Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015012.1 Kokia drynarioides strain JFW-HI SEQ_130056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 316062
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Warning! 41 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:1389 original size:43 final size:43
Alignment explanation
Indices: 1328--1441 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
1318 CGATGTACCA
* *
1328 GCACATCCAAGGCACCAAGGTACCGATGGTGTGT-ATTGCTCCC
1 GCACATCCAAGGCACCAAGGTGCCGATGGTGTGTGA-GGCTCCC
* * * *
1371 GCACATCCAAGGTACCAAGATGTCGATGGTGTTTGAGGCTCCC
1 GCACATCCAAGGCACCAAGGTGCCGATGGTGTGTGAGGCTCCC
*
1414 GCTCATCCAAGGCACCAAGGTGCCGATG
1 GCACATCCAAGGCACCAAGGTGCCGATG
1442 CTTCCGTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (43 bp):
GCACATCCAAGGCACCAAGGTGCCGATGGTGTGTGAGGCTCCC
Found at i:2213 original size:43 final size:43
Alignment explanation
Indices: 2140--2282 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 43
2130 CGATGGCATT
* * * *
2140 CGATTCTCCGGCACATCCAAGGCACCAAGGTGTTGATGCTACC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGTAGATGGTACC
* * **
2183 CGATGCTCCCAG-ACATCTAAGGCACCAAGGTGCAGATGGTGTC
1 CGATGCTCCC-GCACATCCAAGGCACCAAGGTGTAGATGGTACC
* *
2226 CGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGGTTCC
1 CGATGCTCCCGCACATCCAAGGCACCAAGGTGTAGATGGTACC
*
2269 CGATGGTCCCGCAC
1 CGATGCTCCCGCAC
2283 CATTACCAAC
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 82 0.98
44 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (43 bp):
CGATGCTCCCGCACATCCAAGGCACCAAGGTGTAGATGGTACC
Found at i:2385 original size:86 final size:85
Alignment explanation
Indices: 2222--2497 Score: 243
Period size: 86 Copynumber: 3.2 Consensus size: 85
2212 GTGCAGATGG
* * * * * **
2222 TGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTGTCGATGGTTCCCGATGGTCCCGCACCATT
1 TGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTGATGGTCCCACACCACC
* * *
2287 ACCAACCGAAGTTACCACTGA
66 ATCGACCTAAGTTACCA-TGA
* * * * *
2308 TGTCCGATGCTATTGCACATCGAAGGCACCAGGGTGTCGATGCTTCTTGATGGTCCC-CTACCAC
1 TGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTGATGGTCCCAC-ACCAC
* * *
2372 CATCGACCTAAGTTGTCGATGG
65 CATCGACCTAAGTT-ACCATGA
* * * * *
2394 TGTTCAATGGTCTCGCACATCAAAGGCACCAAGGTGTCGATACTTCCTAATGGTCCCACACCACC
1 TGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTGATGGTCCCACACCACC
* *
2459 ATCGGCCTATGTTA--ATGA
66 ATCGACCTAAGTTACCATGA
*
2477 TGGTGACCGATGCACTCGCAC
1 T-GT--CCGATGCTCTCGCAC
2498 CACTATCGAG
Statistics
Matches: 150, Mismatches: 34, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
83 4 0.03
84 2 0.01
85 1 0.01
86 140 0.93
87 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (85 bp):
TGTCCGATGCTCTCGCACATCAAAGGCACCAAGGTGTCGATGCTTCCTGATGGTCCCACACCACC
ATCGACCTAAGTTACCATGA
Found at i:10425 original size:18 final size:19
Alignment explanation
Indices: 10391--10426 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10381 TCCGGAATAA
10391 AACAAACCCCGTCCTCATG
1 AACAAACCCCGTCCTCATG
10410 AACAAACCCC-TCCTCAT
1 AACAAACCCCGTCCTCAT
10427 CATGTGTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.33, C:0.44, G:0.06, T:0.17
Consensus pattern (19 bp):
AACAAACCCCGTCCTCATG
Found at i:10770 original size:43 final size:43
Alignment explanation
Indices: 10565--10784 Score: 178
Period size: 43 Copynumber: 5.1 Consensus size: 43
10555 AGCCCGATTG
* * *
10565 TCCCATACATCCAACGCACCAAGGTGCCGATGGTGTCCGAGGC
1 TCCCGTACATCCAAAGCACCAAGGTGCCGATGGTGTCCGATGC
* * * * * * *
10608 TCTCGTACCA-CCATCAA-C-CTATGTTGTCGATGATGTCTGATGC
1 TCCCGTA-CATCCA--AAGCACCAAGGTGCCGATGGTGTCCGATGC
* * * * ** *
10651 TTCGGTACATCCAAGGCACCAAGGTGCCAATGCAGCCCGATGC
1 TCCCGTACATCCAAAGCACCAAGGTGCCGATGGTGTCCGATGC
* **
10694 TCCCGTACATCCAAGGCACCAAGGTGCTAATGGTGTCCGATGC
1 TCCCGTACATCCAAAGCACCAAGGTGCCGATGGTGTCCGATGC
* *
10737 TCCCGCACATCCAAAGCACCAAGGTGCCGATGGT-TCTCGATGG
1 TCCCGTACATCCAAAGCACCAAGGTGCCGATGGTGTC-CGATGC
10780 TCCCG
1 TCCCG
10785 CACTAGCACC
Statistics
Matches: 136, Mismatches: 34, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 126 0.93
44 3 0.02
45 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (43 bp):
TCCCGTACATCCAAAGCACCAAGGTGCCGATGGTGTCCGATGC
Found at i:10864 original size:86 final size:85
Alignment explanation
Indices: 10743--10956 Score: 191
Period size: 86 Copynumber: 2.5 Consensus size: 85
10733 ATGCTCCCGC
* * ** * * * * **
10743 ACATCCAAAGCACCAAGGTGCCGATGGTTCTCGATGGTCCCGCACTAGCACCGACCAAAGTTGTC
1 ACATCTAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCGCACCACCACCGACCAAAGTTACC
10808 GATGGTG-CTAGATGCTACCGT-
66 GATGGTGTCTA-ATGCT-CC-TA
* * * * * * **
10829 ATAT-TGAAGGCACCAAGTTGTCGGTGCTTCCCGATGATCCCGTACCACCATTGACCAAAGTTAC
1 ACATCT-AAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCGCACCACCACCGACCAAAGTTAC
*
10893 CGATGGTGTCTAATGGTCCTA
65 CGATGGTGTCTAATGCTCCTA
10914 CACATCTAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCG
1 -ACATCTAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCG
10957 TATCACCATC
Statistics
Matches: 101, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
84 1 0.01
85 2 0.02
86 94 0.93
87 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (85 bp):
ACATCTAAGGCACCAAGGTATCGATGCTTCCCGATGGTCCCGCACCACCACCGACCAAAGTTACC
GATGGTGTCTAATGCTCCTA
Found at i:11245 original size:85 final size:85
Alignment explanation
Indices: 11006--11388 Score: 321
Period size: 86 Copynumber: 4.5 Consensus size: 85
10996 CCCGCACCAA
* * *
11006 CATCGGGC-TAAGTTATCGATGGTGTCTGATGCTCCCGCACATCCAAGGAACTAAGGTACCCG-T
1 CATC-GGCTTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTA-CCGAT
* *
11069 GCTTCCCGATGGT--CTTACACC
64 GCTTCCCAATGGTCCCGTAC-CC
* * * *
11090 ACAATCGGCTTAAGTTACCGATAGTGTCCGATGCTCCCGCACATCCAAGGCACCAAAGTACTGAT
1 -C-ATCGGCTTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGAT
*
11155 GCTTCCTC-ATGATCCCGTACCC
64 GCTTCC-CAATGGTCCCGTACCC
* * * * *
11177 CATCAGCTTATGTTATCGATGGTGTCCGATGCTTCCGCCCATCCAAGGCACCAAGGTACCGATAC
1 CATCGGCTTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGC
*
11242 TTCCCAATGGTCCCGCACCAC
66 TTCCCAATGGTCCCGTACC-C
* * * * **** * * ** *
11263 CACCGGCCTAAGTTGTCGATGGTGTTCGATGCTTATACACATCAAAGGCACCAATGTGTCAATGC
1 CATCGGCTTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGC
*
11328 TT-CCAGATGGTTCCGTACCAC
66 TTCCCA-ATGGTCCCGTACC-C
* * * *
11349 CATTGGCCTAAGTTA-CTGATGGTGTCCGATGGTCTCGCAC
1 CATCGGCTTAAGTTATC-GATGGTGTCCGATGCTCCCGCAC
11389 CACCACCAGC
Statistics
Matches: 241, Mismatches: 47, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
84 1 0.00
85 80 0.33
86 153 0.63
87 3 0.01
88 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (85 bp):
CATCGGCTTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGCACCAAGGTACCGATGC
TTCCCAATGGTCCCGTACCC
Found at i:11313 original size:86 final size:85
Alignment explanation
Indices: 11100--11316 Score: 220
Period size: 85 Copynumber: 2.5 Consensus size: 85
11090 ACAATCGGCT
* * ** * * *
11100 TAAGTTACCGATAGTGTCCGATGCTCCCGCACATCCAAGGCACCAAAGTACTGATGCTTCCTCAT
1 TAAGTTATCGATGGTGTCCGATGCTTACACACATCCAAGGCACCAAAGTACCGATACTTCCTCAT
* * *
11165 GATCCCGTACCCCATCAGCT
66 GATCCCGCACCCCACCAGCC
* * * * *
11185 TATGTTATCGATGGTGTCCGATGCTTCCGCCCATCCAAGGCACCAAGGTACCGATACTTCC-CAA
1 TAAGTTATCGATGGTGTCCGATGCTTACACACATCCAAGGCACCAAAGTACCGATACTTCCTC-A
* *
11249 TGGTCCCGCACCACCACCGGCC
65 TGATCCCGCACC-CCACCAGCC
* * * *
11271 TAAGTTGTCGATGGTGTTCGATGCTTATACACATCAAAGGCACCAA
1 TAAGTTATCGATGGTGTCCGATGCTTACACACATCCAAGGCACCAA
11317 TGTGTCAATG
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
84 1 0.01
85 64 0.59
86 44 0.40
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (85 bp):
TAAGTTATCGATGGTGTCCGATGCTTACACACATCCAAGGCACCAAAGTACCGATACTTCCTCAT
GATCCCGCACCCCACCAGCC
Found at i:11346 original size:171 final size:172
Alignment explanation
Indices: 11013--11388 Score: 382
Period size: 171 Copynumber: 2.2 Consensus size: 172
11003 CAACATCGGG
* * * *
11013 CTAAGTTATCGATGGTGTCTGATGCTCCCGCACATCCAAGGAACTAAGGTACCCGTGCTTCCCGA
1 CTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGAACCAAGGTACCCGTACTTCCCAA
** * * * * *
11078 TGGTCTTACACCACAATCGGCTTAAGTTACCGATAGTGTCCGATGCTCCCGCACATCCAAGGCAC
66 TGGTCCCACACCACAACCGGCCTAAGTTACCGATAGTGTCCGATGCTCACACACATCAAAGGCAC
* *
11143 CAAAGTACTGATGCTTCCTCATGATCCCGTACC-CCATCAGC
131 CAAAGTACTAATGCTTCCACATGATCCCGTACCACCATCAGC
* * * * *
11184 TTATGTTATCGATGGTGTCCGATGCTTCCGCCCATCCAAGGCACCAAGGTA-CCGATACTTCCCA
1 CTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGAACCAAGGTACCCG-TACTTCCCA
* * ** * * * *
11248 ATGGTCCCGCACCACCACCGGCCTAAGTTGTCGATGGTGTTCGATGCTTATACACATCAAAGGCA
65 ATGGTCCCACACCACAACCGGCCTAAGTTACCGATAGTGTCCGATGCTCACACACATCAAAGGCA
* * * * * **
11313 CCAATGT-GTCAATGCTTCCAGATGGTTCCGTACCACCATTGGC
130 CCAAAGTACT-AATGCTTCCACATGATCCCGTACCACCATCAGC
* *
11356 CTAAGTTA-CTGATGGTGTCCGATGGTCTCGCAC
1 CTAAGTTATC-GATGGTGTCCGATGCTCCCGCAC
11389 CACCACCAGC
Statistics
Matches: 162, Mismatches: 39, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
170 4 0.02
171 127 0.78
172 31 0.19
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (172 bp):
CTAAGTTATCGATGGTGTCCGATGCTCCCGCACATCCAAGGAACCAAGGTACCCGTACTTCCCAA
TGGTCCCACACCACAACCGGCCTAAGTTACCGATAGTGTCCGATGCTCACACACATCAAAGGCAC
CAAAGTACTAATGCTTCCACATGATCCCGTACCACCATCAGC
Found at i:11454 original size:53 final size:52
Alignment explanation
Indices: 11374--11481 Score: 144
Period size: 53 Copynumber: 2.1 Consensus size: 52
11364 CTGATGGTGT
* * * * *
11374 CCGATGGTCTCGCACCACCACCAGCCTAAGTTGCTGATGGTGTTCGATGCTTC
1 CCGATGGTCCCACACCACCACCAGCCTAAGTTACCGATAGTGTTCGATGC-TC
* *
11427 CCGATGGTCCCACACCATCACTAGCCTAAGTTACCGATAGTGTTCGATGCTC
1 CCGATGGTCCCACACCACCACCAGCCTAAGTTACCGATAGTGTTCGATGCTC
11479 CCG
1 CCG
11482 CACATCTAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
52 5 0.10
53 43 0.90
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (52 bp):
CCGATGGTCCCACACCACCACCAGCCTAAGTTACCGATAGTGTTCGATGCTC
Found at i:11538 original size:43 final size:43
Alignment explanation
Indices: 11470--11551 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
11460 CCGATAGTGT
* *
11470 TCGATGCTCCCGCACATCTAAGGCACCAAGGTGCCAATGCTTC
1 TCGATGCTCCAGCACATCTAAGGCACCAACGTGCCAATGCTTC
* *
11513 TCGATGGTCCAGCACATC-AATGGCACCAACGTGCTAATG
1 TCGATGCTCCAGCACATCTAA-GGCACCAACGTGCCAATG
11552 GTGTCCGACG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.26, C:0.32, G:0.22, T:0.21
Consensus pattern (43 bp):
TCGATGCTCCAGCACATCTAAGGCACCAACGTGCCAATGCTTC
Found at i:11664 original size:19 final size:21
Alignment explanation
Indices: 11621--11664 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
11611 TTTGTATTTA
*
11621 TAAAATATAATATAAAAATTC
1 TAAAATATAATATAAAAAATC
*
11642 TAAAATATTAT-TAAAAAAT-
1 TAAAATATAATATAAAAAATC
11661 TAAA
1 TAAA
11665 GAAAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 7 0.33
21 10 0.48
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
TAAAATATAATATAAAAAATC
Found at i:18344 original size:218 final size:217
Alignment explanation
Indices: 17951--18497 Score: 561
Period size: 218 Copynumber: 2.5 Consensus size: 217
17941 TTTTTTTTAA
* ** * * *
17951 AAAAAACTAAAGATAATATTCTTTTATTTTAGGGGATTCGAGAATTTGTGTCCTAACTTGTTAGA
1 AAAAAAC-AAAGATAATGTTCTTTTATTTTAGGAAATTCGAGAAATTGTGTCCTAACGTGTTAGG
*
18016 TATGATTTTTCTTTGAATCTAAATAAATGAATATCCTATCTAAAATCGATAATCACCATTTTTAT
65 TATGATTTTCCTTTGAATCTAAATAAATGAATATCCTATCTAAAATCGATAATCACCATTTTTAT
* * * * * *
18081 TTGTAAATTACGTGGATTTATCCATCTTTTGCAAAACGTTTTTAACAAAATAAAAT-GTATATAT
130 TTATAAAATACATGGATTTATCCATATTTTGCAAAACGATTTTAACAAAAT-AAATCGTATAT-C
18145 ATTTTTAAAATACATAAATTGTTTT
193 ATTTTTAAAATACATAAATTGTTTT
* * *
18170 AAAAAACAAAGATAATGTTCTTTTATTTTAGGAAATTCGAAAAATTGTGTCGTAACGTGTTGGGT
1 AAAAAACAAAGATAATGTTCTTTTATTTTAGGAAATTCGAGAAATTGTGTCCTAACGTGTTAGGT
* * * * * * **
18235 ATGATTTTCCTTTGAA-CTTAACT-AATCTAGTAT-CT-TCTTTAAATTGGTAATTGCCATTTTT
66 ATGATTTTCCTTTGAATC-TAAATAAAT-GAATATCCTATC-TAAAATCGATAATCACCATTTTT
* *
18296 TTTTATAAAATACATAGTTATTTATCCATATTTTGCAAAAC-ATTTTAACAAAATAAATCGTATA
128 ATTTATAAAATACAT-G-GATTTATCCATATTTTGCAAAACGATTTTAACAAAATAAATCGTATA
* *
18360 TCGTTTTTAAAGTACATAAATTGTTTT
191 TCATTTTTAAAATACATAAATTGTTTT
