Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015006.1 Kokia drynarioides strain JFW-HI SEQ_130050, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4222
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:1678 original size:18 final size:18

Alignment explanation


    Indices: 1626--1678  Score: 54
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       1616 CCGAGTTCGG

                            * 
       1626 CTTCGGCTCCAGCTCCTT
          1 CTTCGGCTCCAGCTCCGT

              * *     *        
       1644 CTCCTGCTCTGAG-TCCGT
          1 CTTCGGCTC-CAGCTCCGT

                             
       1662 CTTCGGCTCCAGCTCCG
          1 CTTCGGCTCCAGCTCCG

       1679 GCTCTGCCAT


Statistics
Matches: 26,  Mismatches: 7, Indels: 4
        0.70            0.19        0.11

Matches are distributed among these distances:
  17    2  0.08
  18   22  0.85
  19    2  0.08

ACGTcount: A:0.06, C:0.43, G:0.21, T:0.30


Consensus pattern (18 bp):   
CTTCGGCTCCAGCTCCGT
Done.