genome.fa.s14997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014997.1 Kokia drynarioides strain JFW-HI SEQ_130041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93508

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915--1953	19	2.1	19	95	0	69	33	28	15	23	1.95
3097--3134	20	1.9	19	89	5	58	60	2	0	36	1.11
10412--10447	17	2.1	18	94	5	65	61	0	33	5	1.19
14505--14552	24	1.9	26	84	16	66	45	0	22	31	1.53
14615--14764	23	6.5	23	81	6	160	12	24	20	43	1.85
20885--20944	29	2.1	29	96	0	111	23	25	11	40	1.88
29527--29579	27	2.0	27	96	0	97	33	9	28	28	1.88
36901--37243	43	8.0	43	80	2	314	29	25	17	27	1.98
42819--43025	41	5.0	41	88	1	281	15	30	20	33	1.93
43011--43063	26	2.0	26	88	0	79	9	18	16	54	1.69
43972--43998	12	2.2	12	100	0	54	48	25	0	25	1.52
46719--46816	50	2.0	50	100	0	196	26	20	25	27	1.99
51132--51221	17	5.2	18	82	10	116	41	1	2	55	1.19
51132--51221	6	15.5	6	72	19	75	41	1	2	55	1.19
51132--51225	35	2.7	35	86	3	127	42	1	2	54	1.19
51211--51251	20	2.0	20	86	9	57	51	2	0	46	1.14
51955--51985	15	2.1	15	93	0	53	0	16	32	51	1.44
53030--53379	30	11.7	30	76	9	274	35	23	3	37	1.71
53069--53472	59	6.8	59	81	8	330	33	24	4	37	1.75
53243--53417	30	5.9	29	74	15	137	33	25	4	36	1.77
53217--53438	30	7.5	31	70	17	132	33	22	4	38	1.76
57025--57111	41	2.1	41	95	0	156	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68677--68713	16	2.2	16	90	4	56	37	0	8	54	1.30
68910--68951	18	2.3	19	84	8	52	61	7	0	30	1.22
73512--73614	51	2.0	51	96	0	188	33	18	22	26	1.97
74506--74664	29	5.4	29	81	5	196	40	0	19	38	1.56
76157--76197	17	2.3	18	84	15	59	9	9	29	51	1.67
76157--76206	17	3.0	16	83	13	57	14	8	26	52	1.68
76760--76881	48	2.6	48	77	1	129	27	22	13	36	1.91
76637--76956	170	1.9	170	89	0	496	23	18	17	40	1.90
76637--76992	170	2.1	170	86	1	480	23	19	16	41	1.90
76818--77122	122	2.5	122	85	1	414	25	20	15	39	1.92
76920--77328	206	2.0	206	85	1	552	24	21	15	38	1.92
77143--77449	121	2.5	121	84	3	402	22	21	17	38	1.93
76828--77655	327	2.5	328	86	1	1151	23	20	17	38	1.93
77370--77533	84	2.0	84	86	2	231	23	23	17	36	1.94
77268--78024	207	3.7	207	88	2	1069	22	21	17	38	1.94
77575--77740	85	2.0	84	84	1	215	22	22	17	36	1.94
77989--78061	37	2.0	37	94	0	128	24	17	16	41	1.90
77717--78343	319	2.0	319	86	1	871	23	19	17	39	1.92
78038--78416	207	1.8	207	88	1	580	23	19	17	39	1.92
78472--78937	42	11.5	41	81	7	483	27	16	29	26	1.97
78445--78934	81	6.1	80	82	4	508	27	16	29	26	1.97
79282--79400	50	2.4	50	81	1	132	15	30	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79375--79565	49	3.9	49	83	2	231	16	28	18	36	1.93
80430--80473	8	5.5	8	86	10	63	9	11	0	79	0.93
80426--80473	16	3.0	16	85	11	71	8	14	0	77	0.99
80453--80519	35	1.9	35	87	6	100	10	14	0	74	1.07
83039--83328	144	2.0	144	98	0	562	26	21	15	35	1.94
86361--86594	30	7.9	29	84	6	269	39	0	23	37	1.58
86361--86594	59	4.0	59	84	7	264	39	0	23	37	1.58
87621--87670	17	2.9	17	80	13	59	14	8	24	54	1.66
89260--89294	17	2.0	18	94	5	63	85	0	5	8	0.73

Tables:   1

The End!