** * * * * *
18387 AAAAAA-ATTAAGGCAATGTTATTTTATTTTA-AAGAATTTGAGAAATTGTGTCCTAGCGTGTTC
1 AAAAAACA--AAGATAATGTTCTTTTATTTTAGGA-AATTCGAGAAATTGTGTCCTAACGTGTTA
** * * * * *
18450 GGTATGATTTTTTTTTTAACCTAAATAATTGAGTATCCTATTTAAAAT
63 GGTATGATTTTCCTTTGAATCTAAATAAATGAATATCCTATCTAAAAT
18498 TTATAAGTGC
Statistics
Matches: 270, Mismatches: 45, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
216 3 0.01
217 69 0.26
218 159 0.59
219 38 0.14
220 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (217 bp):
AAAAAACAAAGATAATGTTCTTTTATTTTAGGAAATTCGAGAAATTGTGTCCTAACGTGTTAGGT
ATGATTTTCCTTTGAATCTAAATAAATGAATATCCTATCTAAAATCGATAATCACCATTTTTATT
TATAAAATACATGGATTTATCCATATTTTGCAAAACGATTTTAACAAAATAAATCGTATATCATT
TTTAAAATACATAAATTGTTTT
Found at i:21717 original size:20 final size:21
Alignment explanation
Indices: 21682--21731 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
21672 CTGTCAACCT
*
21682 GGTATCGATACCTTTT-GTAA
1 GGTATCGATAACTTTTGGTAA
*
21702 GGTATCGATAATTTTTGGTAA
1 GGTATCGATAACTTTTGGTAA
*
21723 -ATATCGATA
1 GGTATCGATA
21732 CAAAACTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (21 bp):
GGTATCGATAACTTTTGGTAA
Found at i:21753 original size:92 final size:93
Alignment explanation
Indices: 21619--21809 Score: 216
Period size: 92 Copynumber: 2.1 Consensus size: 93
21609 TTGGCATCGG
* *
21619 TATTTTTAG-AAATTATCGATACCAAATGTGAAAAACGAGACCAAGAAGACATTCTGT-CAAC-C
1 TATTTTTGGTAAA-TATCGATACAAAATGTGAAAAACGAGACCAAGAAGAC--TCTGTGCAACTC
21681 TGGTATCGATACCTTTTGTA-AGGTATCGATA
63 TGGTATCGATACCTTTT-TAGAGGTATCGATA
* * * *
21712 -ATTTTTGGTAAATATCGATACAAAACT-T-AAAAATCGAGACCAAGGAGGCTCTTTGGAACTCT
1 TATTTTTGGTAAATATCGATACAAAA-TGTGAAAAA-CGAGACCAAGAAGACTCTGTGCAACTCT
*
21774 GGTATCGATACCTTTTTAGAGGTATTGATA
64 GGTATCGATACCTTTTTAGAGGTATCGATA
21804 TATTTT
1 TATTTT
21810 GTTGAAATAT
Statistics
Matches: 84, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
90 4 0.05
91 10 0.12
92 61 0.73
93 9 0.11
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (93 bp):
TATTTTTGGTAAATATCGATACAAAATGTGAAAAACGAGACCAAGAAGACTCTGTGCAACTCTGG
TATCGATACCTTTTTAGAGGTATCGATA
Found at i:22819 original size:23 final size:23
Alignment explanation
Indices: 22723--22819 Score: 76
Period size: 23 Copynumber: 4.2 Consensus size: 23
22713 AAAAAGTATT
*
22723 GAGCACACAAAGTGCTAATCGAA
1 GAGCACACAAAGTGCTAAACGAA
* *
22746 GAGCACACGAAGTGCTAACATCGGA
1 GAGCACACAAAGTGCTAA-A-CGAA
* *
22771 GAG-ACGA-AACGTGCTAAAC-AGG
1 GAGCAC-ACAAAGTGCTAAACGA-A
22793 GAGCACA-AATAGTGCTAAACGAA
1 GAGCACACAA-AGTGCTAAACGAA
22816 GAGC
1 GAGC
22820 GCGCTAAGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
22 7 0.12
23 33 0.57
24 11 0.19
25 7 0.12
ACGTcount: A:0.41, C:0.21, G:0.27, T:0.11
Consensus pattern (23 bp):
GAGCACACAAAGTGCTAAACGAA
Found at i:22930 original size:20 final size:20
Alignment explanation
Indices: 22907--22950 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
22897 ACATCATTTT
22907 TCACCATAACACATAATTAC
1 TCACCATAACACATAATTAC
* * *
22927 TCACCATAATACATCATTAT
1 TCACCATAACACATAATTAC
22947 TCAC
1 TCAC
22951 ATTTTTCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.30
Consensus pattern (20 bp):
TCACCATAACACATAATTAC
Found at i:23700 original size:20 final size:20
Alignment explanation
Indices: 23675--23713 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23665 TATTCTTTTC
*
23675 ATCATTTCATCTCATATATT
1 ATCATTTAATCTCATATATT
*
23695 ATCATTTAATTTCATATAT
1 ATCATTTAATCTCATATAT
23714 CACCATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
ATCATTTAATCTCATATATT
Found at i:23726 original size:17 final size:17
Alignment explanation
Indices: 23706--23738 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23696 TCATTTAATT
*
23706 TCATATATCACCATTAA
1 TCATATATCAACATTAA
23723 TCATATATCAACATTA
1 TCATATATCAACATTA
23739 TGAACTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.36
Consensus pattern (17 bp):
TCATATATCAACATTAA
Found at i:30471 original size:18 final size:18
Alignment explanation
Indices: 30450--30484 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
30440 CCAGATACGA
30450 TCATAGAACCAGATGCAG
1 TCATAGAACCAGATGCAG
* *
30468 TCATATAATCAGATGCA
1 TCATAGAACCAGATGCA
30485 ACCATAAGCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (18 bp):
TCATAGAACCAGATGCAG
Found at i:36503 original size:3 final size:3
Alignment explanation
Indices: 36495--36549 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
36485 ATTGAAGCAA
* *
36495 AAG AAG AAG AAAG AA- AAG AAG AAG AAA AAG AAG -AG AAGG AAG AAA
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AAG
36540 AAG AAG AAG A
1 AAG AAG AAG A
36550 TGTTACCCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 34 0.77
4 6 0.14
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:36513 original size:15 final size:15
Alignment explanation
Indices: 36493--36549 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
36483 GTATTGAAGC
36493 AAAAGAAGAAGAAAG
1 AAAAGAAGAAGAAAG
36508 AAAAGAAGAAGAAA-
1 AAAAGAAGAAGAAAG
*
36522 AAGAAG-AGAAGGAAG
1 AA-AAGAAGAAGAAAG
36537 AAAAAGAAGAAGA
1 -AAAAGAAGAAGA
36550 TGTTACCCTG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 9 0.25
15 20 0.56
16 7 0.19
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
AAAAGAAGAAGAAAG
Found at i:37610 original size:2 final size:2
Alignment explanation
Indices: 37603--37639 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
37593 ATAAAAAGAA
*
37603 AT AT AT AT AT AT AT AT AT AT AT GT AT AT -T AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37640 ATAAATGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:40822 original size:24 final size:25
Alignment explanation
Indices: 40794--40855 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
40784 CTTTATTATT
40794 ACTTTTTAATTATT-ACTTTCCATA
1 ACTTTTTAATTATTAACTTTCCATA
* **
40818 ACTTTAATAATT-TTAACTTTCTTTA
1 ACTTT-TTAATTATTAACTTTCCATA
*
40843 AATTTTTAATTAT
1 ACTTTTTAATTAT
40856 ATTTTATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.56
Consensus pattern (25 bp):
ACTTTTTAATTATTAACTTTCCATA
Found at i:40861 original size:19 final size:21
Alignment explanation
Indices: 40839--40885 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
40829 TTTAACTTTC
40839 TTTA-AATTTTTA-ATTATAT
1 TTTATAATTTTTATATTATAT
40858 TTTATAATTTTTATATTATAT
1 TTTATAATTTTTATATTATAT
40879 TTTATAA
1 TTTATAA
40886 ATATAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 4 0.15
20 8 0.31
21 14 0.54
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTATAATTTTTATATTATAT
Found at i:41023 original size:43 final size:41
Alignment explanation
Indices: 40962--41081 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 41
40952 CATTGACACG
40962 TTGGTGCCCTGGATATGCTTGACCATCGGGAAGCATTAGCACC
1 TTGGTGCCCTGGATATGCTTGACCATCGGGAAGCATTAG--CC
* ** *
41005 TTGGTGCCCTGGATATGCTTGACCATTGACAA-C-TTAGGC
1 TTGGTGCCCTGGATATGCTTGACCATCGGGAAGCATTAGCC
41044 TGGTGGTGCCCTGGATATG-TTGGACCATCGGGAAGCAT
1 T--TGGTGCCCTGGATATGCTT-GACCATCGGGAAGCAT
41082 CGACACCTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 29 0.45
42 2 0.03
43 30 0.46
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.28
Consensus pattern (41 bp):
TTGGTGCCCTGGATATGCTTGACCATCGGGAAGCATTAGCC
Found at i:41177 original size:86 final size:86
Alignment explanation
Indices: 41087--41827 Score: 383
Period size: 86 Copynumber: 8.4 Consensus size: 86
41077 AGCATCGACA
* * *
41087 CCTTGGATGTGTAGGAGCATCGGACACCATCGACAACTTAGGCCGGTAGTGGTACGGAACCATCA
1 CCTTGGATGTGTAGGAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATCA
*
41152 TGAAGCATCGACACCTTGGTG
66 GGAAGCATCGACACCTTGGTG
* ** * ** * * * * * *
41173 CCTTGGTTGTGCGGGAGCATCGAACACCATCGGTAACTTAGGTCGGTGGTGGCGCGGGACCAGCG
1 CCTTGGATGTGTAGGAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATCA
* * * *
41238 GGAAGCATTGGACACCATCGATAA
66 GGAAGCA-TCGACACC-TTGGT-G
* * * *
41262 CCTAGGTCGGTGATGGTGCGAGACCATCGGGAAGCATCGGACACCATC-AGTAACATAGGCCGAT
1 CCT---T--G-GAT-GTG-TAG--GA--G-----CATCGGACACCATCGA-CAACTTAGGCCGAT
* * * * *
41326 GGTGGTAC-GAGACCATTAGAAAGCAACGGCACCTTGGTG
48 GGTGGTGCGGA-ACCATCAGGAAGCATCGACACCTTGGTG
* * ** * * * **
41365 CCTTGGA--TGTACGAGAGCATCGTACATCATCGGTAACTTAGGCCGGTGATGGTGCGGGATGAT
1 CCTTGGATGTGTA-G-GAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCAT
** * *
41428 CAGGAAGCATCGGTACCTCGGGG
64 CAGGAAGCATCGACACCTTGGTG
* * * * *
41451 CCTTGGATGTG-CGAGAGCATC-GACA-CATCGACAACTTATGCCGATGATGGTGCGAAACTATC
1 CCTTGGATGTGTAG-GAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATC
* * *
41513 GGGAAACATCGGCACCTTGGTG
65 AGGAAGCATCGACACCTTGGTG
* * * ** * * * *
41535 CCTTGGATGTGTGGGAGCATCGAACACCGTCGGTAACTTAGGCCGATGATGTTGTGGGACCATC-
1 CCTTGGATGTGTAGGAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATCA
*
41599 GAGAAGCATTGACACCTTGGTG
66 G-GAAGCATCGACACCTTGGTG
* * *
41621 CCTTGGATGTG-CGGCAGCATCGGACACCATCGACAACTTAAGCCGATTGTGGTGC-GAGACCAT
1 CCTTGGATGTGTAGG-AGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGA-ACCAT
* * *
41684 CGGGAAGTATCGACACCTTGATG
64 CAGGAAGCATCGACACCTTGGTG
* * * * * * * * * *
41707 CCTTAGATGTAT-GGAAGAATCGAACACAATCAACAACATAGGCCAATGGTGGTACGGGACCATC
1 CCTTGGATGTGTAGG-AGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATC
* ** *
41771 -GACAAGCATCGGGACCTTAGTG
65 AG-GAAGCATCGACACCTTGGTG
*
41793 CCTTGGATGTG-CGAGAGCATCGGACACCATCGACA
1 CCTTGGATGTGTAG-GAGCATCGGACACCATCGACA
41828 CCTTGGTGCC
Statistics
Matches: 489, Mismatches: 127, Indels: 78
0.70 0.18 0.11
Matches are distributed among these distances:
84 64 0.13
85 12 0.02
86 322 0.66
87 11 0.02
88 5 0.01
89 3 0.01
91 1 0.00
92 1 0.00
93 2 0.00
94 4 0.01
95 2 0.00
96 3 0.01
97 3 0.01
98 1 0.00
99 1 0.00
100 1 0.00
101 1 0.00
103 3 0.01
104 3 0.01
105 6 0.01
106 40 0.08
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (86 bp):
CCTTGGATGTGTAGGAGCATCGGACACCATCGACAACTTAGGCCGATGGTGGTGCGGAACCATCA
GGAAGCATCGACACCTTGGTG
Found at i:41341 original size:53 final size:52
Alignment explanation
Indices: 41184--41341 Score: 183
Period size: 53 Copynumber: 3.0 Consensus size: 52
41174 CTTGGTTGTG
* * * * *
41184 CGGG-AGCATCGAACACCATCGGTAACTTAGGTCGGTGGTGGCGCGGGACCAG
1 CGGGAAGCATCGGACACCATC-GTAACATAGGTCGGTGGTGGTGCGAGACCAT
* * *
41236 CGGGAAGCATTGGACACCATCGATAACCTAGGTCGGTGATGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCG-TAACATAGGTCGGTGGTGGTGCGAGACCAT
* * *
41289 CGGGAAGCATCGGACACCATCAGTAACATAGGCCGATGGTGGTACGAGACCAT
1 CGGGAAGCATCGGACACCATC-GTAACATAGGTCGGTGGTGGTGCGAGACCAT
41342 TAGAAAGCAA
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
52 5 0.06
53 84 0.93
54 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.34, T:0.16
Consensus pattern (52 bp):
CGGGAAGCATCGGACACCATCGTAACATAGGTCGGTGGTGGTGCGAGACCAT
Found at i:41350 original size:53 final size:53
Alignment explanation
Indices: 41240--41358 Score: 125
Period size: 53 Copynumber: 2.3 Consensus size: 53
41230 GACCAGCGGG
* * * * * * *
41240 AAGCATTGGACACCATCGATAACCTAGGTCGGTGATGGTGCGAGACCATCGGG
1 AAGCATCGGACACCATCGATAACATAGGCCGATGATGGTACGAGACCATCAGA
* *
41293 AAGCATCGGACACCATC-AGTAACATAGGCCGATGGTGGTACGAGACCATTAGA
1 AAGCATCGGACACCATCGA-TAACATAGGCCGATGATGGTACGAGACCATCAGA
*
41346 AAGCAACGG-CACC
1 AAGCATCGGACACC
41359 TTGGTGCCTT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
52 5 0.09
53 50 0.91
ACGTcount: A:0.31, C:0.24, G:0.29, T:0.16
Consensus pattern (53 bp):
AAGCATCGGACACCATCGATAACATAGGCCGATGATGGTACGAGACCATCAGA
Found at i:41732 original size:172 final size:172
Alignment explanation
Indices: 41294--41994 Score: 611
Period size: 172 Copynumber: 4.1 Consensus size: 172
41284 ACCATCGGGA
* * * * * ** * *
41294 AGCATCGGACACCATC-AGTAACATAGGCCGATGGTGGTACGAGACCATTAGAAAGCAACGGCAC
1 AGCATCGGACACCATCGA-CAACTTAAGCCGATTGTGGTGCGAGACCATCGGGAAGCATCGGCAC
* * * *
41358 CTTGGTGCCTTGGATGTA-CGAGAGCATCGTACATCATCGGTAACTTAGGCCGGTGATGGTGCGG
65 CTTGGTGCCTTGGATGTATGGA-AGCATCGAACACCATCGGTAACTTAGGCCGATGATGGTGCGG
** * * *
41422 GATGATC-AGGAAGCATCGGTACCTCGGGGCCTTGGATGTGCGAG
129 GACCATCGA-GAAGCATCGGCACCTTGGTGCCTTGGATGTGCGAG
* * * *
41466 AGCATC-GACA-CATCGACAACTTATGCCGA-TGATGGTGCGAAACTATCGGGAAACATCGGCAC
1 AGCATCGGACACCATCGACAACTTAAGCCGATTG-TGGTGCGAGACCATCGGGAAGCATCGGCAC
* * * * *
41528 CTTGGTGCCTTGGATGTGTGGGAGCATCGAACACCGTCGGTAACTTAGGCCGATGATGTTGTGGG
