333--6862	29	18.1	30	69	17	253	34	25	2	37	1.71
6342--6920	59	9.9	57	80	9	468	33	25	3	37	1.74
6332--6915	117	5.0	118	80	10	514	33	25	3	37	1.73
11281--11323	17	2.5	17	78	14	52	79	0	20	0	0.74
12149--12225	13	5.9	12	74	18	57	80	1	12	5	0.94
12149--12203	26	2.2	24	83	6	65	81	1	14	1	0.85
13156--14743	49	32.3	48	72	10	799	38	18	24	18	1.93
13156--14746	98	16.2	98	81	6	1576	38	18	24	18	1.93
14859--15052	101	1.9	101	90	0	307	34	15	19	30	1.93
15119--15516	78	5.1	78	83	3	392	24	30	18	26	1.98
15119--15483	39	9.4	38	74	5	250	24	30	19	25	1.98
15119--15516	157	2.6	157	81	4	405	24	30	18	26	1.98
15975--16009	12	2.7	13	91	8	54	40	0	0	60	0.97
17542--18032	29	16.8	29	76	11	310	34	25	3	36	1.72
17540--18037	59	8.5	58	83	4	513	34	25	3	36	1.73
28052--28109	23	2.5	23	82	0	71	20	18	27	32	1.97
29900--29935	14	2.8	12	84	15	54	83	0	0	16	0.65
29900--29936	13	2.8	13	88	11	58	83	0	0	16	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31147--31200	23	2.3	23	87	0	72	24	22	22	31	1.98
36931--36976	23	2.0	23	82	0	56	21	17	28	32	1.96
38768--38815	5	9.4	5	91	8	71	79	0	0	20	0.74
38775--38820	8	5.9	8	85	14	69	78	0	0	21	0.76
42967--43142	96	1.8	97	82	6	232	42	14	6	36	1.72
43175--43222	21	2.3	20	79	10	51	60	0	2	37	1.09
43243--43365	19	6.5	18	74	20	101	65	2	4	26	1.25
43254--43341	10	9.4	10	67	12	53	70	2	3	23	1.14
43242--43364	36	3.2	38	82	13	139	65	2	4	26	1.25
43540--43577	20	1.9	20	84	10	51	21	5	10	63	1.46
43560--43629	36	1.9	36	88	11	108	32	4	4	58	1.37
43639--43675	19	1.9	19	89	10	58	45	0	0	54	1.00
43613--43668	27	2.1	27	83	6	69	50	1	1	46	1.22
46801--46925	41	3.0	41	78	5	135	32	21	17	28	1.96
46760--46925	43	3.9	43	77	4	167	30	22	17	28	1.97
47221--47352	66	2.0	66	83	5	169	13	26	18	40	1.88
49734--49920	85	2.2	85	83	2	241	30	28	17	23	1.97
49692--49920	43	5.3	42	80	3	233	30	28	17	24	1.97
55301--55342	21	2.0	21	90	0	66	19	28	23	28	1.98
55411--55685	41	6.7	41	80	1	248	21	30	17	30	1.96
55444--55677	82	2.9	80	82	4	279	20	31	17	30	1.96
55442--55676	123	1.9	123	81	1	283	21	31	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55659--55707	22	2.2	22	92	0	80	12	22	26	38	1.89
55681--55783	41	2.5	41	87	1	145	14	30	22	33	1.94
55588--55783	104	1.9	103	84	1	266	17	31	20	30	1.95
55756--55866	40	2.8	40	84	5	152	18	25	18	37	1.93
59091--59136	17	2.8	17	90	3	67	36	13	34	15	1.86
60884--61123	42	5.8	42	81	4	213	19	24	18	37	1.94
60932--61125	83	2.4	82	83	3	230	19	23	19	38	1.93
60869--61162	41	7.2	40	79	4	205	20	22	19	38	1.94
62446--62475	14	2.2	14	94	5	53	70	0	3	26	1.03
64029--64066	12	3.2	12	81	7	51	47	5	2	44	1.39

Tables:   1

The End!