Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014998.1 Kokia drynarioides strain JFW-HI SEQ_130042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53220
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Warning! 335 characters in sequence are not A, C, G, or T
Found at i:8230 original size:9 final size:9
Alignment explanation
Indices: 8216--8248 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
8206 AGAGGAAAAA
8216 AAGAAGCAG
1 AAGAAGCAG
8225 AAGAAGCAG
1 AAGAAGCAG
*
8234 AAGAAACAG
1 AAGAAGCAG
8243 AAGAAG
1 AAGAAG
8249 AGAGATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.09, G:0.30, T:0.00
Consensus pattern (9 bp):
AAGAAGCAG
Found at i:15539 original size:2 final size:2
Alignment explanation
Indices: 15534--15561 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15524 ACACACACTC
15534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15562 GAAATCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21267 original size:3 final size:3
Alignment explanation
Indices: 21259--21299 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
21249 CTCTGATATT
* *
21259 TTC TTC TTC TTC TTC TTC TTC TTC TGC TTC TTC TTT TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
21300 TTCATTTCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:32976 original size:19 final size:18
Alignment explanation
Indices: 32952--33003 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
32942 TGTCATATCC
*
32952 AAAAATAATTTAAAAATA
1 AAAAATAATTTAAAAACA
32970 TAAAAAT-ATTTAAAAACA
1 -AAAAATAATTTAAAAACA
*
32988 AAAACAAAATTTAAAA
1 AAAA-ATAATTTAAAA
33004 CAGTAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 4 0.14
18 11 0.38
19 14 0.48
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAAATAATTTAAAAACA
Found at i:33525 original size:43 final size:43
Alignment explanation
Indices: 33459--33549 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
33449 AGATTTTTTT
* * * *
33459 TATAATGACACATATAGTACATCATCGGGTAAATTAAAACATC
1 TATAATGACACACACAGTACATCATCGGATAAACTAAAACATC
* * * *
33502 TATATTGACACACACAGTGCATCATCGGATAAACTGAAGCATC
1 TATAATGACACACACAGTACATCATCGGATAAACTAAAACATC
33545 TATAA
1 TATAA
33550 GACTTACATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (43 bp):
TATAATGACACACACAGTACATCATCGGATAAACTAAAACATC
Found at i:33663 original size:32 final size:32
Alignment explanation
Indices: 33627--33690 Score: 85
Period size: 34 Copynumber: 2.0 Consensus size: 32
33617 AAATCAAAGT
*
33627 ATCTATACTG-GCACACAGTGCATCATCGAATC
1 ATCTATACTGAACACACAGTGCAT-ATCGAATC
*
33659 ATCTATATTGACACACACAGTGCATATCGAAT
1 ATCTATACTGA-ACACACAGTGCATATCGAAT
33691 AAACCGAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 9 0.32
33 7 0.25
34 12 0.43
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (32 bp):
ATCTATACTGAACACACAGTGCATATCGAATC
Found at i:33747 original size:43 final size:43
Alignment explanation
Indices: 33653--34528 Score: 631
Period size: 43 Copynumber: 20.3 Consensus size: 43
33643 AGTGCATCAT
* * * * *
33653 CGAATCATCTATATTGACACACACAGTGCAT-ATCGAATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * *
33695 CGAAGCATCTACATTGGCACACGCAATGCATCATCGGATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * *
33738 CAAAGCATCTATACTGGCATACACAGTGCATCATCAGG-TAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATC-GGATAAAC
* ** * * * * *
33781 CGAAGCATCTATACTGACACGGATAATGCACCATCGAATATAT
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * * * * * * *
33824 CAAAGTAACTATACTGGCACATACAATGTATCATTGGATATAG
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * ** * * *
33867 AGAAGCATTTATACTTCCACCCACACAGTGCCTCATCGGATAAAT
1 CGAAGCATCTATACTGGCA--CACACAATGCATCATCGGATAAAC
** ** * *
33912 CGAAGCATCTATACTAACACGGATAATGCATCATCGAATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
** ** * *
33955 CGAAGCATCTATACTAACACGGATAACGCATCATCGGATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * * ** *
33998 CGAAACATATATACTGGCACACATAATGCA-CAAAGGATAAAT
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* *
34040 TGAAGCATCTATACT-G-ACA-AGCAAGTGCATCATCGGGTAAAC
1 CGAAGCATCTATACTGGCACACA-CAA-TGCATCATCGGATAAAC
* * *
34082 CGAAGCATCTATACTGGCATACACAGTGCATCATCGGGTAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* *
34125 CGAAGCATCTATATTGGCACACACAATGCATCATCGAATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * *
34168 AGAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * * * * * *
34211 CGAAGCATGTATACTGTCACAGACAATGCGTCATCGAATATAT
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * * * * * *
34254 CGAAGTAACTATACTGGCACATATAGTGCATCATTGGATACAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * * * * * * *
34297 AGATGCATCTATACTAGCACCCATATAGTGCCTCATTGGATAAAT
1 CGAAGCATCTATACTGGCACACACA-A-TGCATCATCGGATAAAC
** * * * *
34342 CGAAGCATCTATACTAACA-AGGACAATGCATCATTGAATAAAT
1 CGAAGCATCTATACTGGCACA-CACAATGCATCATCGGATAAAC
** ** *
34385 CGAAGCATCTATACTAACACGGATAATGCATCATCGGATAAAC
1 CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* * ***
34428 CGCAA-CATATATATTGGCACACACAATGCATCAAAAGATAAAC
1 CG-AAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
* *
34471 TGAAGCATCTATACTGACA-AGCA-AAGTGCATCATC-GAGTAAAC
1 CGAAGCATCTATACTGGCACA-CACAA-TGCATCATCGGA-TAAAC
* *
34514 CTAAGTATCTATACT
1 CGAAGCATCTATACT
34529 ATGTCACGGA
Statistics
Matches: 660, Mismatches: 154, Indels: 39
0.77 0.18 0.05
Matches are distributed among these distances:
39 1 0.00
40 5 0.01
41 5 0.01
42 77 0.12
43 498 0.75
44 9 0.01
45 65 0.10
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (43 bp):
CGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAAC
Found at i:33768 original size:160 final size:160
Alignment explanation
Indices: 33498--33796 Score: 366
Period size: 160 Copynumber: 1.9 Consensus size: 160
33488 TAAATTAAAA
* * * ** **
33498 CATCTATATTGACACACACAGTGCATCATCGGATAAACTGAAGCATCTATAAGACTTACATTATG
1 CATCTATATTGACACACACAGTGCATCATCGAATAAACCGAAGCATCTACAAGACACACACAATG
* * * * *
33563 TATCACCAAATATACCAAAACATCTATACTAGCACACATAGTGCATAATCAGATAAATCAAAGTA
66 CATCACCAAATAAACCAAAACATCTATACTAGCACACACAGTGCATAATCAGATAAACCAAAGCA
33628 TCTATACTGGCACACAGTGCATCATCGAAT
131 TCTATACTGGCACACAGTGCATCATCGAAT
* * *
33658 CATCTATATTGACACACACAGTGCAT-ATCGAATAAACCGAAGCATCTACATTGGCACACGCAAT
1 CATCTATATTGACACACACAGTGCATCATCGAATAAACCGAAGCATCTACA-AGACACACACAAT
* ** * * * * * *
33722 GCATCATCGGATAAACCAAAGCATCTATACTGGCATACACAGTGCATCATCAGGTAAACCGAAGC
65 GCATCACCAAATAAACCAAAACATCTATACTAGCACACACAGTGCATAATCAGATAAACCAAAGC
33787 ATCTATACTG
130 ATCTATACTG
33797 ACACGGATAA
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
159 21 0.18
160 93 0.82
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (160 bp):
CATCTATATTGACACACACAGTGCATCATCGAATAAACCGAAGCATCTACAAGACACACACAATG
CATCACCAAATAAACCAAAACATCTATACTAGCACACACAGTGCATAATCAGATAAACCAAAGCA
TCTATACTGGCACACAGTGCATCATCGAAT
Found at i:34269 original size:430 final size:431
Alignment explanation
Indices: 33653--34528 Score: 1310
Period size: 430 Copynumber: 2.0 Consensus size: 431
33643 AGTGCATCAT
* * *
33653 CGAATCATCTATATTGACACACACAGTGCATATCGAATAAACCGAAGCATCTACATTGGCACACG
1 CGAAGCATCTATACTGACACACACAGTGCATATCGAATAAACCGAAGCATCTACATTGGCACACA
* * *
33718 CAATGCATCATCGGATAAACCAAAGCATCTATACTGGCATACACAGTGCATCATCAGGTAAACCG
66 CAATGCATCATCGAATAAACCAAAGCATCTATACTGGCACACACAGTGCATCATCAGATAAACCG
* *
33783 AAGCATCTATACTGACACGGATAATGCACCATCGAATATATCAAAGTAACTATACTGGCACATAC
131 AAGCATCTATACTGACACAGACAATGCACCATCGAATATATCAAAGTAACTATACTGGCACATAC
* * * * *
33848 AATGTATCATTGGATATAGAGAAGCATTTATACTTCCACCCACACAGTGCCTCATCGGATAAATC
196 AATGCATCATTGGATACACAGAAGCATCTATACTACCACCCACACAGTGCCTCATCGGATAAATC
* *
33913 GAAGCATCTATACTAACACGGATAATGCATCATCGAATAAACCGAAGCATCTATACTAACACGGA
261 GAAGCATCTATACTAACAAGGACAATGCATCATCGAATAAACCGAAGCATCTATACTAACACGGA
* * *
33978 TAACGCATCATCGGATAAACCGAAACATATATACTGGCACACATAATGCA-CAAAGGATAAATTG
326 TAACGCATCATCGGATAAACCGAAACATATATACTGGCACACACAATGCATCAAAAGATAAACTG
*
34042 AAGCATCTATACTGACAAGC-AAGTGCATCATCGGGTAAAC
391 AAGCATCTATACTGACAAGCAAAGTGCATCATCGAGTAAAC
* * ** *
34082 CGAAGCATCTATACTGGCATACACAGTGCATCATCGGGTAAACCGAAGCATCTATATTGGCACAC
1 CGAAGCATCTATACTGACACACACAGTGCAT-ATCGAATAAACCGAAGCATCTACATTGGCACAC
34147 ACAATGCATCATCGAATAAA-CAGAAGCATCTATACTGGCACACACAGTGCATCATC-GAATAAA
65 ACAATGCATCATCGAATAAACCA-AAGCATCTATACTGGCACACACAGTGCATCATCAG-ATAAA
* * ** *
34210 CCGAAGCATGTATACTGTCACAGACAATGCGTCATCGAATATATCGAAGTAACTATACTGGCACA
128 CCGAAGCATCTATACTGACACAGACAATGCACCATCGAATATATCAAAGTAACTATACTGGCACA
* * * * * * *
34275 TATAGTGCATCATTGGATACACAGATGCATCTATACTAGCACCCATATAGTGCCTCATTGGATAA
193 TACAATGCATCATTGGATACACAGAAGCATCTATACTACCACCCACACAGTGCCTCATCGGATAA
* *
34340 ATCGAAGCATCTATACTAACAAGGACAATGCATCATTGAATAAATCGAAGCATCTATACTAACAC
258 ATCGAAGCATCTATACTAACAAGGACAATGCATCATCGAATAAACCGAAGCATCTATACTAACAC
* * *
34405 GGATAATGCATCATCGGATAAACCGCAACATATATATTGGCACACACAATGCATCAAAAGATAAA
323 GGATAACGCATCATCGGATAAACCGAAACATATATACTGGCACACACAATGCATCAAAAGATAAA
34470 CTGAAGCATCTATACTGACAAGCAAAGTGCATCATCGAGTAAAC
388 CTGAAGCATCTATACTGACAAGCAAAGTGCATCATCGAGTAAAC
* *
34514 CTAAGTATCTATACT
1 CGAAGCATCTATACT
34529 ATGTCACGGA
Statistics
Matches: 399, Mismatches: 43, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
429 30 0.08
430 305 0.76
431 32 0.08
432 32 0.08
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (431 bp):
CGAAGCATCTATACTGACACACACAGTGCATATCGAATAAACCGAAGCATCTACATTGGCACACA
CAATGCATCATCGAATAAACCAAAGCATCTATACTGGCACACACAGTGCATCATCAGATAAACCG
AAGCATCTATACTGACACAGACAATGCACCATCGAATATATCAAAGTAACTATACTGGCACATAC
AATGCATCATTGGATACACAGAAGCATCTATACTACCACCCACACAGTGCCTCATCGGATAAATC
GAAGCATCTATACTAACAAGGACAATGCATCATCGAATAAACCGAAGCATCTATACTAACACGGA
TAACGCATCATCGGATAAACCGAAACATATATACTGGCACACACAATGCATCAAAAGATAAACTG
AAGCATCTATACTGACAAGCAAAGTGCATCATCGAGTAAAC
Found at i:39968 original size:43 final size:43
Alignment explanation
Indices: 39918--40449 Score: 486
Period size: 43 Copynumber: 12.6 Consensus size: 43
39908 GGACGTGACA
39918 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
* * ** *
39961 ATTGG--CACACAGTGCATTATCGAATAAACCAAAGCATGTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
* * *
40002 AATGGCACACAAAGTGTATCATCGAATAAA-TCGAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACT-GAAGCATCTAT
** ** * * * * *
40045 ACTAACACGGATAATGCATCATCGGATAAACCGTAA-CATATAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTG-AAGCATCTAT
* *
40088 ATTGGCACACACAATGCATCAAAT-G-ATAAACTGAAGCATCTAT
1 ACTGGCACACACAGTGCATC--ATCGAATAAACTGAAGCATCTAT
* * * * *
40131 ATTGACA-AGCAAAGTGCATCATCGAGTAAACCT-AAGCGTCTAT
1 ACTGGCACA-CACAGTGCATCATCGAATAAA-CTGAAGCATCTAT
*
40174 ACTGGCACACACAGTGCATCATCGAATAAATTGAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
* * ** *
40217 ATTGGCACACACAGTGCATTATCGAATAAACCAAAGCATGTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
* * * *
40260 AATGGCAAACAAAGTGCATCATCAAATAAA-TCGAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACT-GAAGCATCTAT
* *
40303 ACTCGCACAC-CA-T-CATCA---AATAAA-TCAAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACT-GAAGCATCTAT
**
40340 ACTGGCACACACAGTGCATCATC-ATATAAACCAAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGA-ATAAACTGAAGCATCTAT
* *
40383 ACTGGCACACACTGTGCATCATCGTATAAACTGAAGCATCTAT
1 ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
* *
40426 CCTGACACACACAGTGCATCATCG
1 ACTGGCACACACAGTGCATCATCG
40450 GATACACCGA
Statistics
Matches: 396, Mismatches: 70, Indels: 46
0.77 0.14 0.09