65 CTTGGTGCCTTGGATGTATGGAAGCATCGAACACCATCGGTAACTTAGGCCGATGATGGTGCGGG
* *
41593 ACCATCGAGAAGCATTGACACCTTGGTGCCTTGGATGTGCG-G
130 ACCATCGAGAAGCATCGGCACCTTGGTGCCTTGGATGTGCGAG
* *
41635 CAGCATCGGACACCATCGACAACTTAAGCCGATTGTGGTGCGAGACCATCGGGAAGTATCGACAC
1 -AGCATCGGACACCATCGACAACTTAAGCCGATTGTGGTGCGAGACCATCGGGAAGCATCGGCAC
* * * * *** * * * *
41700 CTTGATGCCTTAGATGTATGGAAGAATCGAACACAATCAACAACATAGGCCAATGGTGGTACGGG
65 CTTGGTGCCTTGGATGTATGGAAGCATCGAACACCATCGGTAACTTAGGCCGATGATGGTGCGGG
* * *
41765 ACCATCGACAAGCATCGGGACCTTAGTGCCTTGGATGTGCGAG
130 ACCATCGAGAAGCATCGGCACCTTGGTGCCTTGGATGTGCGAG
* ** * *
41808 AGCATCGGACACCATCGACACCTTGGTGCC--TTGAAT-GTGCGAGAGCATCGGGCAAGAAT-GG
1 AGCATCGGACACCATCGACAACTT-AAGCCGATTG--TGGTGCGAGACCATCGGG-AAGCATCGG
* * ** * * * *
41869 TACCTTGGTGCCTTGGATGTACAGG-AGCATCGAGTAGCATCGGTACCTTGGTGCC-TTCGAT-G
62 CACCTTGGTGCCTTGGATGTA-TGGAAGCATCGAACACCATCGGTAACTTAG-GCCGAT-GATGG
* * * * *
41931 TGCGGGAGCATCGAGCAGCATCGGTACCTTGGTGCCTTGGATGTACGGG
124 TGCGGGACCATCGAGAAGCATCGGCACCTTGGTGCCTTGGATGTGCGAG
* *
41980 ACCATCAGACACCAT
1 AGCATCGGACACCAT
41995 TGGCAACATA
Statistics
Matches: 425, Mismatches: 88, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
169 2 0.00
170 128 0.30
171 14 0.03
172 262 0.62
173 19 0.04
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (172 bp):
AGCATCGGACACCATCGACAACTTAAGCCGATTGTGGTGCGAGACCATCGGGAAGCATCGGCACC
TTGGTGCCTTGGATGTATGGAAGCATCGAACACCATCGGTAACTTAGGCCGATGATGGTGCGGGA
CCATCGAGAAGCATCGGCACCTTGGTGCCTTGGATGTGCGAG
Found at i:41831 original size:43 final size:43
Alignment explanation
Indices: 41355--41974 Score: 198
Period size: 43 Copynumber: 14.5 Consensus size: 43
41345 AAAGCAACGG
* * * *
41355 CACCTTGGTGCCTTGGATGTACGAGAGCATCGTACATCATCGG
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGACAGCATCGA
* * * * * *
41398 TAACTTAG-GCC-GGTGATGGTGCGGGATG-ATCAGGA-AGCATCGG
1 CACCTTGGTGCCTTG-GAT-GTGCGAGA-GCATC-GGACAGCATCGA
* * *
41441 TACCTCGGGGCCTTGGATGTGCGAGAGCATC-GACA-CATCGA
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGACAGCATCGA
* * * * * *
41482 CAACTT-ATGCCGAT-GATGGTGCGA-AACTATCGGGA-AACATCGG
1 CACCTTGGTGCC-TTGGAT-GTGCGAGAGC-ATC-GGACAGCATCGA
* * * * * *
41525 CACCTTGGTGCCTTGGATGTGTGGGAGCATCGAACACCGTCGG
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGACAGCATCGA
* * * * * * * *
41568 TAACTTAG-GCCGAT-GATGTTGTGGGACCATCGAGA-AGCATTGA
1 CACCTTGGTGCC-TTGGATG-TGCGAGAGCATCG-GACAGCATCGA
*
41611 CACCTTGGTGCCTTGGATGTGCG-GCAGCATCGGACACCATCGA
1 CACCTTGGTGCCTTGGATGTGCGAG-AGCATCGGACAGCATCGA
* ** * *
41654 CAACTT-AAGCCGATT-G-TGGTGCGAGACCATCGGGA-AGTATCGA
1 CACCTTGGTGCC--TTGGAT-GTGCGAGAGCATC-GGACAGCATCGA
* * * * *
41697 CACCTTGATGCCTTAGATGTATG-GA-AGAATCGAACA-CAATCAA
1 CACCTTGGTGCCTTGGATG--TGCGAGAGCATCGGACAGC-ATCGA
* * * * * * * *
41740 CAACATAG-GCCAATGG-TGGTACGGGACCATC-GACAAGCATCGG
1 CACCTTGGTGCC-TTGGAT-GTGCGAGAGCATCGGAC-AGCATCGA
* * *
41783 GACCTTAGTGCCTTGGATGTGCGAGAGCATCGGACACCATCGA
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGACAGCATCGA
* * * *
41826 CACCTTGGTGCCTTGAATGTGCGAGAGCATCGGGCAAGAAT-GG
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGAC-AGCATCGA
* * * *
41869 TACCTTGGTGCCTTGGATGTAC-AGGAGCATC-GAGTAGCATCGG
1 CACCTTGGTGCCTTGGATGTGCGA-GAGCATCGGA-CAGCATCGA
* * * *
41912 TACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAGCAGCATCGG
1 CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGA-CAGCATCGA
*
41955 TACCTTGGTGCCTTGGATGT
1 CACCTTGGTGCCTTGGATGT
41975 ACGGGACCAT
Statistics
Matches: 424, Mismatches: 102, Indels: 102
0.68 0.16 0.16
Matches are distributed among these distances:
40 8 0.02
41 22 0.05
42 42 0.10
43 299 0.71
44 50 0.12
45 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (43 bp):
CACCTTGGTGCCTTGGATGTGCGAGAGCATCGGACAGCATCGA
Found at i:41980 original size:43 final size:43
Alignment explanation
Indices: 41758--41985 Score: 246
Period size: 43 Copynumber: 5.3 Consensus size: 43
41748 GCCAATGGTG
* * *
41758 GTACGGGACCATCGA-CAAGCATCGGGACCTTAGTGCCTTGGAT
1 GTACGGGAGCATCGAGC-AGCATCGGTACCTTGGTGCCTTGGAT
* * * ** *
41801 GTGCGAGAGCATCG-GACACCATCGACACCTTGGTGCCTTGAAT
1 GTACGGGAGCATCGAG-CAGCATCGGTACCTTGGTGCCTTGGAT
* * * *
41844 GTGCGAGAGCATCGGGCAAGAAT-GGTACCTTGGTGCCTTGGAT
1 GTACGGGAGCATCGAGC-AGCATCGGTACCTTGGTGCCTTGGAT
* * *
41887 GTACAGGAGCATCGAGTAGCATCGGTACCTTGGTGCCTTCGAT
1 GTACGGGAGCATCGAGCAGCATCGGTACCTTGGTGCCTTGGAT
*
41930 GTGCGGGAGCATCGAGCAGCATCGGTACCTTGGTGCCTTGGAT
1 GTACGGGAGCATCGAGCAGCATCGGTACCTTGGTGCCTTGGAT
*
41973 GTACGGGACCATC
1 GTACGGGAGCATC
41986 AGACACCATT
Statistics
Matches: 154, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
42 4 0.03
43 145 0.94
44 5 0.03
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.22
Consensus pattern (43 bp):
GTACGGGAGCATCGAGCAGCATCGGTACCTTGGTGCCTTGGAT
Found at i:48654 original size:86 final size:86
Alignment explanation
Indices: 48506--49136 Score: 581
Period size: 86 Copynumber: 7.3 Consensus size: 86
48496 GTAGCGCGGC
* * * * *
48506 CACCTTGGTGCCTTGGATGTGCGGGAGCATTGGACACCATTGGCAACTTAGGTC-AGTAGTGGTG
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGA-TGGTGGTG
* *
48570 CTAAACCATCAGGAAGCATCAG
65 CTAGACCATCAGGAAGCATCGG
* * * *
48592 CACCTTGGTGCCTTGGATGTGTGGGAGCATCGGACACCATCGATAACATAGGCCAATGGTGGTG-
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
* * ** *
48656 TGGGACCATAAAAAAGCATGGG
66 T-AGACCATCAGGAAGCATCGG
* * *
48678 TACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGATAACTTAGGCCGATTGTGGTGC
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
* *
48743 GAGACCAGTGA-GAAGCATCGG
66 TAGACCA-TCAGGAAGCATCGG
* * * *
48764 CACCTTGGTGCCTTGGATGTTCGGGAGCATCGGACACTATCGGTAACTTAGGCTGATGATGGTGC
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
** * *
48829 GGGACCATCCGGAAGCATCGA
66 TAGACCATCAGGAAGCATCGG
* * * *
48850 CACCTTGGTGCCTTAGATGTACGGGAGCATCGGACACCATCGGTAACATAGGTCGATGGTGGTGC
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
* *
48915 TAGACCATC-GAGAAGTATCCG
66 TAGACCATCAG-GAAGCATCGG
* * * * * * ** *
48936 CTCCTTGGTGCCTTGAATATGCAGGAGCATCAGACACCATTGGTAACTTAGGTTGATGGTGATGC
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
** * * *
49001 GGGACTATCAGGAGGCATCGA
66 TAGACCATCAGGAAGCATCGG
* * * * * * * * * * **
49022 CAACTTGGTGCCTTAGATGTGCAGAAGCATTGGACACCATCGGCACCTTGGTGCC-TTGATTATG
1 CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAG-GCCGATGGTGGTG
* *
49086 CTAGAGCGTCAGGCAA-CATCGG
65 CTAGACCATCAGG-AAGCATCGG
* *
49108 CAACTTGGTACCTTGGATGTGCGGGAGCA
1 CACCTTGGTGCCTTGGATGTGCGGGAGCA
49137 CAGGGTAGTA
Statistics
Matches: 442, Mismatches: 94, Indels: 18
0.80 0.17 0.03
Matches are distributed among these distances:
85 3 0.01
86 433 0.98
87 6 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (86 bp):
CACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGC
TAGACCATCAGGAAGCATCGG
Found at i:54345 original size:13 final size:13
Alignment explanation
Indices: 54312--54349 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
54302 AACTCAAGGA
* *
54312 AAAAATAAAACAC
1 AAAAATAGAATAC
54325 AAAAATAGAATAC
1 AAAAATAGAATAC
54338 AAAAATAGAATA
1 AAAAATAGAATA
54350 ACTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (13 bp):
AAAAATAGAATAC
Found at i:58199 original size:17 final size:17
Alignment explanation
Indices: 58177--58215 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
58167 AGGTGGAGAA
*
58177 CTTGTTCGTTA-AGAGTT
1 CTTGTTCG-TAGAGAATT
58194 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
58211 CTTGT
1 CTTGT
58216 CAAGGTGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:73104 original size:21 final size:21
Alignment explanation
Indices: 73080--73154 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
73070 AATTAAATGT
73080 TTAAAACATTTTTTAAAATAA
1 TTAAAACATTTTTTAAAATAA
* * *
73101 TTAAAATATGTTTTAGACA-AA
1 TTAAAACATTTTTTA-AAATAA
* * *
73122 TTGAAA-GTTTTTAAAAATAA
1 TTAAAACATTTTTTAAAATAA
73142 TTTAAAATCATTT
1 -TTAAAA-CATTT
73155 AGGATTTATT
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
19 2 0.05
20 7 0.18
21 25 0.64
22 2 0.05
23 3 0.08
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (21 bp):
TTAAAACATTTTTTAAAATAA
Found at i:73219 original size:22 final size:22
Alignment explanation
Indices: 73183--73236 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
73173 GGGGTGTAAA
*
73183 TGAATGTTCGATAAACTATTCG
1 TGAATGTTCGATAAAATATTCG
73205 TGAATTGTTCG-TAAAATATTCG
1 TGAA-TGTTCGATAAAATATTCG
**
73227 TTTATGTTCG
1 TGAATGTTCG
73237 TTTATTAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.21
22 16 0.57
23 6 0.21
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (22 bp):
TGAATGTTCGATAAAATATTCG
Found at i:73373 original size:12 final size:12
Alignment explanation
Indices: 73342--73398 Score: 82
Period size: 12 Copynumber: 4.8 Consensus size: 12
73332 TACGAACAAG
73342 CTCGTTTATTGA
1 CTCGTTTATTGA
*
73354 CTCTTTTATATG-
1 CTCGTTTAT-TGA
73366 CTCGTTTATTGA
1 CTCGTTTATTGA
73378 CTCGTTTA-TGA
1 CTCGTTTATTGA
73389 CTCGTTTATT
1 CTCGTTTATT
73399 TGTTAATGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
11 13 0.32
12 25 0.62
13 2 0.05
ACGTcount: A:0.16, C:0.18, G:0.14, T:0.53
Consensus pattern (12 bp):
CTCGTTTATTGA
Found at i:73596 original size:26 final size:28
Alignment explanation
Indices: 73537--73596 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
73527 CGTGAACATT
*
73537 AAATAAACGAACATGAACACACATAATTTT
1 AAATAAACGAACATGAACACAC--AATTTG
73567 AAATAAACGAACATGAACA-AC-ATTTG
1 AAATAAACGAACATGAACACACAATTTG
73593 AAAT
1 AAAT
73597 TCTTAACGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 8 0.28
29 2 0.07
30 19 0.66
ACGTcount: A:0.55, C:0.15, G:0.08, T:0.22
Consensus pattern (28 bp):
AAATAAACGAACATGAACACACAATTTG
Found at i:76469 original size:30 final size:31
Alignment explanation
Indices: 76402--76469 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
76392 GAAGGTTTCA
*
76402 AAATTAG-CCTCCAACCTTCACTAAAAATTC
1 AAATTAGTCCTCCAACCTCCACTAAAAATTC
* *
76432 AATTTAGTCCTCTAA-CTCCACT-AAAATTAC
1 AAATTAGTCCTCCAACCTCCACTAAAAATT-C
76462 AAATTAGT
1 AAATTAGT
76470 TCCTAAGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 6 0.19
30 20 0.62
31 6 0.19
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.31
Consensus pattern (31 bp):
AAATTAGTCCTCCAACCTCCACTAAAAATTC
Found at i:77947 original size:6 final size:6
Alignment explanation
Indices: 77936--77966 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
77926 CCTAGCAGTA
*
77936 CGACCT CGACCT TGACCT CGACCT CGACCT C
1 CGACCT CGACCT CGACCT CGACCT CGACCT C
77967 TATCGCGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.19
Consensus pattern (6 bp):
CGACCT
Found at i:79610 original size:20 final size:20
Alignment explanation
Indices: 79587--79628 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
79577 AACATTCAAT
*
79587 GGTCAAAGTCAATGGACAAC
1 GGTCAAAGTCAACGGACAAC
* *
79607 GGTCAAGGTCAACGGTCAAC
1 GGTCAAAGTCAACGGACAAC
79627 GG
1 GG
79629 GTCAGGAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.31, T:0.14
Consensus pattern (20 bp):
GGTCAAAGTCAACGGACAAC
Found at i:80879 original size:25 final size:25
Alignment explanation
Indices: 80803--80882 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
80793 AGCACACAAA
*
80803 GTGCTAAT--CGGAGAGCAC-ACGAA
1 GTGCTAATAACGGAGAGCACAAC-AC
80826 GTGCTAATAACGGAGAGCAC-ACAC
1 GTGCTAATAACGGAGAGCACAACAC
*
80850 AGTGCTAATAACGGAGAGCACAATAC
1 -GTGCTAATAACGGAGAGCACAACAC
80876 GTGCTAA
1 GTGCTAA
80883 AATAATGGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
23 8 0.16
24 1 0.02
25 39 0.76
26 3 0.06
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (25 bp):
GTGCTAATAACGGAGAGCACAACAC
Found at i:80895 original size:27 final size:25
Alignment explanation
Indices: 80792--80871 Score: 121
Period size: 25 Copynumber: 3.3 Consensus size: 25
80782 GGGCAATAGT
*
80792 GAGCACACAAAGTGCTAAT--CGGA
1 GAGCACACACAGTGCTAATAACGGA
80815 GAGCACACGA-AGTGCTAATAACGGA
1 GAGCACAC-ACAGTGCTAATAACGGA
80840 GAGCACACACAGTGCTAATAACGGA
1 GAGCACACACAGTGCTAATAACGGA
80865 GAGCACA
1 GAGCACA
80872 ATACGTGCTA
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
23 17 0.32
24 2 0.04
25 34 0.64
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (25 bp):
GAGCACACACAGTGCTAATAACGGA
Found at i:85631 original size:17 final size:18
