Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015014.1 Kokia drynarioides strain JFW-HI SEQ_130058, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10950
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:5687 original size:26 final size:25

Alignment explanation


    Indices: 5610--5679  Score: 69
    Period size: 24  Copynumber: 3.0  Consensus size: 25

       5600 GCTCGTCCAT

                 *                    
       5610 ATTTTTTAT-TTTTAAATATTT-AT-
          1 ATTTTATATATTTT-AATATTTAATA

               *                     
       5633 ATTATAT-TATTTTAATATTTAATA
          1 ATTTTATATATTTTAATATTTAATA

                           *        
       5657 ATTTTATATATTTT-TTATTTAAT
          1 ATTTTATATATTTTAATATTTAAT

       5680 GAAATTTTTT


Statistics
Matches: 39,  Mismatches: 4, Indels: 7
        0.78            0.08        0.14

Matches are distributed among these distances:
  22    8  0.21
  23   11  0.28
  24   14  0.36
  25    6  0.15

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (25 bp):   
ATTTTATATATTTTAATATTTAATA
Done.