Matches are distributed among these distances:
37 27 0.07
38 2 0.01
39 1 0.00
40 10 0.03
41 39 0.10
42 7 0.02
43 302 0.76
44 6 0.02
45 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (43 bp):
ACTGGCACACACAGTGCATCATCGAATAAACTGAAGCATCTAT
Found at i:40173 original size:129 final size:129
Alignment explanation
Indices: 39923--42365 Score: 537
Period size: 129 Copynumber: 19.4 Consensus size: 129
39913 TGACAACTGG
* * * * *
39923 CACACACAGTGCATCATCGAATAAACTGAAGCATCTATATTGG--CACACAGTGCATTATCGAAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * * *
39986 AAACCAAAGCATGTATAATGGCACACAAAGTGTATCATCGAATAAATCGAAGCATCTATACTAA
66 AAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTAA
** * *
40050 CACGGATAATGCATCATCGGATAAACCGTAA-CATATATATTGGCACACACAATGCATCAAAT-G
1 CACACACAATGCATCATCGAATAAACCG-AAGCATATATATTGGCACACACAATGCAT--AATCG
** * * * * * *
40113 -ATAAACTGAAGCATCTATATTGACAAGCAAAGTGCATCATCGAGTAAACCTAAGCGTCTATACT
63 AATAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACT
**
40177 GG
128 AA
* ** * * *
40179 CACACACAGTGCATCATCGAATAAATTGAAGCATCTATATTGGCACACACAGTGCATTATCGAAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * *
40244 AAACCAAAGCATGTATAATGGCAAACAAAGTGCATCATCAAATAAATCGAAGCATCTATACT--
66 AAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTAA
* * * * * * * *
40306 CGCACAC----CATCATCAAATAAATCAAAGCATCTATACTGGCACACACAGTGCATCATC-ATA
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGA-A
* * * ** * * *
40366 TAAACCAAAGCATCTATACTGGCACACACTGTGCATCATCGTATAAA-CTGAAGCATCTATCCTG
65 TAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATC-GAAGCATCTATACTA
40430 A
129 A
* * * * * *
40431 CACACACAGTGCATCATCGGATACACCG-AGC------A-T-----ACAGAATGTATCATCGAAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* *** * * * * *
40483 AAA-CGAAGCATCTACCCT-AGCAAACACAA-TACATAATTGGATAAACCGAAGCATCTATACT-
66 AAACCAAAGCATCTATAATGA-CAAACA-AAGTGCATCATCGAATAAATCGAAGCATCTATACTA
40544 -
129 A
** * * * ** * * * * * * *
40544 GGCATAC--TGCATCATCGGATAAATCGAAAAATCTAAACTAGCACACACAGTGCATCATTGAAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * * * * * *
40607 AAATCAAAACATCTATACT-A-AAACACATAGTGTATCATCGAATACACCGAAACATCTATACT-
66 AAACCAAAGCATCTATAATGACAAACA-A-AGTGCATCATCGAATAAATCGAAGCATCTATACTA
40669 A
129 A
* * * * * * * * *
40670 -GCACAC-A--CATCATCGAATAAACTGAAGCATCTATACTAGCACACATAGTGCATCATCAAAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * * * * * * ** * **
40731 AAATCGAAGCATCTATACTAACACACATAGTGCATCATCGAATAAACCGTGGCATCTATATTGG
66 AAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTAA
* * * * * * * * * * * * * *
40795 TACACACAGTGCACCATCAAATAAATCGTAA-CATCTATACTGACACATATAATGCCTCATAGGA
1 CACACACAATGCATCATCGAATAAACCG-AAGCATATATATTGGCACACACAATGCATAATCGAA
** * *** ** ** * *
40859 TAAACTGAAGCATCTATACTGACATGTAAAGTGCATCATCGGGTAAAAAGAAGCATCTATATTAG
65 TAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTAA
* * * * * * * * ** * *
40924 CA-ACTATAGTGCATCATCGGGA-AAACCCAAGCATCTAAACTGGTACACTTAGTGCATCATCGA
1 CACAC-ACAATGCATCATC-GAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGA
*** * * * * * * *
40987 ATAAATTGAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAACCGAAGCATTTATTCAG
64 ATAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTA-T-AC
*
41052 TTA
127 TAA
* * * * * *
41055 CACA-A-AGTGCATCATCGAATAAACCGAAGCATCTATATTGACACACAAAATGCATCATCGGAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * * * * * * * * *
41118 AAACAAAAGAATCTATATTAGA-AGACAGA-TTC-TCATCGGATAAAAT-GAAGCATTTATATTG
66 AAACCAAAGCATCTATAAT-GACAAACAAAGTGCATCATCGAAT-AAATCGAAGCATCTATACTA
41179 A
129 A
* * * * * ** * * * * * * *
41180 CAAACATAGA-GTATCATCTG-ATACATCGAAATATCTACACTGGCACACACAGTGCATCATTGG
1 CACACACA-ATGCATCATC-GAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGA
*** * * * * * * * *
41243 ATAAATTGAAGCATCTATACTGGC--ACACATTGTAACATCGAATAAACCAAAGCATCTATACT-
64 ATAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTA
41305 -
129 A
** * * ** * *
41305 GGCACACAGTGCAAT-ATCGGATAAACTAAAGAATATATATTGGCACACACAATGCATTATCTG-
1 CACACACAATGC-ATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATC-GA
*** * * * * * * *
41368 ATAAATTGAACCATCTATACT-AGCAAACAAAGT---TCATTGAATACA-CTGAAACACCTATAT
64 ATAAACCAAAGCATCTATAATGA-CAAACAAAGTGCATCATCGAATAAATC-GAAGCATCTATAC
**
41428 TGG
127 TAA
* * ** * * * * *
41431 CGA-ACA-AAGTGCATCA--G-ATACACCGAAACACCTATACTGGGACACACATTACATCATC-A
1 C-ACACACAA-TGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGA
* * * * *
41490 GATAAACTAAAGCATC---ACTGTCACACATAA-TGCATCATCGAATAAACCGAAGCATCTATAC
64 -ATAAACCAAAGCATCTATAATGACAAACA-AAGTGCATCATCGAATAAATCGAAGCATCTATAC
41551 T-A
127 TAA
* * * * * * * * * * *
41553 -GCACACATTACATCATCAAATAAATCGAAGCA-ATTATACTAGCACACATAGTGCATCATCGGA
1 CACACACAATGCATCATCGAATAAACCGAAGCATA-TATATTGGCACACACAATGCATAATCGAA
** * * * * * * * * * * *
41616 TAAACTGAAGCATCTATATTGACACATAAAATGCATTATTGGATTAA-CTGCAGCATCTATATTG
65 TAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATC-GAAGCATCTATACTA
*
41680 G
129 A
* * * * *
41681 CACACACAGTGGATCATCGAAT--A---AA-C---TA-A-TGACACACA-AAGTGCATCATCGGA
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAA-TGCATAATCGAA
* * * * * * *
41734 TATATCGAAA-CAACTATACTAGCACATAC--AGTGCATCATC-AGATAAACCAAAGCATCTATA
65 TA-AACCAAAGCATCTATAAT-G-ACAAACAAAGTGCATCATCGA-ATAAATCGAAGCATCTATA
* *
41795 TTGA
126 CTAA
* * * * * * * * * * * **
41799 CACGCATAGTGCATCAT-TAGGTAAATCGAAACATCTATACTGGCACCCACAGTGCACCATCGAA
1 CACACACAATGCATCATCGA-ATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAA
* * * *
41863 TAAACCGAAGCATTTATACTCGCACATAC--AGTGCATCATCGAATAAATCGAAGCATCTATACT
65 TAAACCAAAGCATCTATAAT-G-ACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACT
**
41926 GG
128 AA
* * * * * * * * ** ** * *
41928 CACACATAGTGTATCACCGGATAAATCGAAACATCTATCCTGATACACACAATGCATCATCGGAT
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
* * * ** * * ** *
41993 AAACTAAAGCATCTATACTGGCACGCAAAGTGCATCATCTG-GTAAACCGAAAAATCTATACTCG
66 AAACCAAAGCATCTATAATGACAAACAAAGTGCATCATC-GAATAAATCGAAGCATCTATACT-A
42057 A
129 A
* * ** * * * * *
42058 -ACACACATTTCATCATCGGGTAAACCTAAGCATCTATATTGGCACACGCAGTGCATCATTC-AA
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCAT-AATCGAA
* * * * * * *
42121 TAAACCAATGCATTTA-AACT-AGCACACACAGTGCATCATC-AGTAAATTGAGGCATCTATACT
65 TAAACCAAAGCATCTATAA-TGA-CAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACT
*
42183 AG
128 AA
* * *** * * * * * *
42185 CACACAGAGTGCATCATCTCGTAAACTG-AGACATCTATACTGGTACACACAATGCATTATCGAG
1 CACACACAATGCATCATCGAATAAACCGAAG-CATATATATTGGCACACACAATGCATAATCGAA
* * * * * * * * * *
42249 TAAATCGAGGAATCTATATTGGC--AC--AGTACATCATC-AGGTAAATCGAGGCATCTATACTT
65 TAAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGA-ATAAATCGAAGCATCTATACTA
*
42309 G
129 A
* * * * * * *
42310 CACACATAGTGCATCATCGAGTAAACCGAGGCATTTATACTGGCACACACAGTGCA
1 CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCA
42366 ACATTGGGTA
Statistics
Matches: 1739, Mismatches: 442, Indels: 272
0.71 0.18 0.11
Matches are distributed among these distances:
111 17 0.01
112 1 0.00
113 4 0.00
115 42 0.02
116 18 0.01
117 3 0.00
118 70 0.04
119 8 0.00
120 16 0.01
121 12 0.01
122 4 0.00
123 172 0.10
124 190 0.11
125 187 0.11
126 32 0.02
127 181 0.10
128 99 0.06
129 663 0.38
130 13 0.01
131 6 0.00
132 1 0.00
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (129 bp):
CACACACAATGCATCATCGAATAAACCGAAGCATATATATTGGCACACACAATGCATAATCGAAT
AAACCAAAGCATCTATAATGACAAACAAAGTGCATCATCGAATAAATCGAAGCATCTATACTAA
Found at i:40525 original size:72 final size:74
Alignment explanation
Indices: 40400--40536 Score: 172
Period size: 72 Copynumber: 1.9 Consensus size: 74
40390 CACACTGTGC
* * * * * * *
40400 ATCATCGTATAAACTGAAGCATCTATCCTGACACACACAGTGCATCATCGGATACACCG-AGCAT
1 ATCATCGAATAAACTGAAGCATCTACCCTGACAAACACAATACATAATCGGATAAACCGAAGCAT
40464 ACAGAATGT
66 ACAGAATGT
*
40473 ATCATCGAATAAAC-GAAGCATCTACCCT-AGCAAACACAATACATAATTGGATAAACCGAAGCA
1 ATCATCGAATAAACTGAAGCATCTACCCTGA-CAAACACAATACATAATCGGATAAACCGAAGCA
40536 T
65 T
40537 CTATACTGGC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
71 1 0.02
72 35 0.65
73 18 0.33
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (74 bp):
ATCATCGAATAAACTGAAGCATCTACCCTGACAAACACAATACATAATCGGATAAACCGAAGCAT
ACAGAATGT
Found at i:40609 original size:43 final size:43
Alignment explanation
Indices: 40546--42365 Score: 691
Period size: 43 Copynumber: 43.2 Consensus size: 43
40536 TCTATACTGG
* * * *
40546 CATACTGCATCATCGGATAAATCGAAAAATCTAAACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * **
40589 CACAGTGCATCATTGAATAAATCAAAACATCTATACTAAAACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * *
40632 CATAGTGTATCATCGAATACACCGAAACATCTATACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
*
40675 C--A---CATCATCGAATAAA-CTGAAGCATCTATACTAGCACA
1 CATAGTGCATCATCGAATAAATC-GAAACATCTATACTAGCACA
* * *
40713 CATAGTGCATCATCAAATAAATCGAAGCATCTATACTAACACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* *** * * *
40756 CATAGTGCATCATCGAATAAACCGTGGCATCTATATTGGTACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * *
40799 CACAGTGCACCATCAAATAAATCGTAACATCTATACT-GACACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAG-CACA
* * * * * *
40842 TATAATGCCTCATAGGATAAA-CTGAAGCATCTATACT-G-ACA
1 CATAGTGCATCATCGAATAAATC-GAAACATCTATACTAGCACA
* * ** ** * *
40883 TGTAAAGTGCATCATCGGGTAAAAAGAAGCATCTATATTAGCA-A
1 --CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * * * * *
40927 CTATAGTGCATCATCGGGA-AAACCCAAGCATCTAAACTGGTACA
1 C-ATAGTGCATCATC-GAATAAATCGAAACATCTATACTAGCACA
* * * *
40971 CTTAGTGCATCATCGAATAAATTGAAGCATCTATACTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * * * *
41014 CACAGTGCATCATCGAATAAACCGAAGCATTTATTC-AGTTACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAG-CACA
* * * *
41057 CAAAGTGCATCATCGAATAAACCGAAGCATCTATA-TTGACACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAG-CACA
* * * * * * * *
41100 CAAAATGCATCATCGGATAAA-CAAAAGAATCTATATTAGAAGA
1 CATAGTGCATCATCGAATAAATCGAAA-CATCTATACTAGCACA
* * * * * * *
41143 CAGA-TTC-TCATCGGATAAAAT-GAAGCATTTATA-TTGACAAA
1 CATAGTGCATCATCGAAT-AAATCGAAACATCTATACTAG-CACA
* * * * * *
41184 CATAGAGTATCATCTG-ATACATCGAAATATCTACACTGGCACA
1 CATAGTGCATCATC-GAATAAATCGAAACATCTATACTAGCACA
* * * * * *
41227 CACAGTGCATCATTGGATAAATTGAAGCATCTATACTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * *
41270 CAT--TGTAACATCGAATAAA-CCAAAGCATCTATACTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAA-CATCTATACTAGCACA
* * * * * *
41311 C--AGTGCAAT-ATCGGATAAA-CTAAAGAATATATATTGGCACA
1 CATAGTGC-ATCATCGAATAAATCGAAA-CATCTATACTAGCACA
* * * * * *
41352 CACAATGCATTATCTG-ATAAATTGAACCATCTATACTAGCAAA
1 CATAGTGCATCATC-GAATAAATCGAAACATCTATACTAGCACA
* * * * * *
41395 CAAAGT---TCATTGAATACA-CTGAAACACCTATATTGGCGA-A
1 CATAGTGCATCATCGAATAAATC-GAAACATCTATACTAGC-ACA
* * * * * *
41435 CAAAGTGCATCA--G-ATACACCGAAACACCTATACTGGGACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * *
41475 CACATTACATCATC-AGATAAA-CTAAAGCATC---ACT-GTCACA
1 CATAGTGCATCATCGA-ATAAATCGAAA-CATCTATACTAG-CACA
* * *
41515 CATAATGCATCATCGAATAAACCGAAGCATCTATACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * *
41558 CAT--TACATCATCAAATAAATCGAAGCAAT-TATACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAAC-ATCTATACTAGCACA
* * *
41599 CATAGTGCATCATCGGATAAA-CTGAAGCATCTATA-TTG-ACA
1 CATAGTGCATCATCGAATAAATC-GAAACATCTATACTAGCACA
* * * * * * * * *