Alignment explanation
Indices: 85594--85633 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
85584 TAACAAAATG
85594 ATGCAGTGACAAAATAAA
1 ATGCAGTGACAAAATAAA
* *
85612 ATGCAGTGATAATA-AAA
1 ATGCAGTGACAAAATAAA
85629 ATGCA
1 ATGCA
85634 TTAAAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (18 bp):
ATGCAGTGACAAAATAAA
Found at i:89799 original size:11 final size:11
Alignment explanation
Indices: 89767--89800 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
89757 AGGTTTAGCT
*
89767 ATCTTTTAGAA
1 ATCTTTTATAA
*
89778 ATCTTTGATAA
1 ATCTTTTATAA
89789 ATCTTTTATAA
1 ATCTTTTATAA
89800 A
1 A
89801 AGCCCGCGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (11 bp):
ATCTTTTATAA
Found at i:104158 original size:30 final size:29
Alignment explanation
Indices: 104105--104179 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 29
104095 TGAGGGTTTC
*
104105 CAAATTAG-CCCTCAACCTTCACTAAAAATT-
1 CAAATTAGTCCCT-AA-CTCCACT-AAAATTA
*
104135 CAATTTAGTCCTCTAACTCCACTAAAATTA
1 CAAATTAGTCC-CTAACTCCACTAAAATTA
104165 CAAATTAGTCCCTAA
1 CAAATTAGTCCCTAA
104180 GTAAAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 10 0.26
30 23 0.59
31 4 0.10
32 2 0.05
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.29
Consensus pattern (29 bp):
CAAATTAGTCCCTAACTCCACTAAAATTA
Found at i:104699 original size:23 final size:25
Alignment explanation
Indices: 104648--104700 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
104638 ATTTTTTACC
*
104648 TGTAACAGAAAAAAAGTTCACAAAA
1 TGTAACAGAAAAAAAGTACACAAAA
104673 TGTAA-AGAAAAAAA-TACA-AAAA
1 TGTAACAGAAAAAAAGTACACAAAA
104695 TTGTAA
1 -TGTAA
104701 TTTTTCGTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 4 0.15
23 8 0.31
24 9 0.35
25 5 0.19
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (25 bp):
TGTAACAGAAAAAAAGTACACAAAA
Found at i:105484 original size:5 final size:5
Alignment explanation
Indices: 105474--105519 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
105464 TCCCTGTAAT
*
105474 TTTTA TTTTA TTTTA ATTTA GTTTTA TTTTA TTTTA TTTCTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT-TA TTTT
105520 TAATTCATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 28 0.76
6 9 0.24
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:105500 original size:16 final size:15
Alignment explanation
Indices: 105475--105524 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 15
105465 CCCTGTAATT
105475 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
*
105490 TTTAGTTTTATTTTAT
1 TTTA-TTTTATTTTAA
105506 TTTATTTCTATTTTTAA
1 TTTATTT-TA-TTTTAA
105523 TT
1 TT
105525 CATACCTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 7 0.23
16 16 0.53
17 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTATTTTATTTTAA
Found at i:105755 original size:20 final size:21
Alignment explanation
Indices: 105730--105779 Score: 68
Period size: 19 Copynumber: 2.4 Consensus size: 21
105720 TATTCTTAAC
105730 TTTATTTTTTTTTTATG-TAT
1 TTTATTTTTTTTTTATGCTAT
*
105750 TTTA-TTTATTTTTATGCTAT
1 TTTATTTTTTTTTTATGCTAT
105770 TTATATTTTT
1 TT-TATTTTT
105780 GCCTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 11 0.44
20 9 0.36
21 2 0.08
22 3 0.12
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTATTTTTTTTTTATGCTAT
Found at i:106349 original size:19 final size:18
Alignment explanation
Indices: 106322--106361 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
106312 CCTGCAAAAG
106322 AAAGAAAAACACAAAGACA
1 AAAGAAAAACACAAAGA-A
* *
106341 AAAGCAAAAGACAAAGAA
1 AAAGAAAAACACAAAGAA
106359 AAA
1 AAA
106362 CAGGACAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.75, C:0.12, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAGAAAAACACAAAGAA
Found at i:109981 original size:2 final size:2
Alignment explanation
Indices: 109974--110001 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
109964 CATGGTTATC
109974 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110002 TATTTTCCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111248 original size:11 final size:11
Alignment explanation
Indices: 111234--111294 Score: 79
Period size: 11 Copynumber: 5.5 Consensus size: 11
111224 AGATACGTCG
*
111234 GAAAAGAGAAA
1 GAAATGAGAAA
*
111245 GAAATGGGAAA
1 GAAATGAGAAA
*
111256 GAAAAGAGAAA
1 GAAATGAGAAA
111267 GAAATGA-AAGA
1 GAAATGAGAA-A
111278 GAAATGAGAAA
1 GAAATGAGAAA
111289 GAAATG
1 GAAATG
111295 TGAGAGGCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
10 2 0.05
11 39 0.91
12 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.07
Consensus pattern (11 bp):
GAAATGAGAAA
Found at i:111300 original size:22 final size:22
Alignment explanation
Indices: 111234--111300 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
111224 AGATACGTCG
* *
111234 GAAAAGAGAAAGAAATGGGAAA
1 GAAAAGAGAAAGAAATGAGAGA
*
111256 GAAAAGAGAAAGAAATGAAAGA
1 GAAAAGAGAAAGAAATGAGAGA
* *
111278 GAAATGAGAAAGAAATGTGAGA
1 GAAAAGAGAAAGAAATGAGAGA
111300 G
1 G
111301 GCTTTAGAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.61, C:0.00, G:0.31, T:0.07
Consensus pattern (22 bp):
GAAAAGAGAAAGAAATGAGAGA
Found at i:114865 original size:11 final size:11
Alignment explanation
Indices: 114845--114915 Score: 81
Period size: 11 Copynumber: 6.5 Consensus size: 11
114835 AGATACGTCG
114845 GAAA-GAGAAA
1 GAAATGAGAAA
*
114855 GAAATGGGAAA
1 GAAATGAGAAA
*
114866 GAAAAGAGAAA
1 GAAATGAGAAA
*
114877 GAAATTAGAAA
1 GAAATGAGAAA
* *
114888 GAAATGATAGA
1 GAAATGAGAAA
*
114899 TAAATGAGAAA
1 GAAATGAGAAA
114910 GAAATG
1 GAAATG
114916 TGAGAGGCTT
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
10 4 0.08
11 44 0.92
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.11
Consensus pattern (11 bp):
GAAATGAGAAA
Found at i:117399 original size:21 final size:20
Alignment explanation
Indices: 117367--117405 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
117357 AATTTCACCC
*
117367 AAAAAAAGAAAGAAAAAAGG
1 AAAAAAAAAAAGAAAAAAGG
117387 AAAAAGAAAAAAGAAAAAA
1 AAAAA-AAAAAAGAAAAAA
117406 TAAGGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAGAAAAAAGG
Found at i:117402 original size:25 final size:25
Alignment explanation
Indices: 117368--117422 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
117358 ATTTCACCCA
117368 AAAAAAGAAAGAAAAAAGG-AAAAAG
1 AAAAAAGAAA-AAAAAAGGAAAAAAG
*
117393 AAAAAAGAAAAAATAAGGAAAAAAG
1 AAAAAAGAAAAAAAAAGGAAAAAAG
117418 AAAAA
1 AAAAA
117423 GGAGAGGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (25 bp):
AAAAAAGAAAAAAAAAGGAAAAAAG
Found at i:117405 original size:14 final size:14
Alignment explanation
Indices: 117375--117405 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
117365 CCAAAAAAAG
*
117375 AAAGAAAAAAGGAA
1 AAAGAAAAAAGAAA
117389 AAAGAAAAAAGAAA
1 AAAGAAAAAAGAAA
117403 AAA
1 AAA
117406 TAAGGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAGAAA
Found at i:117937 original size:112 final size:112
Alignment explanation
Indices: 117736--117947 Score: 316
Period size: 112 Copynumber: 1.9 Consensus size: 112
117726 ATGGGTCATT
* * * *
117736 TTTAATCTTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTCAATTTTATTCGCCTTGCGACCC
1 TTTAATCTTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTCAATTTTATCCACCTTACAACCC
117801 TATTCAAGCATTTTTGCATCGAAATAACAGTTAGTAGACTGATGATA
66 TATTCAAGCATTTTTGCATCGAAATAACAGTTAGTAGACTGATGATA
* * *
117848 TTTAATCTTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTTAATTTTATCCACCTTACAATCT
1 TTTAATCTTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTCAATTTTATCCACCTTACAACCC
* * * * *
117913 TGTTCAAGTATTTTTGCATTGAAATAGCGGTTAGT
66 TATTCAAGCATTTTTGCATCGAAATAACAGTTAGT
117948 GGTCTAACGA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 88 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (112 bp):
TTTAATCTTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTCAATTTTATCCACCTTACAACCC
TATTCAAGCATTTTTGCATCGAAATAACAGTTAGTAGACTGATGATA
Found at i:118455 original size:49 final size:49
Alignment explanation
Indices: 118364--118617 Score: 224
Period size: 49 Copynumber: 5.2 Consensus size: 49
118354 TGTTTAATAA
* * * * * *
118364 TATATCCTAGAAGAAATGAAGGGAAAGATTAAAGTCGTAATGGAAAATCT
1 TATACCCTAG-AGATATGAAGGGAAAGATTGAAGCCGCAATGGAGAATCT
* * * *
118414 TATACCTTAGATATATAAAGGGAAAGATTGAAGCCGCAATGGTGAATCT
1 TATACCCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGAGAATCT
* * * *
118463 TGTACCCTAGAGATATGGAGGGAAATG-TTGAAGTCGCAAT-GATGAACCT
1 TATACCCTAGAGATATGAAGGGAAA-GATTGAAGCCGCAATGGA-GAATCT
* * * * *
118512 TATACCCTAGAGATATGGAGGGAAAGGTTGAACCCACAATGGTGAATCT
1 TATACCCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGAGAATCT
* * * ** * * *
118561 TATACTCTAGAGATGTGAAGGGAAAAATTTTAGTCGTAATGGCGAATCT
1 TATACCCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGAGAATCT
118610 TATACCCT
1 TATACCCT
118618 GAAGATGAGG
Statistics
Matches: 163, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
48 2 0.01
49 151 0.93
50 10 0.06
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (49 bp):
TATACCCTAGAGATATGAAGGGAAAGATTGAAGCCGCAATGGAGAATCT
Found at i:118596 original size:98 final size:98
Alignment explanation
Indices: 118364--118617 Score: 249
Period size: 98 Copynumber: 2.6 Consensus size: 98
118354 TGTTTAATAA
* * * * * * * * *
118364 TATATCCTAGAAGAAATGAAGGGAAAGATTAAAGTCGTAATGGA-AAATCTTATACCTTAGATAT
1 TATACCCTAG-AGATATGAAGGGAAAAATTGAAGTCGCAAT-GACGAACCTTATACCCTAGAGAT
* *
118428 ATAAAGGGAAAGATTGAAGCCGCAATGGTGAATCT
64 ATAAAGGGAAAGATTGAACCCACAATGGTGAATCT
* * ** *
118463 TGTACCCTAGAGATATGGAGGGAAATGTTGAAGTCGCAATGATGAACCTTATACCCTAGAGATAT
1 TATACCCTAGAGATATGAAGGGAAAAATTGAAGTCGCAATGACGAACCTTATACCCTAGAGATAT
** *
118528 GGAGGGAAAGGTTGAACCCACAATGGTGAATCT
66 AAAGGGAAAGATTGAACCCACAATGGTGAATCT
* * ** * * *
118561 TATACTCTAGAGATGTGAAGGGAAAAATTTTAGTCGTAATGGCGAATCTTATACCCT
1 TATACCCTAGAGATATGAAGGGAAAAATTGAAGTCGCAATGACGAACCTTATACCCT
118618 GAAGATGAGG
Statistics
Matches: 125, Mismatches: 29, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
97 2 0.02
98 115 0.92
99 8 0.06
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (98 bp):
TATACCCTAGAGATATGAAGGGAAAAATTGAAGTCGCAATGACGAACCTTATACCCTAGAGATAT
AAAGGGAAAGATTGAACCCACAATGGTGAATCT
Found at i:118960 original size:93 final size:93
Alignment explanation
Indices: 118829--119318 Score: 419
Period size: 93 Copynumber: 5.2 Consensus size: 93
118819 GTTATAACAT
* *
118829 CAAATCCTATACCCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGTAGATCTCAACGTCCT
1 CAAATCCTATA-CCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGCAGATCTCAACGTCCC
* * *
118894 TGAGGTTAGAATGGAGTGGACTGAAGCAC
65 TAAGGTTACAATGGAGTGGAGTGAAGCAC
* * *
118923 CAAATCCTATACCCCTGTGTTGTAGTAGGTCAGATTAAAACAATGAGACAGATCTCAACGTCCCT
1 CAAATCCTATACCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGCAGATCTCAACGTCCCT
*
118988 AAGGTTACAGTGGAGTGGAGTGAAGCAC
66 AAGGTTACAATGGAGTGGAGTGAAGCAC
* * * * * * *
119016 TAAATCCAATACCCCTGAGTTGCAATGGGTCAGACTAAAACAATGAGGCAAATGTCAACGTCCCT
1 CAAATCCTATACCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGCAGATCTCAACGTCCCT
* *
119081 AAGGTTACAATAGAGTGGAGTGAAGCAT
66 AAGGTTACAATGGAGTGGAGTGAAGCAC
* * * * * * * * * ** *
119109 TAAATCCTATATCCTTAAAGGTGCAGTGGATCGGA-T-CAA-AATGAGTAACGAATCTCAATGTC
1 CAAATCCTATACCCCT-GAGTTGTAGTGGGTCAGATTAAAACAATGAGGCA-G-ATCTCAACGTC
* * * * * *
119171 CTTGAGGTTACAGTGGAATGGAGAGAAGTTACAA
63 CCTAAGGTTACAATGGAGTGGAGTGAAG---CAC
* * * * * * * **
119205 TATTGAATCCCATACCCCTGAGTTGTAGTAGGTCGGATTAAAATAATGAAGCAGATCTTAATATC
1 CA---AATCCTATACCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGCAGATCTCAACGTC
* * *
119270 CCTGAGGTTATAATGGAATGGAGTGAAGCAC
63 CCTAAGGTTACAATGGAGTGGAGTGAAGCAC
* *
119301 CAGATCCTATATCCCTGA
1 CAAATCCTATACCCCTGA
119319 AGTTACAATG
Statistics
Matches: 318, Mismatches: 66, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
91 7 0.02
92 2 0.01
93 211 0.66
94 24 0.08
96 7 0.02
98 13 0.04
99 45 0.14
100 3 0.01
101 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (93 bp):
CAAATCCTATACCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGCAGATCTCAACGTCCCT
AAGGTTACAATGGAGTGGAGTGAAGCAC
Found at i:119312 original size:192 final size:191
Alignment explanation
Indices: 118773--119678 Score: 776
