Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001500.1 Kokia drynarioides strain JFW-HI SEQ_113039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34


Found at i:88 original size:16 final size:16

Alignment explanation


    Indices: 64--94  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

         54 TCAAAGATAA

                *           
         64 TTATGTTTAGAACAAC
          1 TTATATTTAGAACAAC

                           
         80 TTATATTTAGAACAA
          1 TTATATTTAGAACAA

         95 TTGTGTTATT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39


Consensus pattern (16 bp):   
TTATATTTAGAACAAC
Done.