41640 CATAAAATGCATTATTGGATTAA-CTGCAGCATCTATATTGGCACA
1 CAT--AGTGCATCATCGAATAAATC-GAAACATCTATACTAGCACA
* * * *
41685 CACAGTGGATCATCGAATAAA-C--TA-A--T-GAC-A-CACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * *
41719 -A-AGTGCATCATCGGATATATCGAAACAACTATACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * * *
41760 TACAGTGCATCATC-AGATAAA-CCAAAGCATCTATA-TTGACACG
1 CATAGTGCATCATCGA-ATAAATCGAAA-CATCTATACTAG-CACA
* * * *
41803 CATAGTGCATCAT-TAGGTAAATCGAAACATCTATACTGGCACC
1 CATAGTGCATCATCGA-ATAAATCGAAACATCTATACTAGCACA
* * * * * *
41846 CACAGTGCACCATCGAATAAACCGAAGCATTTATACTCGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * *
41889 TACAGTGCATCATCGAATAAATCGAAGCATCTATACTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* * * * *
41932 CATAGTGTATCACCGGATAAATCGAAACATCTATCCTGATACACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACT-A-GCACA
* * * *
41977 CA-A-TGCATCATCGGATAAA-CTAAAGCATCTATACTGGCACG
1 CATAGTGCATCATCGAATAAATCGAAA-CATCTATACTAGCACA
* * * * * *
42018 CAAAGTGCATCATCTG-GTAAACCGAAAAATCTATACTCGAACA
1 CATAGTGCATCATC-GAATAAATCGAAACATCTATACTAGCACA
* * * ** * * * * *
42061 CACATTTCATCATCGGGTAAACCTAAGCATCTATATTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
** * * * *
42104 CGCAGTGCATCATTC-AATAAA-CCAATGCATTTAAACTAGCACA
1 CATAGTGCATCA-TCGAATAAATCGAA-ACATCTATACTAGCACA
* * * **
42147 CACAGTGCATCATC-AGTAAATTGAGGCATCTATACTAGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
* *** * * *
42189 CAGAGTGCATCATCTCGTAAA-CTGAGACATCTATACTGGTACA
1 CATAGTGCATCATCGAATAAATC-GAAACATCTATACTAGCACA
* * * * * * *
42232 CACAATGCATTATCGAGTAAATCGAGGA-ATCTATA-TTG-GCA
1 CATAGTGCATCATCGAATAAATCGA-AACATCTATACTAGCACA
* * ** *
42273 C--AGTACATCATC-AGGTAAATCGAGGCATCTATACTTGCACA
1 CATAGTGCATCATCGA-ATAAATCGAAACATCTATACTAGCACA
* * ** * *
42314 CATAGTGCATCATCGAGTAAACCGAGGCATTTATACTGGCACA
1 CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
*
42357 CACAGTGCA
1 CATAGTGCA
42366 ACATTGGGTA
Statistics
Matches: 1370, Mismatches: 298, Indels: 218
0.73 0.16 0.12
Matches are distributed among these distances:
32 15 0.01
33 2 0.00
34 4 0.00
35 1 0.00
36 2 0.00
37 2 0.00
38 35 0.03
39 30 0.02
40 92 0.07
41 146 0.11
42 86 0.06
43 906 0.66
44 37 0.03
45 12 0.01
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (43 bp):
CATAGTGCATCATCGAATAAATCGAAACATCTATACTAGCACA
Found at i:40701 original size:38 final size:39
Alignment explanation
Indices: 39933--40777 Score: 208
Period size: 43 Copynumber: 20.4 Consensus size: 39
39923 CACACACAGT
* *
39933 GCATCATCGAATAAACTGAAGCATCTATATTGGCACACA
1 GCATCATCGAATAAACTGAAGCATCTATACTAGCACACA
* ** * * *
39972 GTGCATTATCGAATAAACCAAAGCATGTATAATGGCACACAAA
1 --GCATCATCGAATAAACTGAAGCATCTATACTAGCACAC--A
* * *
40015 GTGTATCATCGAATAAA-TCGAAGCATCTATACTAACACGGATAA
1 --GCATCATCGAATAAACT-GAAGCATCTATACTAGCAC--A-CA
* * * * *
40059 TGCATCATCGGATAAACCGTAA-CATATATATTGGCACACA
1 -GCATCATCGAATAAACTG-AAGCATCTATACTAGCACACA
* * *
40099 -CAATGCATCAAATGATAAACTGAAGCATCTATA-TTGACAAGCAAA
1 GC-AT-CATC-GA--ATAAACTGAAGCATCTATACTAG-C-A-CACA
* * *
40144 GTGCATCATCGAGTAAACCT-AAGCGTCTATACTGGCACACACA
1 --GCATCATCGAATAAA-CTGAAGCATCTATACTAG--CACACA
* * *
40187 GTGCATCATCGAATAAATTGAAGCATCTATATTGGCACACACA
1 --GCATCATCGAATAAACTGAAGCATCTATACTAG--CACACA
* ** * * * *
40230 GTGCATTATCGAATAAACCAAAGCATGTATAATGGCAAACAAA
1 --GCATCATCGAATAAACTGAAGCATCTATACTAGC--ACACA
* *
40273 GTGCATCATCAAATAAA-TCGAAGCATCTATACTCGCACAC-
1 --GCATCATCGAATAAACT-GAAGCATCTATACTAGCACACA
* * *
40313 -CATCATCAAATAAA-TCAAAGCATCTATACTGGCACACACA
1 GCATCATCGAATAAACT-GAAGCATCTATACTAG--CACACA
** *
40353 GTGCATCATC-ATATAAACCAAAGCATCTATACTGGCACACA
1 --GCATCATCGA-ATAAACTGAAGCATCTATACTAGCACACA
* * *
40394 CTGTGCATCATCGTATAAACTGAAGCATCTATCCTGACACACACA
1 ----GCATCATCGAATAAACTGAAGCATCTATACT-A-GCACACA
* * * *
40439 GTGCATCATCGGATACACCG-AG---C-ATAC-AG-A-A-T
1 --GCATCATCGAATAAACTGAAGCATCTATACTAGCACACA
* **
40471 GTATCATCGAATAAAC-GAAGCATCTACCCTAGCAAACACAA
1 GCATCATCGAATAAACTGAAGCATCTATACTAGC--ACAC-A
* * * * * * * *
40512 TACATAATTGGATAAACCGAAGCATCTATACTGGCATACT
1 -GCATCATCGAATAAACTGAAGCATCTATACTAGCACACA
* ** *
40552 GCATCATCGGATAAA-TCGAAAAATCTAAACTAGCACACACA
1 GCATCATCGAATAAACT-GAAGCATCTATACTAG--CACACA
* * * * *
40593 GTGCATCATTGAATAAA-TCAAAACATCTATACTAAAACACATA
1 --GCATCATCGAATAAACT-GAAGCATCTATACT--AGCACACA
* * * *
40636 GTGTATCATCGAATACACCGAAACATCTATACTAGCACACA
1 --GCATCATCGAATAAACTGAAGCATCTATACTAGCACACA
40677 -CATCATCGAATAAACTGAAGCATCTATACTAGCACACATA
1 GCATCATCGAATAAACTGAAGCATCTATACTAGCACAC--A
* *
40717 GTGCATCATCAAATAAA-TCGAAGCATCTATACTAACACACATA
1 --GCATCATCGAATAAACT-GAAGCATCTATACTAGCACAC--A
40760 GTGCATCATCGAATAAAC
1 --GCATCATCGAATAAAC
40778 CGTGGCATCT
Statistics
Matches: 621, Mismatches: 114, Indels: 135
0.71 0.13 0.16
Matches are distributed among these distances:
29 1 0.00
30 15 0.02
33 2 0.00
34 3 0.00
35 2 0.00
36 1 0.00
37 30 0.05
38 38 0.06
39 33 0.05
40 6 0.01
41 57 0.09
42 20 0.03
43 383 0.62
44 9 0.01
45 14 0.02
46 4 0.01
47 2 0.00
48 1 0.00
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (39 bp):
GCATCATCGAATAAACTGAAGCATCTATACTAGCACACA
Found at i:40702 original size:124 final size:125
Alignment explanation
Indices: 40523--40779 Score: 347
Period size: 124 Copynumber: 2.1 Consensus size: 125
40513 ACATAATTGG
* * * * *
40523 ATAAACCGAAGCATCTATACTGGCATACTGCATCATCGGATAAATCGAAAAATCTAAACTAGCAC
1 ATAAACCGAAACATCTATACTAGCACACTACATCATCGAATAAATCGAAAAATCTAAACTAGCAC
** *
40588 ACACAGTGCATCATTGAATAAATCAAAACATCTATACTAAAACACATAGTGTATCATCGA
66 ACACAGTGCATCATCAAATAAATCAAAACATCTATACTAAAACACATAGTGCATCATCGA
* ** *
40648 ATACACCGAAACATCTATACTAGCACAC-ACATCATCGAATAAA-CTGAAGCATCTATACTAGCA
1 ATAAACCGAAACATCTATACTAGCACACTACATCATCGAATAAATC-GAAAAATCTAAACTAGCA
* * * *
40711 CACATAGTGCATCATCAAATAAATCGAAGCATCTATACTAACACACATAGTGCATCATCGA
65 CACACAGTGCATCATCAAATAAATCAAAACATCTATACTAAAACACATAGTGCATCATCGA
40772 ATAAACCG
1 ATAAACCG
40780 TGGCATCTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 89 0.78
125 24 0.21
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (125 bp):
ATAAACCGAAACATCTATACTAGCACACTACATCATCGAATAAATCGAAAAATCTAAACTAGCAC
ACACAGTGCATCATCAAATAAATCAAAACATCTATACTAAAACACATAGTGCATCATCGA
Found at i:40800 original size:86 final size:86
Alignment explanation
Indices: 40473--44118 Score: 1000
Period size: 86 Copynumber: 43.1 Consensus size: 86
40463 TACAGAATGT
** * * * * * * *
40473 ATCATCGAATAAA-CGAAGCATCTACCCTAGCAAACACAATACATAATTGGATAAACCGAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
*
40537 CTATACTGG----CATACTGC
66 CTATACTGGTACACATAGTGC
* ** * * * * * *
40554 ATCATCGGATAAATCGAAAAATCTAAACTAGCACACACAGTGCATCATTGAATAAATCAAAACAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
*** *
40619 CTATACTAAAACACATAGTGT
66 CTATACTGGTACACATAGTGC
* * * *
40640 ATCATCGAATACACCGAAACATCTATACTAGCACAC--A---CATCATCGAATAAACTGAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* *
40700 CTATACTAGCACACATAGTGC
66 CTATACTGGTACACATAGTGC
* * **
40721 ATCATCAAATAAATCGAAGCATCTATACTAACACACATAGTGCATCATCGAATAAACCGTGGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* *
40786 CTATATTGGTACACACAGTGC
66 CTATACTGGTACACATAGTGC
* * * * * * * *
40807 ACCATCAAATAAATCGTAA-CATCTATACT-GACACATATAATGCCTCATAGGATAAACTGAAGC
1 ATCATCGAATAAATCG-AAGCATCTATACTAG-CACACATAGTGCATCATCGAATAAACCGAAGC
* *
40870 ATCTATACT-G-ACATGTAAAGTGC
64 ATCTATACTGGTACA--CATAGTGC
** ** * * *
40893 ATCATCGGGTAAAAAGAAGCATCTATATTAGCA-ACTATAGTGCATCATCGGGA-AAACCCAAGC
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACAC-ATAGTGCATCATC-GAATAAACCGAAGC
* *
40956 ATCTAAACTGGTACACTTAGTGC
64 ATCTATACTGGTACACATAGTGC
* * *
40979 ATCATCGAATAAATTGAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAACCGAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* * * * *
41044 TTATTCAGTTACACAAAGTGC
66 CTATACTGGTACACATAGTGC
* * * * * ** *
41065 ATCATCGAATAAACCGAAGCATCTATA-TTGACACACAAAATGCATCATCGGATAAACAAAAGAA
1 ATCATCGAATAAATCGAAGCATCTATACTAG-CACACATAGTGCATCATCGAATAAACCGAAGCA
* * * * * *
41129 TCTATATTAGAAGACAGA-TTC
65 TCTATACTGGTACACATAGTGC
* * * * * * * * *
41150 -TCATCGGATAAAAT-GAAGCATTTATA-TTGACAAACATAGAGTATCATCTG-ATACATCGAAA
1 ATCATCGAAT-AAATCGAAGCATCTATACTAG-CACACATAGTGCATCATC-GAATAAACCGAAG
* * * *
41211 TATCTACACTGGCACACACAGTGC
63 CATCTATACTGGTACACATAGTGC
* * * * * * *
41235 ATCATTGGATAAATTGAAGCATCTATACTGGCACACAT--TGTAACATCGAATAAACCAAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
*
41298 CTATACTGG--CACACAGTGC
66 CTATACTGGTACACATAGTGC
* * * * * * * * * ** *
41317 AAT-ATCGGATAAA-CTAAAGAATATATATTGGCACACACAATGCATTATCTG-ATAAATTGAAC
1 -ATCATCGAATAAATC-GAAGCATCTATACTAGCACACATAGTGCATCATC-GAATAAACCGAAG
* * * *
41379 CATCTATACTAGCAAACAAAGT--
63 CATCTATACTGGTACACATAGTGC
* * * * * * * * *
41401 -TCATTGAATACA-CTGAAACACCTATATTGGCGA-ACAAAGTGCATCA--G-ATACACCGAAAC
1 ATCATCGAATAAATC-GAAGCATCTATACTAGC-ACACATAGTGCATCATCGAATAAACCGAAGC
* * * * *
41460 ACCTATACTGGGACACACATTAC
64 ATCTATACTGGTACACATAGTGC
* *
41483 ATCATC-AGATAAA-CTAAAGCATC---ACT-GTCACACATAATGCATCATCGAATAAACCGAAG
1 ATCATCGA-ATAAATC-GAAGCATCTATACTAG-CACACATAGTGCATCATCGAATAAACCGAAG
* * *
41542 CATCTATACTAGCACACAT--TAC
63 CATCTATACTGGTACACATAGTGC
* * *
41564 ATCATCAAATAAATCGAAGCAAT-TATACTAGCACACATAGTGCATCATCGGATAAACTGAAGCA
1 ATCATCGAATAAATCGAAGC-ATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCA
* *
41628 TCTATA-TTG-ACACATAAAATGC
65 TCTATACTGGTACACAT--AGTGC
* * * * * * * * * *
41650 ATTATTGGATTAA-CTGCAGCATCTATATTGGCACACACAGTGGATCATCGAATAAA-CTAATG-
1 ATCATCGAATAAATC-GAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAA-GC
41712 A-C---AC----ACA-A-AGTGC
64 ATCTATACTGGTACACATAGTGC
* * * * * * *
41725 ATCATCGGATATATCGAAACAACTATACTAGCACATACAGTGCATCATC-AGATAAACCAAAGCA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGA-ATAAACCGAAGCA
* ** *
41789 TCTATATTGACACGCATAGTGC
65 TCTATACTGGTACACATAGTGC
* * * * * * *
41811 ATCAT-TAGGTAAATCGAAACATCTATACTGGCACCCACAGTGCACCATCGAATAAACCGAAGCA
1 ATCATCGA-ATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCA
* * * * *
41875 TTTATACTCGCACATACAGTGC
65 TCTATACTGGTACACATAGTGC
* * * * * *
41897 ATCATCGAATAAATCGAAGCATCTATACTGGCACACATAGTGTATCACCGGATAAATCGAAACAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* * * *
41962 CTATCCTGATACACACAATGC
66 CTATACTGGTACACATAGTGC
* * * * * * **
41983 ATCATCGGATAAA-CTAAAGCATCTATACTGGCACGCAAAGTGCATCATCTG-GTAAACCGAAAA
1 ATCATCGAATAAATC-GAAGCATCTATACTAGCACACATAGTGCATCATC-GAATAAACCGAAGC
* * * * *
42046 ATCTATACTCGAACACACATTTC
64 ATCTATACTGGTACACATAGTGC
** * * * * **
42069 ATCATCGGGTAAACCTAAGCATCTATATTGGCACACGCAGTGCATCATTC-AATAAACC-AATGC
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCA-TCGAATAAACCGAA-GC
* * * * *
42132 ATTTAAACTAGCACACACAGTGC
64 ATCTATACTGGTACACATAGTGC
* * * * *** *
42155 ATCATC-AGTAAATTGAGGCATCTATACTAGCACACAGAGTGCATCATCTCGTAAACTG-AGACA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAG-CA
* *
42218 TCTATACTGGTACACACAATGC
65 TCTATACTGGTACACATAGTGC
* * * * * * * * * *
42240 ATTATCGAGTAAATCGAGGAATCTATA-TTG-GCAC--AGTACATCATC-AGGTAAATCGAGGCA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGA-ATAAACCGAAGCA
* *
42300 TCTATACTTGCACACATAGTGC
65 TCTATACTGGTACACATAGTGC
* * * * * * * * ** * *
42322 ATCATCGAGTAAACCGAGGCATTTATACTGGCACACACAGTGCAACATTGGGTAAACCGAGGAAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* * * *
42387 TTACACTGGGACACAAAGTGC
66 CTATACTGGTACACATAGTGC
* * * * * * * ** ** * *
42408 ATCATC-AAGTAAATTGAGGCATCTATATTGGTACACACAGTGCAAT-ATTGGGTAAATTGAGGT