Period size: 192 Copynumber: 4.7 Consensus size: 191
118763 TACAGTAATT
* * * * *
118773 AGTAACATATATCAATGT-CTCTGAGGTTACAGTGGAATAGAGAGAAGTTATAACATCAAATCCT
1 AGTAACAGATCTCAATGTCCT-TAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCT
* * * * *
118837 ATACCCCCTGAGTTGTAGTGGGTCAGATTAAAACAATGAGGTAGATCTCAACGTCCTTGAGGTTA
65 ATA-CCCCTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTCCCTGAGGTTA
* * * * ** * ** * *
118902 GAATGGAGTGGACTGAAGCACCAAATCCTATACCCCTGTGTTGTAGTAGG-TCAGATTAAAACAA
129 CAATGGAATGGAGTGAAGCACCAAATCCTATATCCCTAAGGTACAGT-GGATCGGA-T-CAA-AA
118966 TG
190 TG
* * * * *
118968 AG--ACAGATCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAG---C-AC-T-AAATCCAA
1 AGTAACAGATCTCAATGTCCTTAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCTA
* * * * * * * * *
119025 TACCCCTGAGTTGCAATGGGTCAGACTAAAACAATGAGGCAAATGTCAACGTCCCTAAGGTTACA
66 TACCCCTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTCCCTGAGGTTACA
* * ** * *
119090 ATAGAGTGGAGTGAAGCATTAAATCCTATATCCTTAAAGGTGCAGTGGATCGGATCAAAATG
131 ATGGAATGGAGTGAAGCACCAAATCCTATATCCCT-AAGGTACAGTGGATCGGATCAAAATG
* * ** *
119152 AGTAAC-GAATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGAGAAGTTACAATATTGAATCCC
1 AGTAACAG-ATCTCAATGTCCTTAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCT
* * * * *
119216 ATACCCCTGAGTTGTAGTAGGTCGGATTAAAATAATGAAGCAGATCTTAATATCCCTGAGGTTAT
65 ATACCCCTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTCCCTGAGGTTAC
* * * * *
119281 AATGGAATGGAGTGAAGCACCAGATCCTATATCCCTGAAGTTACAATGGATTGGATTAAAATG
130 AATGGAATGGAGTGAAGCACCAAATCCTATATCCCT-AAGGTACAGTGGATCGGATCAAAATG
* * * ** * *
119344 AGTAACGGATCTCAATGTCCATAAGGTTACAATGGAATAAAGAGAAGTTACAACATTAAATCTTA
1 AGTAACAGATCTCAATGTCCTTAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCTA
* ** * * *
119409 TTCCTTTGAGTTGTAGTGGGTCGGATTAAAGCAACGAAGCGGATCTCAATGTCCCTGAGGTTACA
66 TACCCCTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTCCCTGAGGTTACA
* ** * * * * **
119474 ATGGAATGGAGTGAAACTTCAAATCCTATCTTCTTAAGGTTACAGTGAAGT-GGATCAAAACA
131 ATGGAATGGAGTGAAGCACCAAATCCTATATCCCTAAGG-TACAGTGGA-TCGGATCAAAATG
* * * * *
119536 AGTAACATATCTCAATGT-CTCTAAGGTTATAGTGGAAGGGAGTGAAGTTACAACACCAAATCCT
1 AGTAACAGATCTCAATGTCCT-TAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCT
** * ** * *
119600 ATACCTATGAAGTTGTGGTGGGTCGGATTAAAACAACAAAAGCATATCTCAATGTTCCTGAGGTT
65 ATACCCCTG-AGTTGTAGTGGGTCGGATTAAAACAA-TGAAGCAGATCTCAATGTCCCTGAGGTT
*
119665 ACAGTGGAATGGAG
128 ACAATGGAATGGAG
119679 AAAAGCTTCA
Statistics
Matches: 573, Mismatches: 120, Indels: 37
0.78 0.16 0.05
Matches are distributed among these distances:
184 6 0.01
185 3 0.01
186 122 0.21
187 19 0.03
188 1 0.00
189 3 0.01
190 1 0.00
191 5 0.01
192 315 0.55
193 59 0.10
194 37 0.06
195 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26
Consensus pattern (191 bp):
AGTAACAGATCTCAATGTCCTTAAGGTTACAGTGGAATGGAGAGAAGTTACAACATCAAATCCTA
TACCCCTGAGTTGTAGTGGGTCGGATTAAAACAATGAAGCAGATCTCAATGTCCCTGAGGTTACA
ATGGAATGGAGTGAAGCACCAAATCCTATATCCCTAAGGTACAGTGGATCGGATCAAAATG
Found at i:119378 original size:93 final size:93
Alignment explanation
Indices: 118973--119488 Score: 278
Period size: 93 Copynumber: 5.4 Consensus size: 93
118963 CAATGAGACA
* * * * * * *
118973 GATCTCAACGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACTAAATCCAATACCCCTG-AGTT
1 GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAAGCAATAGATCCTATATCCCTGAAGTT
* * * * *
119037 GCAATGGGTCAGACTAAAACAATGAGGCAA--
66 GCAGTGGATCGGA-T-TAA-AATGA-GTAACG
* * * * * * * * *
119067 -ATGTCAACGTCCCTAAGGTTACAATAGAGTGGAGTGAAGCATTAAATCCTATATCCTTAAAGGT
1 GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAAGCAATAGATCCTATATCCCTGAAGTT
*
119131 GCAGTGGATCGGATCAAAATGAGTAACG
66 GCAGTGGATCGGATTAAAATGAGTAACG
* * * * * * *
119159 AATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGAGAAGTTACAATATTGAATCCCATACCCCT
1 GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAAG---CAATA--G-ATCCTATATCCCT
* * *
119224 G-AGTTGTAGTAGG-TCGGATTAAAAT-AATGAAGCA
60 GAAGTTGCAGT-GGATCGGATTAAAATGAGT-AA-CG
* * * * **
119258 GATCTTAATATCCCTGAGGTTATAATGGAATGGAGTGAAGCACCAGATCCTATATCCCTGAAGTT
1 GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAAGCAATAGATCCTATATCCCTGAAGTT
* * *
119323 ACAATGGATTGGATTAAAATGAGTAACG
66 GCAGTGGATCGGATTAAAATGAGTAACG
* * * * * * *
119351 GATCTCAATGTCCATAAGGTTACAATGGAATAAAGAGAAGTTACAACATTAAATCTTAT-TCCTT
1 GATCTCAATGTCCCTAAGGTTACAATGGAAT---G-G-AGTGA-AGCAATAGATCCTATATCC-C
* * ***
119415 TG-AGTTGTAGTGGGTCGGATTAAAGCAACG-AAGCG
59 TGAAGTTGCAGTGGATCGGATTAAAATGA-GTAA-CG
*
119450 GATCTCAATGTCCCTGAGGTTACAATGGAATGGAGTGAA
1 GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAA
119489 ACTTCAAATC
Statistics
Matches: 324, Mismatches: 73, Indels: 51
0.72 0.16 0.11
Matches are distributed among these distances:
90 3 0.01
91 5 0.02
92 2 0.01
93 125 0.39
94 37 0.11
95 3 0.01
96 9 0.03
97 3 0.01
98 47 0.15
99 90 0.28
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (93 bp):
GATCTCAATGTCCCTAAGGTTACAATGGAATGGAGTGAAGCAATAGATCCTATATCCCTGAAGTT
GCAGTGGATCGGATTAAAATGAGTAACG
Found at i:121412 original size:15 final size:16
Alignment explanation
Indices: 121392--121469 Score: 58
Period size: 15 Copynumber: 4.8 Consensus size: 16
121382 TAATCCCATA
121392 TATATTTTTATTT-TT
1 TATATTTTTATTTATT
121407 TATATTTATTTTATTTATT
1 TATA--T-TTTTATTTATT
*
121426 TAT-TTTTTATTCATT
1 TATATTTTTATTTATT
121441 TAT-TGTTTTCA-TTATT
1 TATAT-TTTT-ATTTATT
121457 TAT-TTTATTATTT
1 TATATTT-TTATTT
121470 CGTTTATTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
15 21 0.40
16 17 0.32
17 2 0.04
18 8 0.15
19 5 0.09
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (16 bp):
TATATTTTTATTTATT
Found at i:121423 original size:4 final size:4
Alignment explanation
Indices: 121398--121482 Score: 54
Period size: 4 Copynumber: 21.0 Consensus size: 4
121388 CATATATATT
* *
121398 TTTA TTTT TTATA TTTA TTTTA TTTA TTTA TTT- TTTA TTCA TTTA TTGT-
1 TTTA TTTA TT-TA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA
*
121447 TTTCA -TTA TTTA TTT- TATTA TTTCG TTTA -TTA TTTA
1 TTT-A TTTA TTTA TTTA T-TTA TTT-A TTTA TTTA TTTA
121483 CCATGTCATT
Statistics
Matches: 64, Mismatches: 6, Indels: 22
0.70 0.07 0.24
Matches are distributed among these distances:
3 9 0.14
4 43 0.67
5 12 0.19
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:121457 original size:16 final size:14
Alignment explanation
Indices: 121394--121468 Score: 84
Period size: 13 Copynumber: 5.3 Consensus size: 14
121384 ATCCCATATA
121394 TATT-TTTATTTTT
1 TATTATTTATTTTT
*
121407 TA-TATTTATTTTA
1 TATTATTTATTTTT
121420 T-TTATTTATTTTT
1 TATTATTTATTTTT
121433 TATTCATTTATTGTTT
1 TATT-ATTTATT-TTT
121449 TCATTATTTATTTTAT
1 T-ATTATTTATTTT-T
121465 TATT
1 TATT
121469 TCGTTTATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
12 1 0.02
13 22 0.42
14 2 0.04
15 12 0.23
16 13 0.25
17 3 0.06
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.75
Consensus pattern (14 bp):
TATTATTTATTTTT
Found at i:121480 original size:44 final size:41
Alignment explanation
Indices: 121398--121480 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 41
121388 CATATATATT
*
121398 TTTATTTTTTATATTTATTTTATTTATTTATTTTTTATTCA
1 TTTATTTTTTATATTTATTTTATTTATTTATTTATTATTCA
*
121439 TTTATTGTTTTCATTATTTATTTTA-TTATTTCGTTTATTATT
1 TTTATT-TTTT-A-TATTTATTTTATTTATTT-ATTTATTATT
121481 TACCATGTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
41 6 0.17
42 4 0.11
43 7 0.19
44 19 0.53
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (41 bp):
TTTATTTTTTATATTTATTTTATTTATTTATTTATTATTCA
Found at i:121915 original size:110 final size:108
Alignment explanation
Indices: 121792--121992 Score: 312
Period size: 110 Copynumber: 1.8 Consensus size: 108
121782 CAAGGCAATA
* * * *
121792 TTCTTTTATTTTAGGAAACTCGAGAAATTGTGCCCTAACATATTGGGTATGATTTTTTCTTTGAA
1 TTCTTTTATTTTAGGAAACTCAAGAAATTATGCCCTAACATATTGGGTAT--TTTTTTATTCGAA
* *
121857 CCTAAGTAATTTAATATCCTATTTAAAATTGACAAATATTCAACG
64 CCTAAGTAATTGAACATCCTATTTAAAATTGACAAATATTCAACG
* *
121902 TTCTTTTATTTTAGGGAACTCAAGAAATTATGTCCTAACATATTGGGTATTTTTTTATTCGAACC
1 TTCTTTTATTTTAGGAAACTCAAGAAATTATGCCCTAACATATTGGGTATTTTTTTATTCGAACC
121967 TAAGTAATTGAACATCCTATTTAAAA
66 TAAGTAATTGAACATCCTATTTAAAA
121993 ATCGATAAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 37 0.45
110 46 0.55
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (108 bp):
TTCTTTTATTTTAGGAAACTCAAGAAATTATGCCCTAACATATTGGGTATTTTTTTATTCGAACC
TAAGTAATTGAACATCCTATTTAAAATTGACAAATATTCAACG
Found at i:122414 original size:21 final size:23
Alignment explanation
Indices: 122378--122421 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
122368 TCAATTTTCG
*
122378 GTTTTAAAATAAAATTTGAGACA
1 GTTTTAAAATAAAATTCGAGACA
122401 GTTTT-AAA-AAAATTCGAGACA
1 GTTTTAAAATAAAATTCGAGACA
122422 TTATTCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 3 0.15
23 5 0.25
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.32
Consensus pattern (23 bp):
GTTTTAAAATAAAATTCGAGACA
Found at i:124236 original size:8 final size:7
Alignment explanation
Indices: 124220--124285 Score: 52
Period size: 7 Copynumber: 9.7 Consensus size: 7
124210 AATTTCACCC
124220 AAAAAAG
1 AAAAAAG
124227 AAAAATAG
1 AAAAA-AG
*
124235 AAATAA-
1 AAAAAAG
*
124241 AAGAAAG
1 AAAAAAG
124248 -AAAAAG
1 AAAAAAG
124254 AAAACAAG
1 AAAA-AAG
124262 AAAACAAG
1 AAAA-AAG
124270 ---AAAG
1 AAAAAAG
124274 AAAAAAG
1 AAAAAAG
124281 AAAAA
1 AAAAA
124286 GGAGAGGTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
4 3 0.06
5 1 0.02
6 9 0.19
7 18 0.38
8 17 0.35
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:124263 original size:27 final size:27
Alignment explanation
Indices: 124220--124285 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 27
124210 AATTTCACCC
124220 AAAAAAGAAAAATAGAAATAAAAGAAAG
1 AAAAAAGAAAAATAGAAA-AAAAGAAAG
*
124248 -AAAAAGAAAACA-AGAAAACAAGAAAG
1 AAAAAAGAAAA-ATAGAAAAAAAGAAAG
124274 AAAAAAGAAAAA
1 AAAAAAGAAAAA
124286 GGAGAGGTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
26 9 0.26
27 25 0.71
28 1 0.03
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (27 bp):
AAAAAAGAAAAATAGAAAAAAAGAAAG
Found at i:124794 original size:112 final size:112
Alignment explanation
Indices: 124597--124813 Score: 308
Period size: 112 Copynumber: 1.9 Consensus size: 112
124587 AAAATGGGTC
* * ** *
124597 ATTTTTAATATTTTCATTCATGCGAGCTTTGCCTCCAATAAAATTAAAATTTATTCGTCTTGCGA
1 ATTTTTAATATTTTCATTCATGCGAGCTTTGCCTCAAATAAAATTAAAATTTATCCACCTTACGA
*
124662 CCCTATTCAAGCATTTTTGCATCAAAATAACGGTTAGTGGACCAATG
66 CCCTATTCAAGCATTTTTGCATCAAAATAACGATTAGTGGACCAATG
* * *
124709 ATTTTTAATCTTTTCATTCATGCGAGCTTTGCCTCAAATAAAATTCAATTTTATCCACCTTACGA
1 ATTTTTAATATTTTCATTCATGCGAGCTTTGCCTCAAATAAAATTAAAATTTATCCACCTTACGA
* * * **
124774 GCTTGTTCAAGCATTTTTGCATTGAAATAACGATTAGTGG
66 CCCTATTCAAGCATTTTTGCATCAAAATAACGATTAGTGG
124814 TCTAACGATG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 91 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (112 bp):
ATTTTTAATATTTTCATTCATGCGAGCTTTGCCTCAAATAAAATTAAAATTTATCCACCTTACGA
CCCTATTCAAGCATTTTTGCATCAAAATAACGATTAGTGGACCAATG
Found at i:125402 original size:49 final size:48
Alignment explanation
Indices: 125349--125504 Score: 143
Period size: 49 Copynumber: 3.2 Consensus size: 48
125339 CAATGGCGAT
* * *
125349 TTATACCCTAGAGAAATGGAAGGAAAGGTTGAGGCCAAAACAGTGAACC
1 TTATACCCTAGAGATAT-GAAGGAAAGGTTGAAGCCAAAACAGCGAACC
* * * ****
125398 TTATACCTTAGAGATCTCGACGGAAAGGTTGAAGTTGCAAC-GACGAACC
1 TTATACCCTAGAGATAT-GAAGGAAAGGTTGAAGCCAAAACAG-CGAACC
* * * *
125447 TTATACCCTAGAGATATGAAGGGAAAGATTGAACCCATAACAGCGAATC
1 TTATACCCTAGAGATATGAA-GGAAAGGTTGAAGCCAAAACAGCGAACC
125496 TTATACCCT
1 TTATACCCT
125505 GAAGATGAGG
Statistics
Matches: 83, Mismatches: 21, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
48 3 0.04
49 79 0.95
50 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (48 bp):
TTATACCCTAGAGATATGAAGGAAAGGTTGAAGCCAAAACAGCGAACC
Found at i:125912 original size:93 final size:93
Alignment explanation
Indices: 125606--126589 Score: 687
Period size: 93 Copynumber: 10.6 Consensus size: 93
125596 AAAAGGCTAG
* * * * * *
125606 ATTAAAGCAATAAAGCTA-ATCTCAATGTCCCTGAGGTTACATTGGAATGGAGTGAAGCACCAAA
