genome.fa.s15010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015010.1 Kokia drynarioides strain JFW-HI SEQ_130054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114800

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7086--7114	2	14.5	2	100	0	58	48	0	0	51	1.00
13954--14077	62	2.0	62	100	0	248	35	20	27	16	1.94
20420--20454	15	2.3	15	85	0	52	25	0	0	74	0.82
24030--24075	24	1.9	24	86	0	65	36	4	6	52	1.47
31733--31781	18	2.8	18	76	14	57	48	4	0	46	1.20
40884--41013	30	4.3	29	76	9	102	29	22	5	43	1.75
45133--45187	10	5.3	10	87	10	58	87	0	7	5	0.68
45133--45199	11	6.5	10	83	15	66	85	0	10	4	0.74
45130--45200	17	4.5	15	77	10	63	84	0	11	4	0.75
45130--45200	19	3.9	18	82	15	76	84	0	11	4	0.75
45133--45194	20	3.2	19	84	11	72	85	0	9	4	0.73
45163--45200	8	4.6	8	81	18	51	86	0	13	0	0.56
46109--46203	49	1.9	49	85	8	131	34	18	34	11	1.87
46399--47404	43	23.1	43	78	7	759	34	21	16	28	1.94
46399--47400	90	11.5	85	78	8	766	34	21	16	28	1.94
46401--47388	133	7.6	132	77	10	712	34	21	15	28	1.94
47575--47742	85	2.0	85	81	0	201	41	17	20	21	1.91
49884--50023	30	4.7	29	78	11	92	36	23	3	36	1.72
49914--50110	30	6.6	31	77	6	133	35	26	3	34	1.74
49941--50170	30	7.7	30	75	6	182	34	26	4	34	1.76
49909--50139	60	3.9	59	77	6	209	35	26	3	34	1.74
49950--50170	119	1.9	120	82	6	288	35	26	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52695--52732	19	2.0	19	100	0	76	26	5	26	42	1.76
54991--55025	18	1.9	18	88	0	52	2	2	45	48	1.32
56234--56270	18	2.1	18	94	0	65	35	0	0	64	0.94
56563--56626	31	2.0	31	81	6	74	53	4	12	29	1.59
56755--56779	4	6.2	4	100	0	50	24	0	0	76	0.80
58019--58210	61	3.2	59	80	5	206	46	13	17	22	1.82
68256--68331	12	6.7	11	77	14	66	21	23	0	55	1.44
68275--68329	23	2.4	22	80	14	67	20	27	0	52	1.46
68256--68336	5	14.4	5	72	20	54	22	23	0	54	1.45
69107--69163	22	2.7	21	80	2	60	57	1	0	40	1.09
69118--69170	28	1.9	28	85	11	74	60	0	0	39	0.97
81082--81109	14	2.0	14	100	0	56	14	0	28	57	1.38
81127--81214	44	2.0	44	97	0	167	43	26	6	23	1.79
88465--88534	31	2.3	31	82	4	90	42	14	2	40	1.60
88805--88847	18	2.4	18	80	7	52	51	0	2	46	1.13
89670--89746	29	2.6	28	78	10	82	57	5	5	32	1.43
90325--90402	6	13.5	6	72	12	65	41	1	1	56	1.15
90310--90402	17	5.4	17	84	2	114	39	1	2	56	1.18
90345--90400	11	4.8	12	82	4	62	35	1	1	60	1.17
92866--92916	21	2.4	21	80	0	57	41	27	13	17	1.87
103871--103998	63	2.0	63	98	0	247	32	36	7	24	1.82
104374--104398	9	2.8	9	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104907--104962	20	2.8	19	81	10	60	39	0	1	58	1.08
104920--104986	31	2.2	31	94	0	116	38	1	1	58	1.17
105385--105443	29	2.0	30	86	3	84	52	3	1	42	1.28
108428--108477	18	2.7	19	78	9	59	36	22	20	22	1.96
108445--108486	18	2.3	18	80	11	50	42	21	16	19	1.89
108428--108496	36	1.9	36	82	5	86	36	20	18	24	1.95
109296--109361	30	2.2	30	86	8	89	46	24	0	28	1.52
109777--109806	15	2.1	15	93	6	53	73	0	26	0	0.84
112532--112584	20	2.6	22	80	14	60	33	0	1	64	1.05

Tables:   1

The End!