1 ATCATCGAA-TAAATCGAAGCATCTATACTAGCACACATAGTGC-ATCATCGAATAAACCGAAGC
* * * *
42471 ATTTATA-TAG-ACACACAAATGC
64 ATCTATACTGGTACACA-TAGTGC
** * * * * ** *
42493 ATCATCGGGTTAACCCAAACATCTATACT------CA-A-TGC-T--TCGGGTAAATCGAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* * *
42547 CTATA-TAGGCACATACAGTGC
66 CTATACT-GGTACACATAGTGC
** * * * * * * ** *
42568 ATCATCGGGTAAATCGAGGTATCTATATTGGCACACATAATACATCATCGGGTAAATCGAAGCAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* ** *
42633 CTATACTAGCGCACACAGTGC
66 CTATACTGGTACACATAGTGC
* * * * * *
42654 ATCATC-AGGTAAA-CTGAGGTATCTAGT-CTAGCACACACAATGCATCATCGAGTAAACCG-AG
1 ATCATCGA-ATAAATC-GAAGCATCTA-TACTAGCACACATAGTGCATCATCGAATAAACCGAAG
* * *
42715 ACATTTATAC--GAACACATACAGTGT
63 -CATCTATACTGGTACACAT--AGTGC
* * * * * *
42740 ATCATCGAGTAAA-CTAATGCATCTATACT-GACACACACAGTGTATCATTTG-ATAAACCGAGG
1 ATCATCGAATAAATCGAA-GCATCTATACTAG-CACACATAGTGCATCA-TCGAATAAACCGAAG
* * * **
42802 TATCTATACTGGCACACACAGTAT
63 CATCTATACTGGTACACATAGTGC
* * * * * * * * *
42826 ATCATC-AAGTAAATCGAGGCATTTATACTGGCACACACAGTACATCATCGAGTAAATCGAGGCG
1 ATCATCGAA-TAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCA
** * * * *
42890 GGTAAATCAAGGAATCA-ATATTGGC
65 TCTATA-C-TGGTA-CACATAGT-GC
* * * * * *
42915 A-CA-C-ACAGTGCATTATCGGATAAACTGAGGCATCTA-TAGTGGCACACACAGTGTATCATCG
1 ATCATCGA-A-T--A-AATC-G--AAGC--A-TC-TATACTAG---CACACATAGTGCATCATCG
** * * * * * *
42976 GGTAAATCGAGGCATTTATACTGGCATACATAATGC
51 AATAAACCGAAGCATCTATACTGGTACACATAGTGC
** * * * * ** * * *
43012 ATCATCGGGTAAATCGAGGCATTTATACTGGTACAC--AGTGCATCATCGGGTAAATCGAGGAAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
*
43075 CTATAC---TA-ACACAGTGC
66 CTATACTGGTACACATAGTGC
** * * * * * * * * * * *
43092 ATCATCGGGTAAATCAAAACATCTATACTCGCATAC--AGTACAACATAGAGTAAATCGAGGTAT
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
* * *
43155 CTATACAGGCACACACAGTGC
66 CTATACTGGTACACATAGTGC
* ** * * *
43176 ATCATTGGTTAAAT-TAAGGCATCTATACTAGCACAC-T-GTGCATCATCGAGTAAACCGAAGCG
1 ATCATCGAATAAATCGAA-GCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCA
* * * *
43238 TCTATACTTGCACAAACAGTGC
65 TCTATACTGGTACACATAGTGC
* ** * * * * * *
43260 ATCATTGGTTAAA-CCAAGGAATCTATACTGGCATACATAGTGCATCATCTG-GTAAATCG-AGA
1 ATCATCGAATAAATCGAA-GCATCTATACTAGCACACATAGTGCATCATC-GAATAAACCGAAG-
*
43322 CATCTATACTGGCACACA-AGTGC
63 CATCTATACTGGTACACATAGTGC
** * * * * * ** * *
43345 ATCATCGGGTAAATCGAGGCATCTATACT-GTTACACAAAATGCATAATCGGGTAAGCCGAGGCA
1 ATCATCGAATAAATCGAAGCATCTATACTAG-CACACATAGTGCATCATCGAATAAACCGAAGCA
* * * *
43409 TTTATACTGGCACACAAAATGC
65 TCTATACTGGTACACATAGTGC
* * * * ** *
43431 ATCATC-AGGTAAACCGATA-CAT-T-TA-TA--ACACAGAGTGCATCATCGAGTAGGCCGAGGG
1 ATCATCGA-ATAAATCGA-AGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGA-AG
* * * *
43489 C-TTTATACTAGCACACACAGTGC
63 CATCTATACTGGTACACATAGTGC
* * * * * * * *
43512 ATCATCGAGTAAACCGAGGCATTTATACTAGCACACATAGTGTATCATTTG-ATAAATCGAGGCA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCA-TCGAATAAACCGAAGCA
* * * *
43576 TCTATACTAGCACACACAATGC
65 TCTATACTGGTACACATAGTGC
* * * * * * ** * *
43598 ATCATC-AAGTAAATCGAGGAATCTATATTGGCTCACACAGTGCATCATCGGGTAAACTGAGGCA
1 ATCATCGAA-TAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCA
* * * *
43662 TCTATATTGACT-CACACAGTAC
65 TCTATACTG-GTACACATAGTGC
* * * * * * * * * * * * * *
43684 ATTATCGAGTAATATTG-GGAATTTATATTGGAACACACAATGCATCATC-AGGTAAATCGAGGC
1 ATCATCGAATAA-ATCGAAGCATCTATACTAGCACACATAGTGCATCATCGA-ATAAACCGAAGC
* *
43747 ATTTATACTGGTACAC--AGTGT
64 ATCTATACTGGTACACATAGTGC
* * * * * * * * * *
43768 ATCAACTG-GTAAATCGAGGCATCTATACTAGCACATACAATGCATTATC-AGGTAAACCGAGGA
1 ATCATC-GAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGA-ATAAACCGAAGC
* *
43831 ATCTATACTGGCACACATAATGC
64 ATCTATACTGGTACACATAGTGC
* ** * ** * * * *
43854 ATTATCGGGTAAATCGAAGCGTCTATACTTTCATAC--AGTGCATCATCGAGTAAATCG-AGAAA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAG-CA
* * *
43916 TCTATACTGGCACACACAGTGT
65 TCTATACTGGTACACATAGTGC
* * * * * * * * *
43938 ATCATCGAGTAAACCGAGGCATCTATACTGGCAGACAGAGTGCATCATCGAGTAAATC-AAGAAA
1 ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAG-CA
*
44002 TCTATACTGGGT-CACACAGTGC
65 TCTATACT-GGTACACATAGTGC
* * * * *
44024 ATTAT-TATATAAATTGAAGCATCTATACT-GACACACA-A-TGCAT-ATTCGGATAAATCGAAG
1 ATCATCGA-ATAAATCGAAGCATCTATACTAG-CACACATAGTGCATCA-TCGAATAAACCGAAG
* ** * *
44084 CATTTATACTGACACACAAAGTGA
63 CATCTATACTGGTACACATAGTGC
*
44108 ATCGTCGAATA
1 ATCATCGAATA
44119 TACCGAAGTA
Statistics
Matches: 2730, Mismatches: 626, Indels: 415
0.72 0.17 0.11
Matches are distributed among these distances:
74 20 0.01
75 74 0.03
76 9 0.00
77 4 0.00
78 2 0.00
79 7 0.00
80 103 0.04
81 161 0.06
82 161 0.06
83 93 0.03
84 473 0.17
85 214 0.08
86 1273 0.47
87 39 0.01
88 23 0.01
89 5 0.00
90 2 0.00
91 3 0.00
92 3 0.00
94 3 0.00
95 3 0.00
96 2 0.00
97 6 0.00
98 13 0.00
99 2 0.00
100 32 0.01
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (86 bp):
ATCATCGAATAAATCGAAGCATCTATACTAGCACACATAGTGCATCATCGAATAAACCGAAGCAT
CTATACTGGTACACATAGTGC
Found at i:41486 original size:40 final size:40
Alignment explanation
Indices: 41382--41470 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
41372 ATTGAACCAT
* * * * *
41382 CTATACTAGCAAACAAAGTTCAT-TGAATACACTGAAACAC
1 CTATACTGGCGAACAAAGTACATCAG-ATACACCGAAACAC
* *
41422 CTATATTGGCGAACAAAGTGCATCAGATACACCGAAACAC
1 CTATACTGGCGAACAAAGTACATCAGATACACCGAAACAC
41462 CTATACTGG
1 CTATACTGG
41471 GACACACATT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (40 bp):
CTATACTGGCGAACAAAGTACATCAGATACACCGAAACAC
Found at i:41516 original size:40 final size:40
Alignment explanation
Indices: 41472--41633 Score: 109
Period size: 41 Copynumber: 4.0 Consensus size: 40
41462 CTATACTGGG
*
41472 ACACACATTACATCATCAGATAAACTAAAGCATC---ACT
1 ACACACATTACATCATCAGATAAACCAAAGCATCTATACT
* * *
41509 GTCACACATAATGCATCATC-GAATAAACCGAAGCATCTATACT
1 -ACACACAT--TACATCATCAG-ATAAACCAAAGCATCTATACT
* * *
41552 AGCACACATTACATCATCAAATAAATCGAAGCAAT-TATACT
1 A-CACACATTACATCATCAGATAAACCAAAGC-ATCTATACT
* * **
41593 AGCACACATAGTGCATCATCGGATAAACTGAAGCATCTATA
1 A-CACACAT--TACATCATCAGATAAACCAAAGCATCTATA
41634 TTGACACATA
Statistics
Matches: 99, Mismatches: 13, Indels: 19
0.76 0.10 0.15
Matches are distributed among these distances:
38 7 0.07
39 1 0.01
40 21 0.21
41 34 0.34
42 4 0.04
43 32 0.32
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.23
Consensus pattern (40 bp):
ACACACATTACATCATCAGATAAACCAAAGCATCTATACT
Found at i:41836 original size:161 final size:161
Alignment explanation
Indices: 41576--42031 Score: 389
Period size: 161 Copynumber: 2.8 Consensus size: 161
41566 CATCAAATAA
* * * * **
41576 ATCGAAGCAATTATACTAGCACACATAGTGCATCATCGGATAAACTGAAGCATCTATATTGACAC
1 ATCGAAACAACTATACTAGCACACACAGTGCATCATCAGATAAACCAAAGCATCTATATTGACAC
* * * * * * * *
41641 ATAAAATGCATTATTGGATTAACTGCAGCATCTATATTGGCACACACAGTGGATCATCGAATAAA
66 ACAAAATGCATCATTGGATAAACTGAAACATCTATACTGGCACACACAGTGCACCATCGAATAAA
41706 CTAATGACACACAAAGTGCATCATCGGATAT
131 CTAATGACACACAAAGTGCATCATCGGATAT
*
41737 ATCGAAACAACTATACTAGCACATACAGTGCATCATCAGATAAACCAAAGCATCTATATTGACAC
1 ATCGAAACAACTATACTAGCACACACAGTGCATCATCAGATAAACCAAAGCATCTATATTGACAC
* * * *
41802 GCATAGTGCATCATTAGG-TAAA-TCGAAACATCTATACTGGCACCCACAGTGCACCATCGAATA
66 ACAAAATGCATCATT-GGATAAACT-GAAACATCTATACTGGCACACACAGTGCACCATCGAATA
* * * * *
41865 AACCGAAGCATTTATACTCGCACATACAGTGCATCATCGAATAA
129 AA-C-TA--A--T-GA--CACACA-A-AGTGCATCATCGGATAT
* * * * * * * * ** *
41909 ATCGAAGCATCTATACTGGCACACATAGTGTATCACCGGATAAATCGAAA-CATCTATCCTGATA
1 ATCGAAACAACTATACTAGCACACACAGTGCATCATCAGATAAA-CCAAAGCATCTATATTGACA
* * * * *
41973 CACACAATGCATCATCGGATAAACT-AAAGCATCTATACTGGCACGCAAAGTGCATCATC
65 CACAAAATGCATCATTGGATAAACTGAAA-CATCTATACTGGCACACACAGTGCACCATC
42032 TGGTAAACCG
Statistics
Matches: 235, Mismatches: 43, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
160 1 0.00
161 106 0.45
162 3 0.01
163 1 0.00
165 1 0.00
167 1 0.00
168 1 0.00
170 5 0.02
171 6 0.03
172 105 0.45
173 5 0.02
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (161 bp):
ATCGAAACAACTATACTAGCACACACAGTGCATCATCAGATAAACCAAAGCATCTATATTGACAC
ACAAAATGCATCATTGGATAAACTGAAACATCTATACTGGCACACACAGTGCACCATCGAATAAA
CTAATGACACACAAAGTGCATCATCGGATAT
Found at i:42377 original size:43 final size:43
Alignment explanation
Indices: 41713--42888 Score: 697
Period size: 43 Copynumber: 27.7 Consensus size: 43
41703 AAACTAATGA
* * * * ** * *
41713 CACACAAAGTGCATCATCGGATATATCGAAACAACTATACTAG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * * * *
41756 CACATACAGTGCATCATCAGATAAACCAAAGCATCTATATTGA
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * ** * **
41799 CACGCATAGTGCATCATTAGGTAAATCGAAACATCTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * ** * * *
41842 CACCCACAGTGCACCATCGAATAAACCGAAGCATTTATACTCG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* ** * *
41885 CACATACAGTGCATCATCGAATAAATCGAAGCATCTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * * ** * *
41928 CACACATAGTGTATCACCGGATAAATCGAAACATCTATCCTGA
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * ** *
41971 TACACACAATGCATCATCGGATAAACTAAAGCATCTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * *** *
42014 CACGCAAAGTGCATCATCTGGTAAACCGAAAAATCTATACTCG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * * *
42057 AACACACATTTCATCATCGGGTAAACCTAAGCATCTATATTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* ** * * * * *
42100 CACACGCAGTGCATCATTC-AATAAACCAATGCATTTAAACTAG
1 CACACACAGTGCATCA-TCGGGTAAACCGAGGCATCTATACTGG
* ** *
42143 CACACACAGTGCATCATC-AGTAAATTGAGGCATCTATACTAG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* ** * *
42185 CACACAGAGTGCATCATCTCGTAAACTGAGACATCTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * * * *
42228 TACACACAATGCATTATCGAGTAAATCGAGGAATCTATATTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * *
42271 ----CACAGTACATCATCAGGTAAATCGAGGCATCTATACTTG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * *
42310 CACACATAGTGCATCATCGAGTAAACCGAGGCATTTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * *
42353 CACACACAGTGCAACATTGGGTAAACCGAGGAATTTACACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * ** ** *
42396 GACACAAAGTGCATCATCAAGTAAATTGAGGCATCTATATTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * ** * * *
42439 TACACACAGTGCAAT-ATTGGGTAAATTGAGGTATTTATA-TAG
1 CACACACAGTGC-ATCATCGGGTAAACCGAGGCATCTATACTGG
* * * **
42481 -ACACACAAATGCATCATCGGGTTAACCCAAACATCTATACT--
1 CACACAC-AGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* *
42522 ----CA-A-TGC-T--TCGGGTAAATCGAAGCATCTATA-TAGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACT-GG
* * * *
42556 CACATACAGTGCATCATCGGGTAAATCGAGGTATCTATATTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * * *
42599 CACACATAATACATCATCGGGTAAATCGAAGCATCTATACTAG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * * * *
42642 CGCACACAGTGCATCATCAGGTAAACTGAGGTATCTAGT-CTAG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTA-TACTGG
* * * * *
42685 CACACACAATGCATCATCGAGTAAACCGAGACATTTATAC-GAA
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTG-G
* * * ** * *
42728 CACATACAGTGTATCATCGAGTAAACTAATGCATCTATACTGA
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* ** * *
42771 CACACACAGTGTATCATTTGATAAACCGAGGTATCTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
** ** * *
42814 CACACACAGTATATCATCAAGTAAATCGAGGCATTTATACTGG