1 ATTAAAACAATGAAGC-AGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAA
* ** *
125670 TCCTATACCCTTG-AGTTATGGTGGGTCGG
65 TCCTATACCC-CGAAGTTACAGTGGGTCGA
* ** *
125699 ATTAAAGCAATGAAGTGGATCTCAACGTCCTTGAGGTTACAGTGGAGTGTAGTGGAGTGAAGCAC
1 ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGT---G-G-AGTGGAGTGAAGCAC
* * **
125764 TAAATCCTATACCCCTG-AGTTGCAGTAGG-AAA
61 TAAATCCTATACCCC-GAAGTTACAGTGGGTCGA
* * ** *
125796 GATTAAAGCAATAAAGC-GAATCTCAACGTCTTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAA
1 -ATTAAAACAATGAAGCAG-ATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAA
*
125860 ATCCTATACCCCGAAGTTACAGTAGGTCGA
64 ATCCTATACCCCGAAGTTACAGTGGGTCGA
* * * * * * *
125890 ATTAATATAATGAAGCAGATCTCAATGCCCCTGAGATTACAGTGGAATGGAGTGAAGTACTAAAT
1 ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAT
* * ** *
125955 CCTATACCTCTAAGTTGTAGTGGGTCGG
66 CCTATACCCCGAAGTTACAGTGGGTCGA
* * * * ** *
125983 ATT-AAACAATGAAGCAAATCTTAACGTCCTTGAGGTTACAATAAAGTGGAGTGAAGCACCAAAT
1 ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAT
* * * *
126047 CTTATACCCCTAAGTTACAATAGGTC-A
66 CCTATACCCCGAAGTTACAGTGGGTCGA
* * * * ** * *
126074 GATTAATACAATAAAGCGGATCTCAATGTCTATGAGGTTACAGCGG-GATGGAGTGAAGCATTAA
1 -ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAG-TGGAGTGAAGCACTAA
** * * *
126138 ATCCTATACCCCTG-AGTTGTAGTAGGTAGG
64 ATCCTATACCCC-GAAGTTACAGTGGGTCGA
* * * * * * * *
126168 ATCAAAATAATGAAGCGGATCCCAATGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCACCAAAT
1 ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAT
* * *
126233 CTTATACCCCTAAGTTACAGTGGGTCGG
66 CCTATACCCCGAAGTTACAGTGGGTCGA
* ** * * * *
126261 ATTAAAACAATAAAGCAGATCTCAATATCCCTAAGGTTATAGTGAAGTGGAGTGAAGCACAAAAT
1 ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAT
** * * *
126326 CCTATATACCTAAGTTGCAATGGGTC-A
66 CCTATACCCCGAAGTTACAGTGGGTCGA
* * * * *
126353 GATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTAGAGTGAAGCACCAAA
1 -ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAA
* ** * * *
126418 TCCTATATCACTAAATTTACAGTGGATTGA
65 TCCTATA-CCCCGAAGTTACAGTGGGTCGA
* ** * * * *
126448 ATCAAAATGA-GTAA-C-GAATCTCAATGTCCCTGAGGTTACAATGGAATGGAGAGAAG---T--
1 ATTAAAACAATG-AAGCAG-ATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAA
* * *
126505 -TACAATACCCCTG-AGTTGCAGTGGGTC-A
64 ATCCTATACCCC-GAAGTTACAGTGGGTCGA
* * *
126533 GATTAAAATAATGAAGCAGATCTCAACGTCCTTGAGGTTATAGTGGAGTGGAGTGAA
1 -ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAA
126590 ACTTCAAATT
Statistics
Matches: 701, Mismatches: 161, Indels: 64
0.76 0.17 0.07
Matches are distributed among these distances:
85 1 0.00
86 22 0.03
87 39 0.06
88 1 0.00
92 73 0.10
93 460 0.66
94 26 0.04
95 2 0.00
96 1 0.00
97 2 0.00
98 74 0.11
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (93 bp):
ATTAAAACAATGAAGCAGATCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACTAAAT
CCTATACCCCGAAGTTACAGTGGGTCGA
Found at i:126250 original size:186 final size:186
Alignment explanation
Indices: 125605--126589 Score: 850
Period size: 186 Copynumber: 5.3 Consensus size: 186
125595 TAAAAGGCTA
* * * * * *
125605 GATTAAAGCAATAAAGCTAATCTCAATGTCCCTGAGGTTACATTGGAATGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
* * ** * * ** * *
125670 TCCTATACCCTTGAGTTATGGTGGGTCGGATTAA-AGCAATGAAGTGGATCTCAACGTCCTTGAG
66 TCCTATACCCCTAAGTTACAGTAGGTCGGATTAATA-CAATAAAGCAGATCTCAATGTCCCTGAG
* * *
125734 GTTACAGTGGAGTGTAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTGCAGTAGGAAA
130 GTTACAG-GGA----AGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGTAG
* * * ** * **
125796 GATTAAAGCAATAAAGCGAATCTCAACGTCTTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
* * * * * *
125861 TCCTATACCCCGAAGTTACAGTAGGTCGAATTAATATAATGAAGCAGATCTCAATGCCCCTGAGA
66 TCCTATACCCCTAAGTTACAGTAGGTCGGATTAATACAATAAAGCAGATCTCAATGTCCCTGAGG
* * * * *
125926 TTACAGTGGAA-TGGAGTGAAGTACTAAATCCTATACCTCTAAGTTGTAGTGGGTCG
131 TTACAG-GGAAGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGTAG
* * **
125982 GATT-AAACAATGAAGCAAATCTTAACGTCCTTGAGGTTACAATAAAGTGGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
* * * * **
126046 TCTTATACCCCTAAGTTACAATAGGTCAGATTAATACAATAAAGCGGATCTCAATGTCTATGAGG
66 TCCTATACCCCTAAGTTACAGTAGGTCGGATTAATACAATAAAGCAGATCTCAATGTCCCTGAGG
* * * *
126111 TTACAGCGGGA-TGGAGTGAAGCATTAAATCCTATACCCCTGAGTTGTAGTAGGTAG
131 TTACAG-GGAAGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGTAG
* * ** * * * * *
126167 GATCAAAATAATGAAGCGGATCCCAATGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCACCAAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
* * * * *
126232 TCTTATACCCCTAAGTTACAGTGGGTCGGATTAAAACAATAAAGCAGATCTCAATATCCCTAAGG
66 TCCTATACCCCTAAGTTACAGTAGGTCGGATTAATACAATAAAGCAGATCTCAATGTCCCTGAGG
* * * ** * *
126297 TTATAGTGAAGTGGAGTGAAGCACAAAATCCTATATACCTAAGTTGCAATGGGTCA-
131 TTACAGGGAAGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGT-AG
* * * *
126353 GATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTAGAGTGAAGCACCAAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
* * * * * * * * * *
126418 TCCTATATCACTAAATTTACAGT-GGATTGAATCAAAATGAGTAACG-A-ATCTCAATGTCCCTG
66 TCCTATACCCCT-AAGTTACAGTAGG-TCGGATTAATA-CAATAAAGCAGATCTCAATGTCCCTG
* * * * * *
126480 AGGTTACAATGGAA-TGGAGAGAAG---T---TACAATACCCCTGAGTTGCAGTGGGTCA-
128 AGGTTAC-AGGGAAGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGT-AG
* * * * *
126533 GATTAAAATAATGAAGCAGATCTCAACGTCCTTGAGGTTATAGTGGAGTGGAGTGAA
1 GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAA
126590 ACTTCAAATT
Statistics
Matches: 657, Mismatches: 129, Indels: 27
0.81 0.16 0.03
Matches are distributed among these distances:
180 74 0.11
185 156 0.24
186 281 0.43
187 24 0.04
188 5 0.01
191 116 0.18
192 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (186 bp):
GATTAAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGGAGTGGAGTGAAGCACCAAA
TCCTATACCCCTAAGTTACAGTAGGTCGGATTAATACAATAAAGCAGATCTCAATGTCCCTGAGG
TTACAGGGAAGTGGAGTGAAGCACTAAATCCTATACCCCTAAGTTGCAGTAGGTAG
Found at i:126328 original size:371 final size:376
Alignment explanation
Indices: 125604--126424 Score: 987
Period size: 371 Copynumber: 2.2 Consensus size: 376
125594 ATAAAAGGCT
* * * *
125604 AGATTAAAGCAATAAAGCTAATCTCAATGTCCCTGAGGTTACATTGGAA-TGGAGTGAAGCACCA
1 AGATTAAA-CAATGAAGCAAATCTCAACGTCCCTGAGGTTACAAT-GAAGTGGAGTGAAGCACCA
* * *** * * * *
125668 AATCCTATACCCTTGAGTTATGGTGGGTCGGATTAAAGCAATGAAGTGGATCTCAACGTCCTTGA
64 AATCCTATACCCCTAAGTTACAATAGGTCAGATTAAAGCAATAAAGCGGATCTCAACGTCCTTGA
*
125733 GGTTACAGTGGAGTGTAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTGCAGTAGGAAAGA
129 GGTTACAGTCGAGTGTAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTGCAGTAGGAAAGA
* * * ** * *
125798 TTAAAGCAATAAAGCGAATCTCAACGTCTTTGAGGTTACAGTGGAGTGGAGTGAAGCAATAAATC
194 TCAAAACAATAAAGCGAATCCCAACGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCAACAAATC
* * * * *
125863 CTATACCCCGAAGTTACAGTAGGTCGAATTAATATAATGAAGCAGATCTCAATGCCCCTGAGATT
259 CTATACCCCGAAGTTACAGTAGGTCGAATTAAAACAATAAAGCAGATCTCAATACCCCTAAGATT
* * * * *
125928 ACAGTGGAATGGAGTGAAGTACTAAATCCTATA-CCTCTAAGTTGTAGTGGGTC
324 ACAGTGGAATGGAGTGAAGCACAAAATCCTATATAC-CTAAGTTGCAATGGGTC
* * * *
125981 GGATTAAACAATGAAGCAAATCTTAACGTCCTTGAGGTTACAATAAAGTGGAGTGAAGCACCAAA
1 AGATTAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGAAGTGGAGTGAAGCACCAAA
* *
126046 TCTTATACCCCTAAGTTACAATAGGTCAGATTAATA-CAATAAAGCGGATCTCAATGT-CTATGA
66 TCCTATACCCCTAAGTTACAATAGGTCAGATTAA-AGCAATAAAGCGGATCTCAACGTCCT-TGA
* * * *
126109 GGTTACAG-CG-G-G-A-TGGAGTGAAGCATTAAATCCTATACCCCTGAGTTGTAGTAGGTAGGA
129 GGTTACAGTCGAGTGTAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTGCAGTAGGAAAGA
* * * * *
126169 TCAAAATAATGAAGCGGATCCCAATGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCACCAAATC
194 TCAAAACAATAAAGCGAATCCCAACGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCAACAAATC
* * * * * *
126234 TTATACCCCTAAGTTACAGTGGGTCGGATTAAAACAATAAAGCAGATCTCAATATCCCTAAGGTT
259 CTATACCCCGAAGTTACAGTAGGTCGAATTAAAACAATAAAGCAGATCTCAATACCCCTAAGATT
*
126299 ATAGT-GAAGTGGAGTGAAGCACAAAATCCTATATACCTAAGTTGCAATGGGTC
324 ACAGTGGAA-TGGAGTGAAGCACAAAATCCTATATACCTAAGTTGCAATGGGTC
* * * * *
126352 AGATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTAGAGTGAAGCACCAA
1 AGATT-AAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGAAGTGGAGTGAAGCACCAA
126417 ATCCTATA
65 ATCCTATA
126425 TCACTAAATT
Statistics
Matches: 375, Mismatches: 63, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
370 3 0.01
371 195 0.52
372 60 0.16
373 1 0.00
374 1 0.00
375 5 0.01
376 102 0.27
377 8 0.02
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (376 bp):
AGATTAAACAATGAAGCAAATCTCAACGTCCCTGAGGTTACAATGAAGTGGAGTGAAGCACCAAA
TCCTATACCCCTAAGTTACAATAGGTCAGATTAAAGCAATAAAGCGGATCTCAACGTCCTTGAGG
TTACAGTCGAGTGTAGTGGAGTGAAGCACTAAATCCTATACCCCTGAGTTGCAGTAGGAAAGATC
AAAACAATAAAGCGAATCCCAACGTCCATGAGGTTACAGTGGAGTGGAGTAAAGCAACAAATCCT
ATACCCCGAAGTTACAGTAGGTCGAATTAAAACAATAAAGCAGATCTCAATACCCCTAAGATTAC
AGTGGAATGGAGTGAAGCACAAAATCCTATATACCTAAGTTGCAATGGGTC
Found at i:126656 original size:180 final size:180
Alignment explanation
Indices: 126338--126689 Score: 449
Period size: 180 Copynumber: 2.0 Consensus size: 180
126328 TATATACCTA
126338 AGTTGCAATGGGTCAGATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTA
1 AGTTGCAATGGGTCAGATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTA
* * * * *
126403 GAGTGAAGCACCAAATCCTATATCACTAAATTTACAGTGGATTGAATCAAAATGAGTAACGAATC
66 GAGTGAAACACCAAATCCTATATCACTAAAGTTACAGTGAAGTGAATCAAAATCAGTAACGAATC
*
126468 TCAATGTCCCTGAGGTTACAATGGAATGGAGAGAAGTTACAATACCCCTG
131 TAAATGTCCCTGAGGTTACAATGGAATGGAGAGAAGTTACAATACCCCTG
* ** * * *
126518 AGTTGCAGTGGGTCAGATTAAAATAATGAAGCAGATCTCAACGTCCTTGAGGTTATAGTGGAGTG
1 AGTTGCAATGGGTCAGATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTA
** * * * * * *
126583 GAGTGAAACTTCAAATTCTGTTTTC-CTGAGGTTACAGTGAAGTGGATCAAAA-CATGTAAC-AG
66 GAGTGAAACACCAAATCCT-ATATCACTAAAGTTACAGTGAAGTGAATCAAAATCA-GTAACGA-
* * *
126645 ATCTAAATGTCCTTGAGGTTACAGTGGAATGGAGTGAAGTTACAA
128 ATCTAAATGTCCCTGAGGTTACAATGGAATGGAGAGAAGTTACAA
126690 CACCAAATCC
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
179 2 0.01
180 141 0.97
181 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (180 bp):
AGTTGCAATGGGTCAGATTAAAATAATGAAGCAGATCTCAACGTCCCCGAGGTTACAATGGAGTA
GAGTGAAACACCAAATCCTATATCACTAAAGTTACAGTGAAGTGAATCAAAATCAGTAACGAATC
TAAATGTCCCTGAGGTTACAATGGAATGGAGAGAAGTTACAATACCCCTG
Found at i:127300 original size:21 final size:22
Alignment explanation
Indices: 127274--127320 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
127264 CAAAAGAAAG
*
127274 AAAGACACAGAGACAA-AAG-CA
1 AAAGACAAAGAG-CAACAAGACA
127295 AAAGACAAAGAGCAACAAGACA
1 AAAGACAAAGAGCAACAAGACA
127317 AAAG
1 AAAG
127321 TAGGAAGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 3 0.13
21 14 0.61
22 6 0.26
ACGTcount: A:0.64, C:0.17, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAGACAAAGAGCAACAAGACA
Found at i:127484 original size:16 final size:16
Alignment explanation
Indices: 127446--127489 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
127436 TAGTTCACTG
127446 TTTTAGTATATTTTTTA
1 TTTTA-TATATTTTTTA
**
127463 -CATATATATTTTTTA
1 TTTTATATATTTTTTA
127478 TTTTATATATTT
1 TTTTATATATTT
127490 CAAAAACAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (16 bp):
TTTTATATATTTTTTA
Found at i:139259 original size:19 final size:19
Alignment explanation
Indices: 139235--139271 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
139225 AATCACTATA
*
139235 ACAAATCTAATTTAATATT
1 ACAAATCTAATCTAATATT
139254 ACAAATCTAATCTAATAT
1 ACAAATCTAATCTAATAT
139272 AATACTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (19 bp):
ACAAATCTAATCTAATATT
Found at i:141877 original size:16 final size:16
Alignment explanation
Indices: 141844--141890 Score: 78
Period size: 16 Copynumber: 2.9 Consensus size: 16
141834 AGTTTGAATC
141844 CTTT-ATAAAGTTTGAG
1 CTTTGATAAAGTTT-AG
141860 CTTTGATAAAGTTTAG
1 CTTTGATAAAGTTTAG
141876 CTTTGATAAAGTTTA
1 CTTTGATAAAGTTTA
141891 TGTCTATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 21 0.70
17 9 0.30
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (16 bp):
CTTTGATAAAGTTTAG
