Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015003.1 Kokia drynarioides strain JFW-HI SEQ_130047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198370

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3019--3053
15
2.2
16
90
5
54
31
2
2
62
1.24
3631--4117
161
3.0
163
96
1
888
45
8
10
35
1.68
15576--15613
4
9.5
4
100
0
76
26
23
0
50
1.50
32152--32178
13
2.1
13
100
0
54
14
0
0
85
0.61
32799--32846
18
2.7
18
83
0
60
25
29
18
27
1.98
37834--37898
27
2.4
25
83
14
85
33
7
0
58
1.27
39399--39429
2
16.0
2
93
6
55
48
0
0
51
1.00
41212--41245
18
1.9
17
94
5
59
58
0
38
2
1.13
42462--42498
6
6.3
6
96
3
67
51
0
48
0
1.00
43812--43849
2
19.0
2
88
0
58
50
0
0
50
1.00
43931--43987
26
2.2
26
87
0
87
52
5
15
26
1.64
45965--46001
16
2.2
17
90
9
58
43
0
0
56
0.99
50028--50054
6
4.5
6
100
0
54
70
0
0
29
0.88
50303--50332
13
2.4
13
94
5
53
43
0
6
50
1.28
50422--50481
28
2.1
28
82
11
70
36
0
1
61
1.06
50421--50480
27
2.2
27
80
13
70
35
0
1
63
1.05
53327--53361
3
11.7
3
100
0
70
31
0
0
68
0.90
54005--54055
26
1.9
27
84
11
70
27
5
3
62
1.36
60666--60706
16
2.4
17
84
12
57
36
2
0
60
1.10
61815--61956
63
2.3
61
82
4
176
46
15
1
36
1.55
71637--71673
15
2.5
15
90
0
56
0
10
0
89
0.49
71635--71673
17
2.3
17
90
0
60
0
10
0
89
0.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71636--71673
8
4.6
8
93
3
58
0
10
0
89
0.49
86353--86384
3
10.7
3
100
0
64
34
0
0
65
0.93
90372--90405
15
2.2
16
90
10
54
44
0
0
55
0.99
90797--90857
3
20.3
3
96
0
113
65
0
1
32
1.02
100603--100627
2
12.5
2
100
0
50
52
0
0
48
1.00
104475--104524
16
3.1
17
83
11
61
54
18
6
22
1.65
105036--105093
15
3.8
15
78
14
57
56
0
3
39
1.16
105389--105421
17
1.9
17
88
11
50
54
0
0
45
0.99
111281--111367
36
2.5
34
83
3
102
29
28
11
29
1.92
116916--116949
5
6.6
5
96
3
59
79
17
2
0
0.86
116916--116958
15
2.9
16
86
13
65
81
13
4
0
0.84
116976--117132
81
1.9
81
84
5
210
28
13
26
31
1.94
117789--117838
20
2.5
19
81
9
55
52
2
0
46
1.12
117790--117847
27
2.1
27
83
0
71
50
3
3
43
1.36
118619--118718
49
2.0
49
88
0
146
38
12
7
43
1.69
120730--120886
81
1.9
82
82
10
198
49
1
4
43
1.33
126524--126577
6
9.0
6
89
0
63
16
44
0
38
1.48
126524--126576
12
4.4
12
90
0
79
16
43
0
39
1.49
126524--126577
18
3.0
18
86
0
72
16
44
0
38
1.48
139819--139876
20
3.0
20
85
7
75
56
6
1
34
1.36
139821--139882
18
3.2
19
82
11
65
59
4
1
33
1.28
139820--139883
19
3.3
19
82
8
76
60
4
1
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156167--156210
21
2.1
21
95
0
79
84
6
0
9
0.79
156160--156214
27
2.0
28
85
3
76
80
7
1
10
0.99
156680--156729
24
2.0
25
88
3
75
50
4
2
44
1.32
162799--162829
2
15.5
2
100
0
62
51
0
48
0
1.00
163853--163902
20
2.5
20
93
0
82
34
4
16
46
1.65
167550--167676
23
5.5
22
76
10
96
11
22
22
43
1.85
172407--172440
12
2.8
12
90
0
50
58
0
23
17
1.38
172412--172456
6
7.5
6
84
0
54
48
0
28
22
1.50
172408--172456
18
2.7
18
83
0
62
51
0
26
22
1.49
172584--172662
37
2.1
38
83
2
97
22
20
25
31
1.98
176527--176568
22
1.9
22
85
0
57
16
4
23
54
1.61
177878--177927
25
2.1
24
89
10
77
46
0
0
54
1.00
177934--177989
17
3.2
18
72
7
53
32
0
3
64
1.11
185278--185313
6
6.0
6
100
0
72
33
0
33
33
1.58
188294--188318
3
8.3
3
100
0
50
68
0
32
0
0.90
193054--193111
21
2.8
21
87
7
82
44
8
5
41
1.57
193062--193111
22
2.4
21
86
6
75
46
8
4
42
1.52

Tables:   1

The End!