1 CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
* * *
42857 CACACACAGTACATCATCGAGTAAATCGAGGC
1 CACACACAGTGCATCATCGGGTAAACCGAGGC
42889 GGGTAAATCA
Statistics
Matches: 878, Mismatches: 228, Indels: 54
0.76 0.20 0.05
Matches are distributed among these distances:
31 1 0.00
32 19 0.02
34 1 0.00
35 3 0.00
36 1 0.00
38 3 0.00
39 32 0.04
40 3 0.00
41 9 0.01
42 58 0.07
43 741 0.84
44 7 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (43 bp):
CACACACAGTGCATCATCGGGTAAACCGAGGCATCTATACTGG
Found at i:42762 original size:129 final size:129
Alignment explanation
Indices: 42599--44060 Score: 470
Period size: 129 Copynumber: 11.4 Consensus size: 129
42589 TCTATATTGG
* * * * *
42599 CACACATAATACATCATCGGGTAAATCGAAGCATCTATACT-AGCGCACACAGTGCATCATCAGG
1 CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGA-CACACACAGTGCATCATCAGA
* * *
42663 TAAACTGAGGTATCTAGT-CTAGCACACACAATGCATCATCGAGTAAACCGAGACATTTATAC-G
65 TAAACCGAGGTATCTA-TACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTG
42726 AA
129 -A
* ** * * **
42728 CACATACAGTGTATCATCGAGTAAA-CTAATGCATCTATACTGACACACACAGTGTATCATTTGA
1 CACACACAGTACATCATCGAGTAAATCGAA-GCATCTATACTGACACACACAGTGCATCATCAGA
* * * * * *
42792 TAAACCGAGGTATCTATACTGGCACACACAGTATATCATCAAGTAAATCGAGGCATTTATACTGG
65 TAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTGA
* * *
42857 CACACACAGTACATCATCGAGTAAATCGAGGCGGGTAAATCAAGGAATCAATATTGGCACACACA
1 CACACACAGTACATCATCGAGTAAATCGAAGC------ATC------T--ATACTGACACACACA
* * * * * * * ** ** *
42922 GTGCATTATCGGATAAACTGAGGCATCTATAGTGGCACACACAGTGTATCATCGGGTAAATCGAG
52 GTGCATCATCAGATAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAG
* *
42987 GCATTTATACTGG
117 ACATTTATACTGA
* * * * * * * ** * *
43000 CATACATAATGCATCATCGGGTAAATCGAGGCATTTATACTG--GTACACAGTGCATCATCGGGT
1 CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGACACACACAGTGCATCATCAGAT
* * * * ** * * * *
43063 AAATCGAGGAATCTATACT---A-ACACAGTGCATCATCGGGTAAATCAAAACATCTATACT--
66 AAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTGA
* * * * * * * * ** *
43121 CGCATACAGTACAACATAGAGTAAATCGAGGTATCTATACAGGCACACACAGTGCATCATTGGTT
1 CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGACACACACAGTGCATCATCAGAT
*** * ** * * * *
43186 AAATTAAGGCATCTATACTAG--CACACTGTGCATCATCGAGTAAACCGA-AGCGTCTATACTTG
66 AAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGA-CATTTATAC-TG
43248 -
129 A
* * * * * * * * *
43248 CACAAACAGTGCATCATTG-GTTAAA-CCAAGGAATCTATACTGGCATACATAGTGCATCATCTG
1 CACACACAGTACATCATCGAG-TAAATCGAA-GCATCTATACTGACACACACAGTGCATCATCAG
* * ** * * * ** * * *
43311 GTAAATCGAGACATCTATACTGGCACACA-AGTGCATCATCGGGTAAATCGAGGCATCTATACTG
64 ATAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTG
*
43375 T
129 A
* * * * * * ** * * * * * *
43376 TACACAAAATGCATAATCGGGTAAGCCGAGGCATTTATACTGGCACACAAAATGCATCATCAGGT
1 CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGACACACACAGTGCATCATCAGAT
* * * * * ** *
43441 AAACCGA--TA-CATTTA-TA--ACACAGAGTGCATCATCGAGTAGGCCGAGGGC-TTTATACT-
66 AAACCGAGGTATC-TATACTAGCACACACAATACATCATCAAGTAAACCGA-GACATTTATACTG
43498 A
129 A
* * * * * * **
43499 GCACACACAGTGCATCATCGAGTAAACCGAGGCATTTATACT-AGCACACATAGTGTATCATTTG
1 -CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGA-CACACACAGTGCATCATCAG
* * * * * *
43563 ATAAATCGAGGCATCTATACTAGCACACACAATGCATCATCAAGTAAATCGAGGA-ATCTATATT
64 ATAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGA-GACATTTATACT
*
43627 GG
128 GA
* * * * * * * *
43629 CTCACACAGTGCATCATCGGGTAAA-CTGAGGCATCTATATTGACTCACACAGTACATTATC-GA
1 CACACACAGTACATCATCGAGTAAATC-GAAGCATCTATACTGACACACACAGTGCATCATCAGA
** * * * * * * * * *
43692 GTAATATTG-GGAATTTATATTGGAACACACAATGCATCATCAGGTAAATCGAGGCATTTATACT
65 -TAA-ACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACT
43756 G-
128 GA
** ** * * * * *
43757 -GTACACAGTGTATCAACTG-GTAAATCGAGGCATCTATACT-AGCACATACAATGCATTATCAG
1 CACACACAGTACATCATC-GAGTAAATCGAAGCATCTATACTGA-CACACACAGTGCATCATCAG
* * * * * * ** * * *
43819 GTAAACCGAGGAATCTATACTGGCACACATAATGCATTATCGGGTAAATCGA-AGCGTCTATACT
64 ATAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGA-CATTTATACT
43883 --
128 GA
** * * * * *
43883 TTCATACAGTGCATCATCGAGTAAATCG-AGAAATCTATACTGGCACACACAGTGTATCATC-GA
1 CACACACAGTACATCATCGAGTAAATCGAAG-CATCTATACTGACACACACAGTGCATCATCAGA
* * * * * * * * * * *
43946 GTAAACCGAGGCATCTATACTGGCAGACAGAGTGCATCATCGAGTAAATCAAGAAATCTATACTG
65 -TAAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTG
*
44011 G
129 A
** * * * * *
44012 GTCACACAGTGCATTAT-TATATAAATTGAAGCATCTATACTGACACACA
1 CACACACAGTACATCATCGA-GTAAATCGAAGCATCTATACTGACACACA
44061 ATGCATATTC
Statistics
Matches: 1037, Mismatches: 227, Indels: 138
0.74 0.16 0.10
Matches are distributed among these distances:
121 30 0.03
123 71 0.07
124 84 0.08
125 35 0.03
126 18 0.02
127 288 0.28
128 91 0.09
129 295 0.28
130 10 0.01
131 1 0.00
135 3 0.00
137 2 0.00
141 1 0.00
143 108 0.10
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (129 bp):
CACACACAGTACATCATCGAGTAAATCGAAGCATCTATACTGACACACACAGTGCATCATCAGAT
AAACCGAGGTATCTATACTAGCACACACAATACATCATCAAGTAAACCGAGACATTTATACTGA
Found at i:42958 original size:143 final size:143
Alignment explanation
Indices: 42771--43031 Score: 387
Period size: 143 Copynumber: 1.8 Consensus size: 143
42761 TCTATACTGA
* ** *
42771 CACACACAGTGTATCATTTGATAAACCGAGGTATCTATACTGGCACACACAGTATATCATCAAGT
1 CACACACAGTGCATCATCGGATAAACCGAGGCATCTATACTGGCACACACAGTATATCATCAAGT
*
42836 AAATCGAGGCATTTATACTGGCACACACAGTACATCATCGAGTAAATCGAGGCGGGTAAATCAAG
66 AAATCGAGGCATTTATACTGGCACACACAATACATCATCGAGTAAATCGAGGCGGGTAAATCAAG
42901 GAATCAATATTGG
131 GAATCAATATTGG
* * * * **
42914 CACACACAGTGCATTATCGGATAAACTGAGGCATCTATAGTGGCACACACAGTGTATCATCGGGT
1 CACACACAGTGCATCATCGGATAAACCGAGGCATCTATACTGGCACACACAGTATATCATCAAGT
* * * *
42979 AAATCGAGGCATTTATACTGGCATACATAATGCATCATCGGGTAAATCGAGGC
66 AAATCGAGGCATTTATACTGGCACACACAATACATCATCGAGTAAATCGAGGC
43032 ATTTATACTG
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
143 103 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (143 bp):
CACACACAGTGCATCATCGGATAAACCGAGGCATCTATACTGGCACACACAGTATATCATCAAGT
AAATCGAGGCATTTATACTGGCACACACAATACATCATCGAGTAAATCGAGGCGGGTAAATCAAG
GAATCAATATTGG
Found at i:42976 original size:43 final size:43
Alignment explanation
Indices: 42892--44106 Score: 757
Period size: 43 Copynumber: 28.8 Consensus size: 43
42882 TCGAGGCGGG
* * * * *
42892 TAAATCAAGGAATCAATATTGGCACACACAGTGCATTATCGGA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * *
42935 TAAA-CTGAGGCATCTATAGTGGCACACACAGTGTATCATCGGG
1 TAAATC-GAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * *
42978 TAAATCGAGGCATTTATACTGGCATACATAATGCATCATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * *
43021 TAAATCGAGGCATTTATACTGG--TACACAGTGCATCATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* *
43062 TAAATCGAGGAATCTATACT---A-ACACAGTGCATCATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* ** * * * * *
43101 TAAATCAAAACATCTATACT--CGCATACAGTACAACAT-AGA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * *
43141 GTAAATCGAGGTATCTATACAGGCACACACAGTGCATCATTGGT
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
** * *
43185 TAAATTAAGGCATCTATACTAG--CACACTGTGCATCATC-GA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * * * *
43225 GTAAACCGAAGCGTCTATACTTGCACAAACAGTGCATCATTGGT
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * *
43269 TAAACCAAGGAATCTATACTGGCATACATAGTGCATCATCTGG-
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATC-GGA
* *
43312 TAAATCGAGACATCTATACTGGCACACA-AGTGCATCATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
** * * * *
43354 TAAATCGAGGCATCTATACTGTTACACAAAATGCATAATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
** * * *
43397 TAAGCCGAGGCATTTATACTGGCACACAAAATGCATCATCAGG-
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATC-GGA
* ** * *
43440 TAAACCGATACAT-T-TA-T--AACACAGAGTGCATCATC-GA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
*** * *
43477 GTAGGCCGAGGGC-TTTATACTAGCACACACAGTGCATCATC-GA
1 -TAAATCGA-GGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * * **
43520 GTAAACCGAGGCATTTATACTAGCACACATAGTGTATCATTTGA
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * *
43564 TAAATCGAGGCATCTATACTAGCACACACAATGCATCATC-AA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * *
43606 GTAAATCGAGGAATCTATATTGGCTCACACAGTGCATCATCGGG
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * *
43650 TAAA-CTGAGGCATCTATATTGACTCACACAGTACATTATC-GA
1 TAAATC-GAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * * * * *
43692 GTAATATTG-GGAATTTATATTGGAACACACAATGCATCATCAGG-
1 -TAA-ATCGAGGCATCTATACTGGCACACACAGTGCATCATC-GGA
* * * *
43736 TAAATCGAGGCATTTATACTGG--TACACAGTGTATCAACTGG-
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATC-GGA
* * * *
43777 TAAATCGAGGCATCTATACTAGCACATACAATGCATTATCAGG-
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATC-GGA
* * * * * *
43820 TAAACCGAGGAATCTATACTGGCACACATAATGCATTATCGGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * ** *
43863 TAAATCGAAGCGTCTATACT--TTCATACAGTGCATCATC-GA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
** *
43903 GTAAATCGAGAAATCTATACTGGCACACACAGTGTATCATC-GA
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * *
43946 GTAAACCGAGGCATCTATACTGGCAGACAGAGTGCATCATC-GA
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* ** ** * ***
43989 GTAAATCAAGAAATCTATACTGGGTCACACAGTGCATTATTATA
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
* * *
44033 TAAATTGAAGCATCTATACT-G-ACACACAATGCAT-ATTCGGA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGCATCA-TCGGA
* * * *
44074 TAAATCGAAGCATTTATACTGACACACAAAGTG
1 TAAATCGAGGCATCTATACTGGCACACACAGTG
44107 AATCGTCGAA
Statistics
Matches: 927, Mismatches: 199, Indels: 92
0.76 0.16 0.08
Matches are distributed among these distances:
36 1 0.00
38 22 0.02
39 36 0.04
40 7 0.01
41 189 0.20
42 50 0.05
43 609 0.66
44 12 0.01
45 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (43 bp):
TAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCGGA
Found at i:43485 original size:81 final size:81
Alignment explanation
Indices: 43385--43538 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
43375 TTACACAAAA
* *
43385 TGCATAATCGGGTAAGCCGA-GGCATTTATACTGGCACACAAAATGCATCATC-AGGTAAACCGA
1 TGCATAATCGAGTAAGCCGAGGGC-TTTATACTAGCACACAAAATGCATCATCGA-GTAAACCGA
*
43448 TACATTTATAACACAGAG
64 GACATTTATAACACAGAG
* * * * *
43466 TGCATCATCGAGTAGGCCGAGGGCTTTATACTAGCACACACAGTGCATCATCGAGTAAACCGAGG
1 TGCATAATCGAGTAAGCCGAGGGCTTTATACTAGCACACAAAATGCATCATCGAGTAAACCGAGA
43531 CATTTATA
66 CATTTATA
43539 CTAGCACACA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 59 0.94
82 4 0.06
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (81 bp):
TGCATAATCGAGTAAGCCGAGGGCTTTATACTAGCACACAAAATGCATCATCGAGTAAACCGAGA
CATTTATAACACAGAG
Found at i:43815 original size:127 final size:127
Alignment explanation
Indices: 42890--44025 Score: 634
Period size: 127 Copynumber: 9.0 Consensus size: 127
42880 AATCGAGGCG
* * * * * * * *
42890 GGTAAATCAAGGAATCAATATTGGCACACACAGTGCATTATCG-GATAAACTGAGGCATCTATAG
1 GGTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGAG-TAAACCGAGGAATCTATAC
* * * * * * *
42954 TGGCACACACAGTGTATCATCGGGTAAATCGAGGCATTTATACTGG-CATACATAATGCATCATC
65 TGGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGGTC--ACACAGTGCATCATC
* ** * * *
43018 GGGTAAATCGAGGCATTTATACT-G-GTACACAGTGCATCATCGGGTAAATCGAGGAATCTATAC