Found at i:145527 original size:20 final size:20
Alignment explanation
Indices: 145502--145545 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
145492 TTCATATGTT
145502 GCCCCAGCTATGGTGTAATA
1 GCCCCAGCTATGGTGTAATA
145522 GCCCCAGCTATGGTGTAATA
1 GCCCCAGCTATGGTGTAATA
145542 GCCC
1 GCCC
145546 TTTTTTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (20 bp):
GCCCCAGCTATGGTGTAATA
Found at i:147118 original size:32 final size:32
Alignment explanation
Indices: 147064--147185 Score: 181
Period size: 32 Copynumber: 3.8 Consensus size: 32
147054 GAGATGTTAT
* *
147064 AGATTGTTATCTCTTACGAGCATACTGATTAC
1 AGATTGATAGCTCTTACGAGCATACTGATTAC
* * *
147096 AAATTGATAGCTCTTACAAGCATATTGATTAC
1 AGATTGATAGCTCTTACGAGCATACTGATTAC
*
147128 AGATTGATAGCTCTTATGAGCATACTGATTAC
1 AGATTGATAGCTCTTACGAGCATACTGATTAC
*
147160 AGATTGATGGCTCTTACGAGCATACT
1 AGATTGATAGCTCTTACGAGCATACT
147186 AGATACTAAC
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 79 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (32 bp):
AGATTGATAGCTCTTACGAGCATACTGATTAC
Found at i:149724 original size:36 final size:37
Alignment explanation
Indices: 149675--149749 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 37
149665 CCTCGATGAT
* *
149675 TGATGCTCAATTTTTCTCCCTGTTGACCCAAAGGTCA
1 TGATGCTCAATTTTACTCCATGTTGACCCAAAGGTCA
* *
149712 TGATGTTC-ATTTTACTCCATGTTGACCCAAAGTTCA
1 TGATGCTCAATTTTACTCCATGTTGACCCAAAGGTCA
149748 TG
1 TG
149750 CCTATTACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
36 27 0.79
37 7 0.21
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (37 bp):
TGATGCTCAATTTTACTCCATGTTGACCCAAAGGTCA
Found at i:156760 original size:14 final size:14
Alignment explanation
Indices: 156741--156768 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
156731 ATAGTATTGT
156741 CAATGCATTGGGGA
1 CAATGCATTGGGGA
156755 CAATGCATTGGGGA
1 CAATGCATTGGGGA
156769 TATTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.21
Consensus pattern (14 bp):
CAATGCATTGGGGA
Found at i:157284 original size:21 final size:24
Alignment explanation
Indices: 157260--157308 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
157250 CGTAAAAAGG
*
157260 AAAATGAGATAA-AAAAA-AA-AA
1 AAAATGAGAGAAGAAAAAGAAGAA
*
157281 AAAANGAGAGAAGAAAAAGAAGAA
1 AAAATGAGAGAAGAAAAAGAAGAA
157305 AAAA
1 AAAA
157309 AATTTTGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 10 0.43
22 5 0.22
23 2 0.09
24 6 0.26
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.04
Consensus pattern (24 bp):
AAAATGAGAGAAGAAAAAGAAGAA
Found at i:165348 original size:26 final size:26
Alignment explanation
Indices: 165332--165400 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
165322 GCACTACACG
*
165332 TGCTAAGTAACGGAGAGCACAATACA
1 TGCTAAATAACGGAGAGCACAATACA
*
165358 TGCTAAATAACGAAGAGCACAATACA
1 TGCTAAATAACGGAGAGCACAATACA
165384 TGCTAAATAACGGAGAG
1 TGCTAAATAACGGAGAG
165401 AGCGCTAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (26 bp):
TGCTAAATAACGGAGAGCACAATACA
Found at i:170266 original size:50 final size:50
Alignment explanation
Indices: 170171--170501 Score: 392
Period size: 50 Copynumber: 6.5 Consensus size: 50
170161 ATAATTATGT
* * * * *
170171 GTTTACGCTCGTCAGCTTATTTATACGTTTACGCTCACTAGCTTGCACAC
1 GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
* * * * *
170221 GTTTATGCTCGTCAGATTAATTATGCGCTTATGCTTGCCAACTTGCACAC
1 GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
* * *
170271 GTTTACTCTCGTCAACTTAATTATGCGTTTACGCTCACCAACTTGCACAC
1 GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
* * *
170321 GTTTACGCTTGTCATCTTAATTATGCATTTACGCTCGCCAACTTGCACAC
1 GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
* * *
170371 GTTTATGCTCGTCAGCTTAATTATGCGTTTATGCTCGCCAGCTTGCACAC
1 GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
* * * * *
170421 ATTTACACTCGTTAGCTTAATTATGCGTTTAAGCTTACGCTCGCCAGCTTGCACAT
1 GTTTACGCTCGTCAGCTTAATTATGCG--T----TTACGCTCGCCAACTTGCACAC
170477 GTTTACGCTCGTCAGCTTAATTATG
1 GTTTACGCTCGTCAGCTTAATTATG
170502 TACTTATTCA
Statistics
Matches: 237, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
50 194 0.82
52 1 0.00
56 42 0.18
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.36
Consensus pattern (50 bp):
GTTTACGCTCGTCAGCTTAATTATGCGTTTACGCTCGCCAACTTGCACAC
Found at i:170380 original size:24 final size:24
Alignment explanation
Indices: 170348--170425 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
170338 TAATTATGCA
* *
170348 TTTACGCTCGCCAACTTGCACACG
1 TTTATGCTCGCCAGCTTGCACACG
* * *
170372 TTTATGCTCGTCAGCTT-AATTATGCG
1 TTTATGCTCGCCAGCTTGCA-CA--CG
*
170398 TTTATGCTCGCCAGCTTGCACACA
1 TTTATGCTCGCCAGCTTGCACACG
170422 TTTA
1 TTTA
170426 CACTCGTTAG
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
23 1 0.02
24 20 0.49
26 19 0.46
27 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (24 bp):
TTTATGCTCGCCAGCTTGCACACG
Found at i:170442 original size:150 final size:152
Alignment explanation
Indices: 170171--170501 Score: 441
Period size: 150 Copynumber: 2.2 Consensus size: 152
170161 ATAATTATGT
* * * * *
170171 GTTTACGCTCGTCAGCTTATTTATACGTTTACGCTCACTAGCTTGCACACGTTTATGCTCGTCAG
1 GTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCACCAACTTGCACACGTTTATGCTCGTCAG
* * *
170236 ATTAATTATGCGCTTATGCTTGCCAACTTGCACACGTTTACTCTCGTCAACTTAATTATGCG-T-
66 ATTAATTATGCGCTTATGCTCGCCAACTTGCACACATTTACACTCGTCAACTTAATTATGCGTTA
170299 TTACGCTCACCAACTTGCACAC
131 TTACGCTCACCAACTTGCACAC
* * *
170321 GTTTACGCTTGTCATCTTAATTATGCATTTACGCTCGCCAACTTGCACACGTTTATGCTCGTCAG
1 GTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCACCAACTTGCACACGTTTATGCTCGTCAG
* * * * *
170386 CTTAATTATGCGTTTATGCTCGCCAGCTTGCACACATTTACACTCGTTAGCTTAATTATGCGTTT
66 ATTAATTATGCGCTTATGCTCGCCAACTTGCACACATTTACACTCGTCAACTTAATTATGCG-TT
* * *
170451 AAGCTTACGCTCGCCAGCTTGCACAT
130 -A--TTACGCTCACCAACTTGCACAC
170477 GTTTACGCTCGTCAGCTTAATTATG
1 GTTTACGCTCGTCAGCTTAATTATG
170502 TACTTATTCA
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
150 111 0.72
152 1 0.01
156 42 0.27
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.36
Consensus pattern (152 bp):
GTTTACGCTCGTCAGCTTAATTATGCATTTACGCTCACCAACTTGCACACGTTTATGCTCGTCAG
ATTAATTATGCGCTTATGCTCGCCAACTTGCACACATTTACACTCGTCAACTTAATTATGCGTTA
TTACGCTCACCAACTTGCACAC
Found at i:174820 original size:21 final size:21
Alignment explanation
Indices: 174788--174827 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
174778 AAAAATAATA
174788 TTTTTTATTATTTT-AAGTAT
1 TTTTTTATTATTTTCAAGTAT
174808 TTTTTTATATATTTTCAAGT
1 TTTTTTAT-TATTTTCAAGT
174828 GTATTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 6 0.33
22 4 0.22
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTTTATTATTTTCAAGTAT
Found at i:174834 original size:22 final size:20
Alignment explanation
Indices: 174789--174835 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
174779 AAAATAATAT
*
174789 TTTTTATTATTTTAAGTATT
1 TTTTTATTATTTTAAGTATA
*
174809 TTTTTATATATTTTCAAGTGTA
1 TTTTTAT-TATTTT-AAGTATA
174831 TTTTT
1 TTTTT
174836 GAATTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 6 0.26
22 10 0.43
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.68
Consensus pattern (20 bp):
TTTTTATTATTTTAAGTATA
Found at i:179226 original size:24 final size:24
Alignment explanation
Indices: 179198--179260 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
179188 AAAAATAATC
*
179198 TTTCAGTTAAACTCTGTTTATTTA
1 TTTCAGTTAAACTCTATTTATTTA
* *
179222 TTTCAATTAAACTCTATTTATTTG
1 TTTCAGTTAAACTCTATTTATTTA
* *
179246 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
179261 TATTAGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTATTTA
Found at i:181213 original size:24 final size:24
Alignment explanation
Indices: 181162--181216 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
181152 TCTTTTAGTT
* *
181162 AAACTCTGTTTATTTGTTTCAATT
1 AAACTCTATTTATTTGTTTCAATC
* *
181186 AAACTCTATTTATTTGTTTGAGTC
1 AAACTCTATTTATTTGTTTCAATC
181210 AAACTCT
1 AAACTCT
181217 TATTAGTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (24 bp):
AAACTCTATTTATTTGTTTCAATC
Found at i:183421 original size:22 final size:21
Alignment explanation
Indices: 183375--183421 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
183365 AAATGATAGT
* *
183375 AAAATAGTGAAAAACAACAAG
1 AAAATAGTAAAAAACAACAAA
*
183396 AAAATAGTAACAAAACAATAAA
1 AAAATAGTAA-AAAACAACAAA
183418 AAAA
1 AAAA
183422 AAGCAAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.11
Consensus pattern (21 bp):
AAAATAGTAAAAAACAACAAA
Found at i:188851 original size:23 final size:23
Alignment explanation
Indices: 188825--188870 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
188815 AACATAGAGA
188825 TATGATTGTTACTTCACTTGATC
1 TATGATTGTTACTTCACTTGATC
188848 TATGATTGTTACTTCACTTGATC
1 TATGATTGTTACTTCACTTGATC
188871 CTTTACTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (23 bp):
TATGATTGTTACTTCACTTGATC
Found at i:189232 original size:15 final size:15
Alignment explanation
Indices: 189208--189251 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
189198 TAACTTTATC
*
189208 TTTAGCTTAGATTAA
1 TTTAGTTTAGATTAA
189223 TTTAGTTTAGATTAA
1 TTTAGTTTAGATTAA
*
189238 --TACTTTAGATTAA
1 TTTAGTTTAGATTAA
189251 T
1 T
189252 ATCCTTCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 12 0.46
15 14 0.54
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (15 bp):
TTTAGTTTAGATTAA
Found at i:189246 original size:13 final size:13
Alignment explanation
Indices: 189214--189252 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
189204 TATCTTTAGC
*
189214 TTAGATTAATTTAGT
1 TTAGATTAA--TACT
189229 TTAGATTAATACT
1 TTAGATTAATACT
189242 TTAGATTAATA
1 TTAGATTAATA
189253 TCCTTCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (13 bp):
TTAGATTAATACT
Found at i:193936 original size:41 final size:41
Alignment explanation
Indices: 193879--194099 Score: 291
Period size: 41 Copynumber: 5.4 Consensus size: 41
193869 AATTACTTGA
193879 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
** *
193920 TATATTAAAAAAAGACTCGTGACTCAAAATGAGCATGAAAT
1 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
193961 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
* * * ****
194002 TATATTAAATGAAGACTCATGTCTCGGGGTGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
* * **
194043 TATATTAAAGGAAGACTTGTGTCTCGGGAA-GAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTC-AAAATGAGCATGAGAT
194084 TATATTTAAAGGAAGA
1 TATA-TTAAAGGAAGA
194100 TCTACGACTC
Statistics
Matches: 160, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 147 0.92
42 13 0.08
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (41 bp):
TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
Found at i:198963 original size:41 final size:41
Alignment explanation
Indices: 198635--198939 Score: 461
Period size: 41 Copynumber: 7.4 Consensus size: 41
198625 AATTAATTGA
* *
198635 TATATTAAAGGAAGACTTGTGATGTC-AAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGA-CTCGAAATGAGCATGAGAT
*
198676 TATATTAAAGGAAGACTCGTGACTTGAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
198717 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
*
198758 TATATTAAAGGAAGACTCGTGACTCCAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
198799 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
* ** ***
198840 TATATTAAAGGAAGACTCATGTTTCGGGGTGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
* *
198881 TATATTAAAGGAAGACTCGTGTCTCGGGAA-GAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTC-GAAATGAGCATGAGAT
198922 TATATTTAAAGGAAGACT
1 TATA-TTAAAGGAAGACT
198940 TATGACTAGG
Statistics
Matches: 245, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
40 1 0.00
41 229 0.93
42 15 0.06
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (41 bp):
TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
Found at i:203607 original size:41 final size:41
Alignment explanation
Indices: 203550--203822 Score: 406
Period size: 41 Copynumber: 6.6 Consensus size: 41
203540 AATTACTTGA
203550 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
203591 TATATTAAAGGAAGACTCGTGACTCCG-AATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACT-CGAAATGAGCATGAGAT
*
