genome.fa.s15008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015008.1 Kokia drynarioides strain JFW-HI SEQ_130052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119612

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194--236	21	2.1	21	86	4	61	58	13	2	25	1.48
2282--2325	22	1.9	24	86	9	65	36	4	2	56	1.32
2924--2965	19	2.2	19	87	8	59	52	2	11	33	1.51
10382--10418	3	12.7	3	88	5	58	64	0	2	32	1.07
15768--15815	18	2.7	18	86	0	69	20	29	0	50	1.49
15781--15812	6	5.3	6	100	0	64	18	34	0	46	1.49
16964--17116	76	2.2	66	79	20	216	26	22	8	36	1.82
19351--19413	24	2.6	24	87	0	81	25	12	11	50	1.73
21511--21578	31	2.2	32	81	2	75	35	8	16	39	1.79
22440--22473	14	2.5	13	86	9	50	64	0	0	35	0.94
22440--22468	14	2.1	14	93	6	51	68	0	0	31	0.89
23297--23419	31	4.1	31	69	17	98	27	14	11	46	1.79
23227--23419	90	2.1	89	82	7	221	27	14	10	46	1.78
23313--23427	59	1.9	60	84	8	155	25	13	12	49	1.76
23596--23700	33	3.4	31	76	17	94	44	12	16	26	1.83
23586--23679	28	3.2	28	73	19	91	50	10	15	23	1.76
23569--23700	59	2.1	62	83	6	162	46	12	15	25	1.81
33416--33480	33	1.9	34	84	9	89	40	3	4	52	1.38
34706--34739	7	4.9	7	100	0	68	58	41	0	0	0.98
48891--49007	60	2.0	60	91	0	189	27	35	6	30	1.83
54049--54087	9	4.1	9	87	12	60	51	0	0	48	1.00
54049--54089	20	2.0	20	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60259--60367	23	4.7	23	84	8	114	43	20	22	13	1.87
68052--68108	27	2.1	27	83	6	71	61	14	1	22	1.42
69770--69799	3	10.0	3	100	0	60	0	0	66	33	0.92
69851--69890	6	6.7	6	100	0	80	0	30	0	70	0.88
70641--70709	35	2.0	35	100	0	138	31	2	14	50	1.57
72683--72732	26	1.9	26	100	0	100	28	4	18	50	1.65
78408--78476	20	3.7	19	77	11	63	55	1	0	43	1.08
79097--79150	19	2.8	19	82	2	63	66	3	0	29	1.09
79370--79449	29	2.6	28	84	9	79	32	5	15	47	1.66
79391--79449	29	2.0	30	90	3	93	30	5	15	49	1.66
79396--79458	29	2.1	29	85	8	83	33	7	12	46	1.71
79591--79662	31	2.4	30	81	4	81	45	9	8	36	1.67
80360--80405	22	2.2	22	85	14	62	19	10	13	56	1.66
83019--83066	26	1.9	24	87	8	69	33	0	0	66	0.92
83370--83425	20	2.8	20	74	15	62	17	1	7	73	1.15
83370--83427	22	2.9	21	72	12	59	18	1	6	72	1.16
83416--83440	13	1.9	13	100	0	50	24	0	4	72	1.02
83372--83448	40	1.9	41	82	12	97	20	1	7	70	1.20
91162--91228	30	2.2	30	82	10	75	34	0	4	61	1.16
94615--94654	20	2.0	20	85	0	53	35	10	2	52	1.48
105857--105893	18	2.1	18	89	0	56	24	27	0	48	1.51
108276--108312	3	12.3	3	100	0	74	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110425--110476	19	2.7	20	82	11	63	38	0	3	57	1.17
110425--110482	19	3.0	18	75	12	53	39	0	5	55	1.22
110431--110495	27	2.4	28	81	2	78	38	0	3	58	1.14

Tables:   1

The End!