1 -GGTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGAGTAAACCGAGGAATCTATAC
* * * ** * * * * *
43081 T---A-ACACAGTGCATCATCGGGTAAATCAAAACATCTATACTCG-CATACAGTACAACATA
65 TGGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGGTCACACAGTGCATCATC
* * * *** *
43139 GAGTAAATCGAGGTATCTATAC-AGGCACACACAGTGCATCATTG-GTTAAATTAAGGCATCTAT
1 G-GTAAATCGAGGCATCTATACTA-GCACACACAGTGCATTATCGAG-TAAACCGAGGAATCTAT
* ** * * * *
43202 ACT--AGCACACTGTGCATCATC-GAGTAAACCGAAGCGTCTATACTTG-CACAAACAGTGCATC
63 ACTGGAACACACAATGCATCATCAG-GTAAATCGAGGCATCTATACTGGTCAC--ACAGTGCATC
*
43263 ATT
125 ATC
* * * * * * * *
43266 GGTTAAACCAAGGAATCTATACTGGCATACATAGTGCATCATCTG-GTAAATCGA-GACATCTAT
1 GG-TAAATCGAGGCATCTATACTAGCACACACAGTGCATTATC-GAGTAAACCGAGGA-ATCTAT
* * * * *
43329 ACTGG--CACACAAGTGCATCATCGGGTAAATCGAGGCATCTATACTGTTACACAAAATGCATAA
63 ACTGGAACACACAA-TGCATCATCAGGTAAATCGAGGCATCTATACTGGT-CACACAGTGCATCA
43392 TC
126 TC
** * * * * * *
43394 GGGTAAGCCGAGGCATTTATACTGGCACACAAAATGCATCATC-AGGTAAACCGA-TACAT-T-T
1 -GGTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGA-GTAAACCGAGGA-ATCTAT
* * *** * **
43455 A-T--AACACAGAGTGCATCATC-GAGTAGGCCGAGGGC-TTTATACTAGCACACACAGTGCATC
63 ACTGGAACACACAATGCATCATCAG-GTAAATCGA-GGCATCTATACT-GGTCACACAGTGCATC
43515 ATC
125 ATC
* * * * * * * *
43518 GAGTAAACCGAGGCATTTATACTAGCACACATAGTGTATCATTTGA-TAAATCGAGGCATCTATA
1 G-GTAAATCGAGGCATCTATACTAGCACACACAGTGCATTA-TCGAGTAAACCGAGGAATCTATA
* * * * *
43582 CTAGCACACACAATGCATCATCAAGTAAATCGAGGAATCTATATTGGCTCACACAGTGCATCATC
64 CTGGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGG-TCACACAGTGCATCATC
* * * ** *
43647 GGGTAAA-CTGAGGCATCTATA-TTGACTCACACAGTACATTATCGAGTAATATTG-GGAATTTA
1 -GGTAAATC-GAGGCATCTATACTAG-CACACACAGTGCATTATCGAGTAA-ACCGAGGAATCTA
* * * *
43709 TATTGGAACACACAATGCATCATCAGGTAAATCGAGGCATTTATACTGGT-ACACAGTGTATCAA
62 TACTGGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGGTCACACAGTGCATCAT
43773 C
127 C
* *
43774 TGGTAAATCGAGGCATCTATACTAGCACATACAATGCATTATC-AGGTAAACCGAGGAATCTATA
1 -GGTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGA-GTAAACCGAGGAATCTATA
* * * * * * * *
43838 CTGGCACACATAATGCATTATCGGGTAAATCGAAGCGTCTATACT-TTCATACAGTGCATCATC
64 CTGGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGGTCACACAGTGCATCATC
** * * * *
43901 GAGTAAATCGAGAAATCTATACTGGCACACACAGTGTATCATCGAGTAAACCGAGGCATCTATAC
1 G-GTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGAGTAAACCGAGGAATCTATAC
* * * * * **
43966 TGGCAGACAGAGTGCATCATC-GAGTAAATCAAGAAATCTATACTGGGTCACACAGTGCAT
65 TGGAACACACAATGCATCATCAG-GTAAATCGAGGCATCTATACT-GGTCACACAGTGCAT
44026 TATTATATAA
Statistics
Matches: 786, Mismatches: 165, Indels: 112
0.74 0.16 0.11
Matches are distributed among these distances:
120 1 0.00
121 27 0.03
122 2 0.00
123 69 0.09
124 80 0.10
125 46 0.06
126 13 0.02
127 289 0.37
128 99 0.13
129 153 0.19
130 7 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (127 bp):
GGTAAATCGAGGCATCTATACTAGCACACACAGTGCATTATCGAGTAAACCGAGGAATCTATACT
GGAACACACAATGCATCATCAGGTAAATCGAGGCATCTATACTGGTCACACAGTGCATCATC
Found at i:44080 original size:170 final size:169
Alignment explanation
Indices: 42892--44115 Score: 626
Period size: 170 Copynumber: 7.2 Consensus size: 169
42882 TCGAGGCGGG
* * * * * * *
42892 TAAATCAAGGAATCAATATTGGCACACACAGTGCATTATCG-GATAAA-CTGAGGCATCTATAGT
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAG-TAAATC-GAGGCATCTATACT
* * * * * * * *
42955 GGCACACACAGTGTATCATCGGGTAAATCGAGGCATTTATACTGGCAT-ACATAATGCATCATCG
64 GGCACACACAGTGCATCATCGAGTAAA-CGAGGAATCTATACTGGC-TCACACAGTGCATTATCA
** * * * ** * *
43019 GGTAAATCGAGGCATTTATACTGGTACACAGTGCATCATCGGG
127 TATAAATTGAAGCATCTATACTGACACACAATGCATCATCGGA
* * * * **
43062 TAAATCGAGGAATCTATACT---A-ACACAGTGCATCATCGGGTAAATCAAAACATCTATACT--
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAGTAAATCGAGGCATCTATACTGG
* * * * * * * * * **
43121 CGCATACAGTACAACATAGAGTAAATCGAGGTATCTATACAGGCACACACAGTGCATCATTGGT-
66 CACACACAGTGCATCATCGAGTAAA-CGAGGAATCTATACTGGCTCACACAGTGCATTA-TCATA
**
43185 TAAATT-AAGGCATCTATACT-AGCACACTGTGCATCATC-GA
129 TAAATTGAA-GCATCTATACTGA-CACACAATGCATCATCGGA
* * * * * * * * * *
43225 GTAAACCGAAGCGTCTATACTTGCACAAACAGTGCATCATTG-GTTAAACCAAGGAATCTATACT
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAG-TAAATCGAGGCATCTATACT
* * * *
43289 GGCATACATAGTGCATCATCTG-GTAAATCGA-GACATCTATACTGGCACACA-AGTGCATCATC
64 GGCACACACAGTGCATCATC-GAGTAAA-CGAGGA-ATCTATACTGGCTCACACAGTGCATTATC
*** * * * * *
43351 GGGTAAATCGAGGCATCTATACTGTTACACAAAATGCATAATCGGG
126 ATATAAATTGAAGCATCTATACTG--ACACACAATGCATCATCGGA
** * * * * * **
43397 TAAGCCGAGGCATTTATACTGGCACACAAAATGCATCATC-AGGTAAACCGATACAT-T-TA-T-
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGA-GTAAATCGAGGCATCTATACTG
* * ** ** * * * *
43457 -AACACAGAGTGCATCATCGAGTAGGCCGAGGGCTTTATACTAGCACACACAGTGCATCATCGA-
65 GCACACACAGTGCATCATCGAGTA-AACGAGGAATCTATACTGGCTCACACAGTGCATTATC-AT
* ** * * * **
43520 GTAAACCGAGGCATTTATACT-AGCACACATAGTGTATCATTTGA
128 ATAAATTGAAGCATCTATACTGA-CACACA-A-TGCATCATCGGA
* * * * * *
43564 TAAATCGAGGCATCTATACTAGCACACACAATGCATCATCAAGTAAATCGAGGAATCTATATTGG
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAGTAAATCGAGGCATCTATACTGG
* * * * * *
43629 CTCACACAGTGCATCATCGGGTAAACTGAGGCATCTATATTGACTCACACAGTACATTATCGAGT
66 CACACACAGTGCATCATCGAGTAAAC-GAGGAATCTATACTGGCTCACACAGTGCATTATC-A-T
* * * * *
43694 A-ATATTG-GGAATTTATATTGGAACACACAATGCATCATCAGG-
128 ATAAATTGAAGCATCTATACT-G-ACACACAATGCATCATC-GGA
* * * *
43736 TAAATCGAGGCATTTATACTGG--TACACAGTGTATCAACTG-GTAAATCGAGGCATCTATACTA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATC-GAGTAAATCGAGGCATCTATACTG
* * * * * * **
43798 GCACATACAATGCATTATC-AGGTAAACCGAGGAATCTATACTGGCACACATAATGCATTATCGG
65 GCACACACAGTGCATCATCGA-GTAAA-CGAGGAATCTATACTGGCTCACACAGTGCATTATCAT
* * * ** * *
43862 GTAAATCGAAGCGTCTATACTTTCATACAGTGCATCATC-GA
128 ATAAATTGAAGCATCTATACTGACACACAATGCATCATCGGA
** *
43903 GTAAATCGAGAAATCTATACTGGCACACACAGTGTATCATCGAGTAAACCGAGGCATCTATACTG
1 -TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAGTAAATCGAGGCATCTATACTG
* * * * * *
43968 GCAGACAGAGTGCATCATCGAGTAAATCAAGAAATCTATACTGGGTCACACAGTGCATTATTATA
65 GCACACACAGTGCATCATCGAGTAAA-CGAGGAATCTATACTGGCTCACACAGTGCATTATCATA
44033 TAAATTGAAGCATCTATACTGACACACAATGCAT-ATTCGGA
129 TAAATTGAAGCATCTATACTGACACACAATGCATCA-TCGGA
* * * * * *
44074 TAAATCGAAGCATTTATACTGACACACAAAGTGAATCGTCGA
1 TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGA
44116 ATATACCGAA
Statistics
Matches: 801, Mismatches: 195, Indels: 116
0.72 0.18 0.10
Matches are distributed among these distances:
163 2 0.00
164 91 0.11
165 8 0.01
166 66 0.08
167 88 0.11
168 68 0.08
169 36 0.04
170 286 0.36
171 58 0.07
172 86 0.11
173 5 0.01
174 6 0.01
175 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (169 bp):
TAAATCGAGGCATCTATACTGGCACACACAGTGTATCATCGAGTAAATCGAGGCATCTATACTGG
CACACACAGTGCATCATCGAGTAAACGAGGAATCTATACTGGCTCACACAGTGCATTATCATATA
AATTGAAGCATCTATACTGACACACAATGCATCATCGGA
Found at i:45908 original size:19 final size:19
Alignment explanation
Indices: 45884--45921 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45874 AAAGTCTAAA
45884 TGTTCAAGGACCTTACCAG
1 TGTTCAAGGACCTTACCAG
45903 TGTTCAAGGACCTTACCAG
1 TGTTCAAGGACCTTACCAG
45922 AAATTTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
TGTTCAAGGACCTTACCAG
Found at i:46419 original size:43 final size:43
Alignment explanation
Indices: 46320--47495 Score: 998
Period size: 43 Copynumber: 27.6 Consensus size: 43
46310 AAGAAATGAG
*
46320 CTATACTAGCACACACAGTGCATCATC-GATTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* *
46363 CTATACTGG--CACACAGTGCATTATCAGATAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * *
46404 CTATACTAGCACACACAGTGCATCATCAGG-TAAACCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGATAAATCGAGGCAT
* * * * * *
46447 ATATATTGGCACACATAGTGCATCATCGGATAAACCAAAGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * * * *
46490 CTATATTGGCACAAATAGTACATCATC-GAT-AACCGAAGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * **
46531 CTATACTGGCACACACATTGCATCATCGAATAAACCGAAACAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* *
46574 CTATACT-G---ACACAGTGCATCATTGGATAAACCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* *** * * *
46613 CTTTACTAATACACATAGTGCGTCATCGGGTAAATC-AGGACAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGG-CAT
* * *
46656 CTATATTGGCACACACAGTGTATCATCAGG-TAAACCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGATAAATCGAGGCAT
* * *
46699 CTATACTGGCACACACAGTGCATCATC-AAGTAAACCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * *
46742 CTATATTGGCACACACAATGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * *
46785 CTATACTAGCACACACAGTGCATCATCGGGTAAATCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* *
46828 CTATACTGGCACACTCAGTGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * * **
46871 CTACACTGGCACACACAGTGTATCATCGAATAAATTGAATCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * * *
46914 TTATATTGGCACACACAGTGCATCATCGGGTAAA-CGATGCTT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * *
46956 TTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * *
46999 CTGTATTGGCACACACAGTGCATCATCGGATAAATCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * *
47042 CTATACTGACACACATAGTGCATCA-CCGAGTAAATCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * * * * * *
47085 TTATACTAGCACACATAGTGTATCATCGGGTAAACCGAGACAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * *
47128 CTATATTAG-AGCACACAGTG---CATC-GAGTAAATCGAGCCAT
1 CTATACTGGCA-CACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * * * * * *
47168 TTATAGTGGCAAACACAGTGCATCATCAAGA-AAATCAAAGAAT
1 CTATACTGGCACACACAGTGCATCATC-GGATAAATCGAGGCAT
* * * *
47211 CTATACTAGCACACAAAGTGCATCATCGGGTAAACCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
* * * ** *
47254 CGATATTGACACACATGGTGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
** * * * * *
47297 CTATACTATCACACAGAGTGCATCATC-AAGTAAACCAAGGCAA
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * * * *
47340 CTATACTGGCACATAGAGTGCACCATC-GACTAAACCGAGGTAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * * * * * *
47383 TTATACTGGCACACATAATGCATCATC-GAGTAAACCAAAGAAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* * *
47426 CTATACTGGTACACACAATGCATCATC-GAGTAAACCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGA-TAAATCGAGGCAT
* *
47469 CTATACTAGCACACACAGTACATCATC
1 CTATACTGGCACACACAGTGCATCATC
47496 CTATACTAGC
Statistics
Matches: 929, Mismatches: 174, Indels: 60
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.04
40 29 0.03
41 69 0.07
42 54 0.06
43 734 0.79
44 8 0.01
45 2 0.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (43 bp):
CTATACTGGCACACACAGTGCATCATCGGATAAATCGAGGCAT
Found at i:46774 original size:129 final size:129
Alignment explanation
Indices: 46320--48797 Score: 1827
Period size: 129 Copynumber: 19.5 Consensus size: 129
46310 AAGAAATGAG
* ** * *
46320 CTATACTAGCACACACAGTGCATCATCGATTAAATCGAGGCATCTATACTGG--CACACAGTGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * *
46383 TTATCAGATAAATCGAGGCATCTATACTAGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * * * * * * *
46447 ATATATTGGCACACATAGTGCATCATCGGATAAACCAAAGCATCTATATTGGCACAAATAGTACA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * *
46512 TCATC-GAT-AACCGAAGCATCTATACTGGCACACACATTGCATCATC-GAATAAACCGAA-ACA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAG-GTAAACC-AAGGCA