203632 TATATTAAAGGAAGACTCGTGACTCAAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
203673 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
* * * **
203714 TATATTAAAGGGAGACTCATGTCTCGAGGTGAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
* * *
203755 TATATTAAATGAAGACTCGTGTCTCGGGAA-GAGCATGAGAT
1 TATATTAAAGGAAGACTCGTGACTC-GAAATGAGCATGAGAT
**
203796 TATATTTAAAGGAAGACTTATGACTCG
1 TATA-TTAAAGGAAGACTCGTGACTCG
203823 GTAAAGCATA
Statistics
Matches: 211, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
40 1 0.00
41 190 0.90
42 20 0.09
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (41 bp):
TATATTAAAGGAAGACTCGTGACTCGAAATGAGCATGAGAT
Found at i:207666 original size:16 final size:16
Alignment explanation
Indices: 207645--207684 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
207635 ATACAAGACA
*
207645 CCTTTAGGGTTGTCTC
1 CCTTTAGGGATGTCTC
207661 CCTTTAGGGATGTCTC
1 CCTTTAGGGATGTCTC
207677 CCTTTAGG
1 CCTTTAGG
207685 TTAGTATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.25, G:0.25, T:0.40
Consensus pattern (16 bp):
CCTTTAGGGATGTCTC
Found at i:208094 original size:9 final size:9
Alignment explanation
Indices: 208052--208094 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
208042 AAAGTTTTTC
208052 TTTTATTTA
1 TTTTATTTA
208061 TTTTTATTTTA
1 -TTTTA-TTTA
*
208072 TGTTATTTA
1 TTTTATTTA
*
208081 CTTTATTTA
1 TTTTATTTA
208090 TTTTA
1 TTTTA
208095 AAAATTGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 15 0.54
10 9 0.32
11 4 0.14
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTTATTTA
Found at i:208666 original size:21 final size:21
Alignment explanation
Indices: 208640--208690 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
208630 TTGCTACACC
208640 TGTGCACCAAACACCAAGTCA
1 TGTGCACCAAACACCAAGTCA
208661 TGTGCACCAAACACCAAGTCA
1 TGTGCACCAAACACCAAGTCA
*
208682 TGCGCACCA
1 TGTGCACCA
208691 CACGCCTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14
Consensus pattern (21 bp):
TGTGCACCAAACACCAAGTCA
Found at i:208858 original size:16 final size:16
Alignment explanation
Indices: 208839--208876 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
208829 TTATTTTTAA
*
208839 AATTT-TTAATTTGTTT
1 AATTTATTAACTT-TTT
208855 AATTTATTAACTTTTT
1 AATTTATTAACTTTTT
208871 AATTTA
1 AATTTA
208877 ATTTAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
AATTTATTAACTTTTT
Found at i:208897 original size:26 final size:25
Alignment explanation
Indices: 208841--208890 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
208831 ATTTTTAAAA
* *
208841 TTTTTAATTTGTTTAATTTATTAAC
1 TTTTTAATTTATTTAAATTATTAAC
*
208866 TTTTTAATTTAATTTAAATTGTTAA
1 TTTTTAATTT-ATTTAAATTATTAA
208891 TATTTTATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTTTAATTTATTTAAATTATTAAC
Found at i:209804 original size:18 final size:18
Alignment explanation
Indices: 209781--209820 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
209771 GCTGAAGCAA
*
209781 AAGAAGAAGATCCTGAAG
1 AAGAAGAAGATCCTAAAG
209799 AAGAAGAAGATCCTAAAG
1 AAGAAGAAGATCCTAAAG
209817 AAGA
1 AAGA
209821 TCCTGTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.10, G:0.25, T:0.10
Consensus pattern (18 bp):
AAGAAGAAGATCCTAAAG
Found at i:210727 original size:21 final size:21
Alignment explanation
Indices: 210702--210746 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
210692 GATACCTGAT
*
210702 AAAAGGTATTGATACT-TTTTG
1 AAAAGGTATCGATA-TGTTTTG
210723 AAAAGGTATCGATATGTTTTG
1 AAAAGGTATCGATATGTTTTG
210744 AAA
1 AAA
210747 TTGTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (21 bp):
AAAAGGTATCGATATGTTTTG
Found at i:216163 original size:21 final size:20
Alignment explanation
Indices: 216133--216202 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
216123 TTTGCCTAGT
*
216133 AGGCTTTGTGCCGGTGTATTC
1 AGGCTATGTGCC-GTGTATTC
216154 AGGCTATGTGCC---TATT-
1 AGGCTATGTGCCGTGTATTC
*
216170 AGGCTTTGTGCCGATGTATTC
1 AGGCTATGTGCCG-TGTATTC
216191 AGGCTATGTGCC
1 AGGCTATGTGCC
216203 AAGTAGGCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
16 11 0.27
17 4 0.10
20 4 0.10
21 22 0.54
ACGTcount: A:0.14, C:0.20, G:0.30, T:0.36
Consensus pattern (20 bp):
AGGCTATGTGCCGTGTATTC
Found at i:216166 original size:37 final size:37
Alignment explanation
Indices: 216112--216370 Score: 349
Period size: 37 Copynumber: 7.0 Consensus size: 37
216102 TGCATCTAAA
* *
216112 TATTCAAGCTATTTGCCTAGTAGGCTTTGTGCCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
* *
216149 TATTCAGGCTATGTGCCTATTAGGCTTTGTGCCGATG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
* * * * *
216186 TATTCAGGCTATGTGCCAAGTAGGCCTTATACCAGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
* *
216223 TATTCAAGCTATGTGCCTAGTAGGCTTCGTGCCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
*
216260 TATTCAGGCTATGTGCCTAGTAGGCTTCGTGCCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
* *
216297 TTTTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGATG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
* * *
216334 TATTC-GAGCTATGTGCCTAGAAGGCTTTATGTCGGTG
1 TATTCAG-GCTATGTGCCTAGTAGGCTTTGTGCCGGTG
216371 ATCCAAGAAC
Statistics
Matches: 194, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
36 1 0.01
37 193 0.99
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.35
Consensus pattern (37 bp):
TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCCGGTG
Found at i:216179 original size:16 final size:16
Alignment explanation
Indices: 216125--216181 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 16
216115 TCAAGCTATT
*
216125 TGCCTAGTAGGCTTTG
1 TGCCTATTAGGCTTTG
*
216141 TGCCGGTGTATTCAGGCTATG
1 TGCC----TATT-AGGCTTTG
216162 TGCCTATTAGGCTTTG
1 TGCCTATTAGGCTTTG
216178 TGCC
1 TGCC
216182 GATGTATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
16 15 0.45
17 4 0.12
20 3 0.09
21 11 0.33
ACGTcount: A:0.12, C:0.21, G:0.30, T:0.37
Consensus pattern (16 bp):
TGCCTATTAGGCTTTG
Found at i:216275 original size:21 final size:21
Alignment explanation
Indices: 216251--216313 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
216241 AGTAGGCTTC
216251 GTGCCGGTGTATTCAGGCTAT
1 GTGCCGGTGTATTCAGGCTAT
*
216272 GTGCC----TAGT-AGGCT-T
1 GTGCCGGTGTATTCAGGCTAT
*
216287 CGTGCCGGTGTTTTCAGGCTAT
1 -GTGCCGGTGTATTCAGGCTAT
216309 GTGCC
1 GTGCC
216314 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 14
0.65 0.06 0.29
Matches are distributed among these distances:
15 1 0.03
16 10 0.31
17 3 0.09
20 2 0.06
21 15 0.47
22 1 0.03
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (21 bp):
GTGCCGGTGTATTCAGGCTAT
Found at i:229798 original size:82 final size:82
Alignment explanation
Indices: 229697--229860 Score: 292
Period size: 82 Copynumber: 2.0 Consensus size: 82
229687 TTCTCTGCAT
* *
229697 GTTGTGGATAATCTTCATAGCTATGGTTGTCACCGCAAATCTCACAACAAAAGGTAGGAACATCA
1 GTTGTGGACAATCTTCATAGATATGGTTGTCACCGCAAATCTCACAACAAAAGGTAGGAACATCA
*
229762 ACTTGTTGAGCGACTTG
66 ACTTGTTAAGCGACTTG
*
229779 GTTGTGGACAATCTTCATAGATATGGTTGTCACCGCAAATCTCATAACAAAAGGTAGGAACATCA
1 GTTGTGGACAATCTTCATAGATATGGTTGTCACCGCAAATCTCACAACAAAAGGTAGGAACATCA
229844 ACTTGTTAAGCGACTTG
66 ACTTGTTAAGCGACTTG
229861 TATAGGTGCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (82 bp):
GTTGTGGACAATCTTCATAGATATGGTTGTCACCGCAAATCTCACAACAAAAGGTAGGAACATCA
ACTTGTTAAGCGACTTG
Found at i:233876 original size:43 final size:42
Alignment explanation
Indices: 233824--234185 Score: 411
Period size: 42 Copynumber: 8.3 Consensus size: 42
233814 TTATGAGGAA
*
233824 AAACGCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGC-TTTTCCAC
* *
233867 AAATGCCGCTAAATGCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCAC
1 AAA-----C-----GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCAC
* *
233919 AAACGCCGCTAAAGAACATAGTCTTTAGTGGCGC-TTTCTCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTC-CAC
* * *
233961 AAACACCGCTAAAGAACATGGTCTTTAACGGCGCTTCTCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCAC
*
234003 AAACGCCGCTAAAGAACATGGTCTTTAACGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT-CCAC
*
234046 AAACGCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTCTCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTC-CAC
* * * *
234089 AAACACTGCTAAAGGACATGGTCTTTAGCGGCGCTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCAC
* * **
234131 AAACGCCGCCAAAGAACATGATCTTTAGCGGCATTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT-CCAC
*
234174 AAACGCCACTAA
1 AAACGCCGCTAA
234186 GATTAACAAA
Statistics
Matches: 273, Mismatches: 31, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
41 3 0.01
42 133 0.49
43 97 0.36
47 1 0.00
48 1 0.00
52 10 0.04
53 28 0.10
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCAC
Found at i:233911 original size:53 final size:52
Alignment explanation
Indices: 233828--233931 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 52
233818 GAGGAAAAAC
* * * *
233828 GCCGCTATAGAACATGGTCTTTAGCGGCGCTTTTTCCACAAATGCCGCTAAAT
1 GCCGCTAAAGAACATGGTCTTTAGCAGCGC-TTTCCCACAAACGCCGCTAAAT
233881 GCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCACAAACGCCGCTAAA
1 GCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCACAAACGCCGCTAAA
233932 GAACATAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 19 0.40
53 28 0.60
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (52 bp):
GCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCACAAACGCCGCTAAAT
Found at i:233943 original size:42 final size:42
Alignment explanation
Indices: 233881--234185 Score: 414
Period size: 42 Copynumber: 7.2 Consensus size: 42
233871 GCCGCTAAAT
*
233881 GCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCACAAAC
* * *
233923 GCCGCTAAAGAACATAGTCTTTAGTGGCGCTTTCTCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCACAAAC
* *
233965 ACCGCTAAAGAACATGGTCTTTAACGGCGC-TTCTCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTC-CCACAAAC
*
234007 GCCGCTAAAGAACATGGTCTTTAACGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGC-TTTCCCACAAAC
* *
234050 GCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTCTCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGC-TTTCCCACAAAC
* * *
234093 ACTGCTAAAGGACATGGTCTTTAGCGGCGCTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCACAAAC
* * **
234135 GCCGCCAAAGAACATGATCTTTAGCGGCATTTTTCCCACAAAC
1 GCCGCTAAAGAACATGGTCTTTAGCGGC-GCTTTCCCACAAAC
*
234178 GCCACTAA
1 GCCGCTAA
234186 GATTAACAAA
Statistics
Matches: 232, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
41 3 0.01
42 134 0.58
43 92 0.40
44 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (42 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCCCACAAAC
Found at i:234127 original size:85 final size:84
Alignment explanation
Indices: 233881--234185 Score: 421
Period size: 85 Copynumber: 3.6 Consensus size: 84
233871 GCCGCTAAAT
* * *
233881 GCCGCTAAAGAACATGGTCTTTAGCAGCGCTTTCCCACAAACGCCGCTAAAGAACATAGTCTTTA
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGAACATGGTCTTTA
* *
233946 GTGGCGCTTTCTCACAAAC
66 GCGGCGCTTTCCCACAAAC
* * *
233965 ACCGCTAAAGAACATGGTCTTTAACGGCGCTTCTCCACAAACGCCGCTAAAGAACATGGTCTTTA
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGAACATGGTCTTTA
*
234030 ACGGCGCTTTTCCCACAAAC
66 GCGGCGC-TTTCCCACAAAC
* * * *
234050 GCCGCTAAAGAACATGGTCTTTAGCGGTGCTTTTCTCACAAACACTGCTAAAGGACATGGTCTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTC-CACAAACGCCGCTAAAGAACATGGTCTTT
234115 AGCGGCGCTTTCCCACAAAC
65 AGCGGCGCTTTCCCACAAAC
* * ** *
234135 GCCGCCAAAGAACATGATCTTTAGCGGCATTTTTCCCACAAACGCCACTAA
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT-CCACAAACGCCGCTAA
234186 GATTAACAAA
Statistics
Matches: 193, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
84 64 0.33
85 95 0.49
86 34 0.18
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (84 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGAACATGGTCTTTA
GCGGCGCTTTCCCACAAAC
Found at i:241965 original size:14 final size:14
Alignment explanation
Indices: 241946--241976 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
241936 TAGGTTTAAA
241946 AAATTTAATTAATT
1 AAATTTAATTAATT
*
241960 AAATTTATTTAATT
1 AAATTTAATTAATT
241974 AAA
1 AAA
241977 AATCTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTTAATTAATT
Done.