46573 T
129 T
* * * * *** * *
46574 CTATACT-G---ACACAGTGCATCATTGGATAAACCGAGGCATCTTTACTAATACACATAGTGCG
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * *
46635 TCATCGGGTAAATC-AGGACATCTATATTGGCACACACAGTGTATCATCAGGTAAACCGAGGCAT
66 TCATCGGGTAAATCGAGG-CATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
** * *
46699 CTATACTGGCACACACAGTGCATCATCAAGTAAACCAAGGCATCTATATTGGCACACACAATGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * *
46764 TCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCATCATCGGGTAAATCAAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * * *
46828 CTATACTGGCACACTCAGTGCATCATCGGGTAAATCGAGGCATCTACACTGGCACACACAGTGTA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
** * ** * * * * * *
46893 TCATCGAATAAATTGAATCATTTATATTGGCACACACAGTGCATCATCGGGTAAA-CGATGCTT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * *
46956 TTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTGTATTGGCACACACAGTGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * *
47021 TCATCGGATAAATCAAGGCATCTATACTGACACACATAGTGCATCA-CCGAGTAAATCAAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAG-GTAAACCAAGGCAT
* * * * * *
47085 TTATACTAGCACACATAGTGTATCATCGGGTAAACCGAGACATCTATATTAG-AGCACACAGTG-
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCA-CACACAGTGC
* * * * * * * * * *
47148 --CATCGAGTAAATCGAGCCATTTATAGTGGCAAACACAGTGCATCATCAAGAAAATCAAAGAAT
65 ATCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * * **
47211 CTATACTAGCACACAAAGTGCATCATCGGGTAAACCGAGGCATCGATATTGACACACATGGTGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
** * * *
47276 TCATCGGGTAAATCGAGGCATCTATACTATCACACAGAGTGCATCATCAAGTAAACCAAGGCAA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * ** * * * * *
47340 CTATACTGGCACATAGAGTGCACCATCGACTAAACCGAGGTATTTATACTGGCACACATAATGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * * * *
47405 TCATCGAGTAAACCAAAGAATCTATACTGGTACACACAATGCATCATC-GAGTAAACCGAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAG-GTAAACCAAGGCAT
* * * * * *
47469 CTATACTAGCACACACAGT--A-CA-----T----C-A-TC--CTATACTAGCACACATAGTACA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * * **
47518 TCATCAGGTAAATCGAGGCATCTATAATGGCACACAGAGTGTATCATCGGGTAAACCGAGATAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * *
47582 CTATATTGGCATACACAGTGCATCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* *** ** * * *
47647 TCATTGGGTAAATCGAGGCATCTATACCAACACACAGTGTGTATCA-CAAGGTAAATCGAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATC-AGGTAAACCAAGGCAT
* * ** * * *
47711 CTATACTAGCACACACAGTGTATCATCGGGTAAACTAAGGCATCTATACTGGTACACACAATGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* *
47776 TCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCATCATC-GAGTAAATCGAA-GCA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAG-GTAAA-CCAAGGCA
47839 T
129 T
* * * ** * * * * * * * *
47840 CTACACTGGCACACACAATGTATCATCGAATAAATCAAAGCATTTATACTAGCATACACAGTGTA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * * * * *
47905 TCATCGGATAAATCGAGACATTTATATTGGCACACATAATGCATTATC-GGATAAATC-GGGACA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGG-TAAACCAAGG-CA
47968 T
129 T
* * * * ** * * * * * *
47969 CTATACTGACACATAGAGTGCACCATCGACTAAACCGAGGTATTTATACTGACACACATAATGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * * ** *
48034 TCATCGAGTAAACCAAAGAATCTATACTGGCACACACAATGCATCATC-GAGTAAACTGAGGCAA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAG-GTAAACCAAGGCAT
* * * ** * * *
48098 CTATATTGGCACACACAATGCATCATCGAGTAAACTAAGGCATCTATACTAGCACATACAGT--A
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * *
48161 -CATC------AT-----C--CTATACTAGCACACATAGTACATCATCAGGTAAATCGAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * ** ** *
48211 CTATAATGGCACACAGAGTGTATCATCGGGTAAATTGAGATATCTATATTGGCATACACAGTGCA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * ** * *
48276 TCATCTGGTAAATCGAGGCATCTATACTGACACACACAAGTGCATCATTGGGTAAATCGAGGCAT
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACAC-AGTGCATCATCAGGTAAACCAAGGCAT
**** ** * * * * * * *
48341 CTATACCAAAACACAGTGTGTATCA-CTAGGTAAACCGAGACATCTATACTAGCACACACAATGT
1 CTATACTGGCACACACAGTGCATCATC-GGGTAAACCGAGGCATCTATATTGGCACACACAGTGC
* * * * *
48405 ATCATCGGGTAAACCAAGGCATCTATACTGGCACACACAATGCATCATCGGGTAAATCGAA-GCA
65 ATCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAA-CCAAGGCA
48469 T
129 T
* * * ** * * * * * * *
48470 CTACACTGGCACACACAATGTATCATCGAATAAATCGAAGCATTTATACTAGCATACACAGTGTA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * * *
48535 TCATCGGGTAAATCGAGACATCTATATTGGCACACATAATGCATTATC-GGATAAATC-GGGACA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGG-TAAACCAAGG-CA
48598 T
129 T
* * * * ** * * * * *
48599 CTATAATGACACATACAGTGCATCATTGACTAAACCGAGGCATTTATACTGGCATACACTGTACA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
* * * * * ** *
48664 TCATCGGGTAAATCGAGGTATCTATAATGGCACACAGAGTGTATCATCGGGTAAACGGAGGCAA
66 TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
* * * * * * * *
48728 CTATATTGGCACACACAATGCATCATCGAGTATATCGAGGCATCTATACTAGCACACACAGTACA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
48793 TCATC
66 TCATC
48798 CTGTACTAGC
Statistics
Matches: 1857, Mismatches: 419, Indels: 148
0.77 0.17 0.06
Matches are distributed among these distances:
113 166 0.09
114 2 0.00
115 2 0.00
116 7 0.00
117 1 0.00
120 1 0.00
121 2 0.00
122 2 0.00
123 46 0.02
124 5 0.00
125 47 0.03
126 110 0.06
127 98 0.05
128 118 0.06
129 1131 0.61
130 119 0.06
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (129 bp):
CTATACTGGCACACACAGTGCATCATCGGGTAAACCGAGGCATCTATATTGGCACACACAGTGCA
TCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCATCATCAGGTAAACCAAGGCAT
Found at i:47503 original size:27 final size:27
Alignment explanation
Indices: 47469--47522 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
47459 ACCGAGGCAT
47469 CTATACTAGCACACACAGTACATCATC
1 CTATACTAGCACACACAGTACATCATC
*
47496 CTATACTAGCACACATAGTACATCATC
1 CTATACTAGCACACACAGTACATCATC
47523 AGGTAAATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.31, G:0.07, T:0.24
Consensus pattern (27 bp):
CTATACTAGCACACACAGTACATCATC
Found at i:47564 original size:43 final size:42
Alignment explanation
Indices: 47496--48167 Score: 553
Period size: 43 Copynumber: 15.6 Consensus size: 42
47486 GTACATCATC
* * *
47496 CTATACTAGCACACATAGTACATCATCAGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGTAAATCGAGGCAT
* * * * **
47539 CTATAATGGCACACAGAGTGTATCATCGGGTAAACCGAGATAT
1 CTATACTGGCACACACAGTGCATCATC-GGTAAATCGAGGCAT
* *
47582 CTATATTGGCATACACAGTGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGTAAATCGAGGCAT
*
47625 CTATACTGGCACACACAGTGCATCATTGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCA-TCGGTAAATCGAGGCAT
*** ** *
47668 CTATACCAACACACAGTGTGTATCA-CAAGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATC--GGTAAATCGAGGCAT
* * *
47711 CTATACTAGCACACACAGTGTATCATCGGGTAAA-CTAAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGTAAATC-GAGGCAT
* *
47754 CTATACTGGTACACACAATGCATCATCGGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATC-GGTAAATCGAGGCAT
* *
47797 CTATACTAGCACACACAGTGCATCATCGAGTAAATCGAAGCAT
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATCGAGGCAT
* * * * * *
47840 CTACACTGGCACACACAATGTATCATCGAATAAATCAAAGCAT
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATCGAGGCAT
* * * * *
47883 TTATACTAGCATACACAGTGTATCATCGGATAAATCGAGACAT
1 CTATACTGGCACACACAGTGCATCATCGG-TAAATCGAGGCAT
* * * * *
47926 TTATATTGGCACACATAATGCATTATCGGATAAATCG-GGACAT
1 CTATACTGGCACACACAGTGCATCATCGG-TAAATCGAGG-CAT
* * * * * * *
47969 CTATACTGACACATAGAGTGCACCATCGACTAAACCGAGGTAT
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATCGAGGCAT
* * * * * * * *
48012 TTATACTGACACACATAATGCATCATCGAGTAAACCAAAGAAT
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATCGAGGCAT
* *
48055 CTATACTGGCACACACAATGCATCATCGAGTAAA-CTGAGGCAA
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATC-GAGGCAT
* * *
48098 CTATATTGGCACACACAATGCATCATCGAGTAAA-CTAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCG-GTAAATC-GAGGCAT
* * *
48141 CTATACTAGCACATACAGTACATCATC
1 CTATACTGGCACACACAGTGCATCATC
48168 CTATACTAGC
Statistics
Matches: 518, Mismatches: 99, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
42 4 0.01
43 509 0.98
44 5 0.01
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
CTATACTGGCACACACAGTGCATCATCGGTAAATCGAGGCAT
Found at i:47584 original size:113 final size:113
Alignment explanation
Indices: 47384--47608 Score: 263
Period size: 113 Copynumber: 2.0 Consensus size: 113
47374 CCGAGGTATT
* * * *
47384 TATACTGGCACACATAATGCATCATCGAGTAAACCAAAGAATCTATACTGGTACACACAATGCAT
1 TATACTAGCACACATAATACATCATCGAGTAAACCAAAGAATCTATAATGGCACACACAATGCAT
*
47449 CATCGAGTAAACCGAGGCATCTATACTAGCACACACAGTACATCATCC
66 CATCGAGTAAACCGAGACATCTATACTAGCACACACAGTACATCATCC
* * * * * * * *
47497 TATACTAGCACACATAGTACATCATC-AGGTAAATCGAGGCATCTATAATGGCACACAGAGTGTA
1 TATACTAGCACACATAATACATCATCGA-GTAAACCAAAGAATCTATAATGGCACACACAATGCA
* * * * * *
47561 TCATCGGGTAAACCGAGATATCTATATTGGCATACACAGTGCATCATC
65 TCATCGAGTAAACCGAGACATCTATACTAGCACACACAGTACATCATC
47609 GGGTAAATCG
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
112 1 0.01
113 91 0.99
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (113 bp):
TATACTAGCACACATAATACATCATCGAGTAAACCAAAGAATCTATAATGGCACACACAATGCAT
CATCGAGTAAACCGAGACATCTATACTAGCACACACAGTACATCATCC
Found at i:47650 original size:86 final size:86
Alignment explanation
Indices: 47496--48167 Score: 623
Period size: 86 Copynumber: 7.8 Consensus size: 86
47486 GTACATCATC
* * * * * * * * *
47496 CTATACTAGCACACATAGTACATCATCAGGTAAATCGAGGCATCTATAATGGCACACAGAGTGTA
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
**
47561 TCATCGGGTAAACCGAGATAT
66 TCATCGGGTAAACCGAGGCAT
* * * *
47582 CTATATTGGCATACACAGTGCATCATCGGGTAAATCGAGGCATCTATACTGGCACACACAGTGCA
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
* *
47647 TCATTGGGTAAATCGAGGCAT
66 TCATCGGGTAAACCGAGGCAT
*** *** * * *
47668 CTATACCAACACACAGTGTGTATCA-CAAGGTAAATCGAGGCATCTATACTAGCACACACAGTGT
1 CTATACTGGCACACACAATGCATCATC-GGGTAAATCGAGGCATCTATACTAGCACACACAGTGC
**
47732 ATCATCGGGTAAACTAAGGCAT
65 ATCATCGGGTAAACCGAGGCAT
*
47754 CTATACTGGTACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
* * *
47819 TCATCGAGTAAATCGAAGCAT
66 TCATCGGGTAAACCGAGGCAT
* * ** * * * * *
47840 CTACACTGGCACACACAATGTATCATCGAATAAATCAAAGCATTTATACTAGCATACACAGTGTA
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
* * *
47905 TCATCGGATAAATCGAGACAT
66 TCATCGGGTAAACCGAGGCAT
* * * * * * *
47926 TTATATTGGCACACATAATGCATTATCGGATAAATCG-GGACATCTATACT-GACACATAGAGTG
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGG-CATCTATACTAG-CACACACAGTG
* ** *
47989 CACCATCGACTAAACCGAGGTAT
64 CATCATCGGGTAAACCGAGGCAT
* * * * * * * * * *
48012 TTATACTGACACACATAATGCATCATCGAGTAAACCAAAGAATCTATACTGGCACACACAATGCA
1 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
* * *
48077 TCATCGAGTAAACTGAGGCAA
66 TCATCGGGTAAACCGAGGCAT
* * * * *
48098 CTATATTGGCACACACAATGCATCATCGAGTAAA-CTAAGGCATCTATACTAGCACATACAGTAC
1 CTATACTGGCACACACAATGCATCATCGGGTAAATC-GAGGCATCTATACTAGCACACACAGTGC
48162 ATCATC
65 ATCATC
48168 CTATACTAGC
Statistics
Matches: 475, Mismatches: 104, Indels: 14
0.80 0.18 0.02
Matches are distributed among these distances:
85 4 0.01
86 468 0.99
87 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (86 bp):
CTATACTGGCACACACAATGCATCATCGGGTAAATCGAGGCATCTATACTAGCACACACAGTGCA
TCATCGGGTAAACCGAGGCAT
Found at i:47709 original size:242 final size:241
Alignment explanation
Indices: 47263--47729 Score: 551
Period size: 242 Copynumber: 1.9 Consensus size: 241
47253 TCGATATTGA
* * * * *
47263 CACACATGGTGCATCATCGGGTAAATCGAGGCATCTATACTATCACACAGAGTGCATCATCAAGT
1 CACACATAGTACATCATCAGGTAAATCGAGGCATCTATAATAGCACACAGAGTGCATCATCAAGT
* * * * *
47328 AAACCAAGGCAACTATACTGGCACATAGAGTGCACCATCGACTAAACCGAGGTATTTATACTGGC
66 AAACCAAGACAACTATACTGGCACACACAGTGCACCATCGACTAAACCGAGGCATCTATACTGGC
* ** *
47393 ACACATAATGCATCATCGAGTAAACCAAAGAATCTATACTGGTACACACAATGCATCATCGAGTA
131 ACACACAATGCATCATCGAGTAAACCAAAGAATCTATAC-GCAACACACAATGCATCATCAAGTA
47458 AACCGAGGCATCTATACTAGCACACACAGTACATCATCCTATACTAG
195 AACCGAGGCATCTATACTAGCACACACAGTACATCATCCTATACTAG
* * **
47505 CACACATAGTACATCATCAGGTAAATCGAGGCATCTATAATGGCACACAGAGTGTATCATCGGGT
1 CACACATAGTACATCATCAGGTAAATCGAGGCATCTATAATAGCACACAGAGTGCATCATCAAGT
* * * * * * ** *
47570 AAACCGAGATATCTATATTGGCATACACAGTGCATCATCGGGTAAATCGAGGCATCTATACTGGC
66 AAACCAAGACAACTATACTGGCACACACAGTGCACCATCGACTAAACCGAGGCATCTATACTGGC
* * * * * * * * *
47635 ACACACAGTGCATCATTGGGTAAATCGAGGCATCTATAC-CAACACACAGTGTGTATCA-CAAGG
131 ACACACAATGCATCATCGAGTAAACCAAAGAATCTATACGCAACACACA--ATGCATCATCAA-G
*
47698 TAAATCGAGGCATCTATACTAGCACACACAGT
193 TAAACCGAGGCATCTATACTAGCACACACAGT
47730 GTATCATCGG
Statistics
Matches: 185, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
240 7 0.04
241 2 0.01
242 176 0.95
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (241 bp):
CACACATAGTACATCATCAGGTAAATCGAGGCATCTATAATAGCACACAGAGTGCATCATCAAGT
AAACCAAGACAACTATACTGGCACACACAGTGCACCATCGACTAAACCGAGGCATCTATACTGGC
ACACACAATGCATCATCGAGTAAACCAAAGAATCTATACGCAACACACAATGCATCATCAAGTAA
ACCGAGGCATCTATACTAGCACACACAGTACATCATCCTATACTAG
Found at i:48175 original size:27 final size:27
Alignment explanation
Indices: 48141--48194 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
48131 ACTAAGGCAT
*
48141 CTATACTAGCACATACAGTACATCATC
1 CTATACTAGCACACACAGTACATCATC
*
48168 CTATACTAGCACACATAGTACATCATC
1 CTATACTAGCACACACAGTACATCATC
48195 AGGTAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (27 bp):
CTATACTAGCACACACAGTACATCATC
Found at i:48236 original size:43 final size:43
Alignment explanation
Indices: 48168--48797 Score: 573
Period size: 43 Copynumber: 14.6 Consensus size: 43
48158 GTACATCATC
* * * *
48168 CTATACTAGCACACATAGTACATCATCAGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * * **
48211 CTATAATGGCACACAGAGTGTATCATCGGGTAAATTGAGATAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * *
48254 CTATATTGGCATACACAGTGCATCATCTGGTAAATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* *
48297 CTATACTGACACACACAAGTGCATCATTGGGTAAATCGAGGCAT
1 CTATACTGGCACACAC-AGTGCATCATCGGGTAAATCGAGGCAT
**** ** * * * *
48341 CTATACCAAAACACAGTGTGTATCA-CTAGGTAAACCGAGACAT
1 CTATACTGGCACACACAGTGCATCATC-GGGTAAATCGAGGCAT
* * * * *
48384 CTATACTAGCACACACAATGTATCATCGGGTAAACCAAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* *
48427 CTATACTGGCACACACAATGCATCATCGGGTAAATCGAAGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * ** *
48470 CTACACTGGCACACACAATGTATCATCGAATAAATCGAAGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * * *
48513 TTATACTAGCATACACAGTGTATCATCGGGTAAATCGAGACAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * * *
48556 CTATATTGGCACACATAATGCATTATCGGATAAATCG-GGACAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGG-CAT
* * * * ** *
48599 CTATAATGACACATACAGTGCATCATTGACTAAACCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * * *
48642 TTATACTGGCATACACTGTACATCATCGGGTAAATCGAGGTAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* * * *
48685 CTATAATGGCACACAGAGTGTATCATCGGGTAAA-CGGAGGCAA
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATC-GAGGCAT
* * * *
48728 CTATATTGGCACACACAATGCATCATCGAGTATATCGAGGCAT
1 CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
* *
48771 CTATACTAGCACACACAGTACATCATC
1 CTATACTGGCACACACAGTGCATCATC
48798 CTGTACTAGC
Statistics
Matches: 469, Mismatches: 111, Indels: 14
0.79 0.19 0.02
Matches are distributed among these distances:
42 2 0.00
43 426 0.91
44 41 0.09
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (43 bp):
CTATACTGGCACACACAGTGCATCATCGGGTAAATCGAGGCAT
Found at i:48256 original size:113 final size:113
Alignment explanation
Indices: 48055--48258 Score: 250
Period size: 113 Copynumber: 1.8 Consensus size: 113
48045 ACCAAAGAAT
* * *
48055 CTATACTGGCACACACAATGCATCATCGAGTAAACTGAGGCAACTATATTGGCACACACAATGCA
1 CTATACTAGCACACACAATACATCATCGAGTAAACTGAGGCAACTATAATGGCACACACAATGCA
*
48120 TCATCGAGTAAACTAAGGCATCTATACTAGCACATACAGTACATCATC
66 TCATCGAGTAAACTAAGACATCTATACTAGCACATACAGTACATCATC
* * * * *
48168 CTATACTAGCACACATAGTACATCATC-AGGTAAA-TCGAGGCATCTATAATGGCACACAGAGTG
1 CTATACTAGCACACACAATACATCATCGA-GTAAACT-GAGGCAACTATAATGGCACACACAATG
* * * * *
48231 TATCATCGGGTAAATTGAGATATCTATA
64 CATCATCGAGTAAACTAAGACATCTATA
48259 TTGGCATACA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
112 2 0.03
113 73 0.97
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (113 bp):
CTATACTAGCACACACAATACATCATCGAGTAAACTGAGGCAACTATAATGGCACACACAATGCA
TCATCGAGTAAACTAAGACATCTATACTAGCACATACAGTACATCATC
Found at i:52076 original size:12 final size:12
Alignment explanation
Indices: 52059--52083 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
52049 AGTAATAATA
52059 ATGTGACAATTT
1 ATGTGACAATTT
52071 ATGTGACAATTT
1 ATGTGACAATTT
52083 A
1 A
52084 CATGCACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATGTGACAATTT
Found at i:52170 original size:17 final size:18
Alignment explanation
Indices: 52132--52171 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
52122 TACCATATCT
* *
52132 AAAAATAATTTAAAATAT
1 AAAAATAATTTAAAAAAC
52150 AAAAAT-ATTTAAAAAAC
1 AAAAATAATTTAAAAAAC
52167 AAAAA
1 AAAAA
52172 CAAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAAATAATTTAAAAAAC
Found at i:52171 original size:18 final size:18
Alignment explanation
Indices: 52132--52192 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
52122 TACCATATCT
* *
52132 AAAAATAATTTAAAATAT
1 AAAAATAATTTAAAAAAA
52150 AAAAAT-ATTTAAAAAACA
1 AAAAATAATTTAAAAAA-A
* *
52168 AAAACAAAAATTAAAAAAA
1 AAAA-ATAATTTAAAAAAA
*
52187 TAAAAT
1 AAAAAT
52193 GAAGTGCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 9 0.26
18 11 0.32
19 5 0.15
20 9 0.26
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATAATTTAAAAAAA
Found at i:52186 original size:21 final size:22
Alignment explanation
Indices: 52151--52191 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
52141 TTAAAATATA
*
52151 AAAATATTTAAAAAACAAAAAC
1 AAAATATTAAAAAAACAAAAAC
*
52173 AAAA-ATTAAAAAAATAAAA
1 AAAATATTAAAAAAACAAAA
52192 TGAAGTGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAATATTAAAAAAACAAAAAC
Found at i:52836 original size:43 final size:43
Alignment explanation
Indices: 52653--52852 Score: 247
Period size: 43 Copynumber: 4.7 Consensus size: 43
52643 TGACATACAT
* * * * * *
52653 AGTGCATCATCAAATAAACTGAAACATTTATATTGGCATACAC
1 AGTGCATCATCGAATAAACCGAAGCATCTATACTGGCACACAC
* * * *
52696 AGTGCATCATCAAATACACCGAAACATCTATATTGGCACACAC
1 AGTGCATCATCGAATAAACCGAAGCATCTATACTGGCACACAC
* * *
52739 AGTGCATCATCGGATAAACCGAAGCGTCTAAACTGGCACACAC
1 AGTGCATCATCGAATAAACCGAAGCATCTATACTGGCACACAC
* *
52782 AGTGCATCATCGAATAAATCGAAGCATTTATACTGGCACACAC
1 AGTGCATCATCGAATAAACCGAAGCATCTATACTGGCACACAC
* *
52825 AGTGCATCATCGGATAAATCGAAGCATC
1 AGTGCATCATCGAATAAACCGAAGCATC
52853 ATCATCGGAT
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (43 bp):
AGTGCATCATCGAATAAACCGAAGCATCTATACTGGCACACAC
Found at i:52859 original size:23 final size:23
Alignment explanation
Indices: 52829--52875 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
52819 ACACACAGTG
*
52829 CATCATCGGATAAATCGAAGCAT
1 CATCATCGGATAAATAGAAGCAT
52852 CATCATCGGATAAATAGAAGCAT
1 CATCATCGGATAAATAGAAGCAT
52875 C
1 C
52876 TATACTGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (23 bp):
CATCATCGGATAAATAGAAGCAT
Found at i:52888 original size:66 final size:66
Alignment explanation
Indices: 52786--52918 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
52776 ACACACAGTG
* *
52786 CATCATCGAATAAATCGAAGCATTTATACTGGCACACACAGTGCATCATCGGATAAATCGAAGCA
1 CATCATCGAATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATCGAAGCA
52851 T
66 T
* *
52852 CATCATCGGATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATTGAAGCA
1 CATCATCGAATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATCGAAGCA
52917 T
66 T
52918 C
1 C
52919 TATACTGACA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (66 bp):
CATCATCGAATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATCGAAGCA
T
Found at i:52899 original size:43 final size:43
Alignment explanation
Indices: 52852--53017 Score: 228
Period size: 43 Copynumber: 3.9 Consensus size: 43
52842 ATCGAAGCAT
* *
52852 CATCATCGGATAAATAGAAGCATCTATACTGGCACACACAGTG
1 CATCATCGGATAAATCGAAGCATCTATACTGGCACACACAATG
* * *
52895 CATCATCGGATAAATTGAAGCATCTATACTGACACACAAAATG
1 CATCATCGGATAAATCGAAGCATCTATACTGGCACACACAATG
* *
52938 CATTATCGGGTAAATCGAAGCATCTATACTGG-A-ACACAATG
1 CATCATCGGATAAATCGAAGCATCTATACTGGCACACACAATG
* * *
52979 CATCATCGGGTAAACCGGAGCATCTATACTGGCACACAC
1 CATCATCGGATAAATCGAAGCATCTATACTGGCACACAC
53018 TGTAACATTC
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
41 36 0.33
42 2 0.02
43 71 0.65
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (43 bp):
CATCATCGGATAAATCGAAGCATCTATACTGGCACACACAATG
Found at i:52940 original size:109 final size:109
Alignment explanation
Indices: 52743--52961 Score: 330
Period size: 109 Copynumber: 2.0 Consensus size: 109
52733 ACACACAGTG
* *
52743 CATCATCGGATAAACCGAAGCGTCTAAACTGGCACACACAGTGCATCATCGAATAAATCGAAGCA
1 CATCATCGGATAAACAGAAGCATCTAAACTGGCACACACAGTGCATCATCGAATAAATCGAAGCA
* * * *
52808 TTTATACTGGCACACACAGTGCATCATCGGATAAATCGAAGCAT
66 TCTATACTGACACACAAAATGCATCATCGGATAAATCGAAGCAT
* * * *
52852 CATCATCGGATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATTGAAGCA
1 CATCATCGGATAAACAGAAGCATCTAAACTGGCACACACAGTGCATCATCGAATAAATCGAAGCA
* *
52917 TCTATACTGACACACAAAATGCATTATCGGGTAAATCGAAGCAT
66 TCTATACTGACACACAAAATGCATCATCGGATAAATCGAAGCAT
52961 C
1 C
52962 TATACTGGAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 98 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.21
Consensus pattern (109 bp):
CATCATCGGATAAACAGAAGCATCTAAACTGGCACACACAGTGCATCATCGAATAAATCGAAGCA
TCTATACTGACACACAAAATGCATCATCGGATAAATCGAAGCAT
Found at i:53015 original size:84 final size:86
Alignment explanation
Indices: 52856--53016 Score: 236
Period size: 84 Copynumber: 1.9 Consensus size: 86
52846 AAGCATCATC
* **
52856 ATCGGATAAATAGAAGCATCTATACTGGCACACACAGTGCATCATCGGATAAATTGAAGCATCTA
1 ATCGGATAAATAGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAACCGAAGCATCTA
52921 TACTGACACACAAAATGCATT
66 TACTGACACACAAAATGCATT
* * * *
52942 ATCGGGTAAATCGAAGCATCTATACTGG-A-ACACAATGCATCATCGGGTAAACCGGAGCATCTA
1 ATCGGATAAATAGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAACCGAAGCATCTA
*
53005 TACTGGCACACA
66 TACTGACACACA
53017 CTGTAACATT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
84 40 0.60
85 1 0.01
86 26 0.39
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (86 bp):
ATCGGATAAATAGAAGCATCTATACTGGCACACACAATGCATCATCGGATAAACCGAAGCATCTA
TACTGACACACAAAATGCATT
Done.