genome.fa.s15016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015016.1 Kokia drynarioides strain JFW-HI SEQ_130060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  243239

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286--709	105	4.0	105	99	0	830	24	12	16	45	1.83
6340--6364	3	8.3	3	100	0	50	0	32	0	68	0.90
7112--7167	27	2.1	27	83	6	69	62	3	0	33	1.12
7410--7470	30	2.0	30	93	0	104	45	11	18	24	1.82
8052--8397	60	5.7	60	78	8	301	28	17	15	39	1.90
8171--8397	119	1.9	120	87	5	334	29	16	16	37	1.91
13815--14253	97	4.6	97	92	1	676	43	7	4	45	1.50
14347--14406	22	2.7	22	89	0	93	38	33	8	20	1.82
14343--14417	22	3.4	22	83	3	80	37	37	6	18	1.77
14419--14460	20	2.1	20	91	8	68	14	19	28	38	1.90
16791--16835	23	2.0	23	82	8	56	31	4	4	60	1.37
16784--16840	30	1.9	30	92	0	96	29	3	3	63	1.28
17676--18018	61	5.7	60	78	5	291	37	14	18	30	1.91
18034--18393	59	6.3	59	76	13	313	37	18	17	25	1.93
17887--18178	155	1.9	152	88	6	437	38	17	15	29	1.90
18078--18403	116	2.9	115	84	6	407	36	18	17	27	1.93
18078--18335	56	4.5	55	76	10	198	35	18	18	27	1.95
25359--25393	17	2.1	17	88	0	52	68	0	0	31	0.90
27199--27434	57	4.1	57	91	0	355	30	10	30	28	1.90
27413--27458	24	1.9	24	95	0	83	32	10	32	23	1.90
27359--27512	81	1.9	81	91	2	256	31	10	31	26	1.90
40687--40826	31	4.6	31	70	15	94	46	12	16	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40738--40818	31	2.6	31	86	2	99	46	9	14	28	1.77
55178--55241	16	3.9	16	76	9	58	54	1	3	40	1.25
55179--55302	3	39.0	3	68	13	52	58	1	4	35	1.29
55185--55293	13	8.5	12	78	8	65	57	1	3	36	1.27
56414--56801	88	4.4	86	82	7	428	34	31	3	30	1.73
56413--56824	29	14.1	29	82	6	431	34	31	3	30	1.75
56869--56930	27	2.2	28	82	5	72	35	32	9	22	1.87
56886--56940	29	1.9	28	85	3	74	30	30	10	27	1.91
62416--62466	24	2.2	23	82	3	57	25	0	9	64	1.24
65118--65345	75	3.1	74	84	4	264	32	22	24	21	1.98
65891--65933	22	2.0	22	86	13	63	37	2	37	23	1.68
65891--65933	21	2.0	21	86	13	61	37	2	37	23	1.68
69106--69150	15	2.8	16	83	13	56	48	11	8	31	1.69
69271--69323	23	2.3	24	75	12	58	60	1	0	37	1.08
73846--73878	8	4.1	8	96	0	57	21	0	0	78	0.75
89741--89765	5	5.0	5	100	0	50	80	0	0	20	0.72
92190--92264	29	2.5	31	80	4	91	36	10	10	42	1.74
92642--92710	29	2.3	31	87	9	99	52	1	4	42	1.30
92663--92712	15	3.3	15	71	17	50	48	0	4	48	1.20
94275--94444	86	2.0	85	92	1	286	54	12	6	25	1.62
95827--95903	36	2.1	36	87	0	109	31	16	19	32	1.94
112584--112617	8	4.1	8	96	3	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112966--113000	14	2.5	14	85	0	52	51	5	0	42	1.25
120742--120793	24	2.2	24	100	0	104	46	30	7	15	1.74
123015--123041	4	6.8	4	100	0	54	51	25	0	22	1.48
125050--125090	2	20.5	2	100	0	82	51	0	0	48	1.00
131761--131797	12	2.8	14	84	12	51	43	29	8	18	1.79
132029--132178	75	2.0	75	100	0	300	37	12	21	29	1.89
135076--135169	12	8.2	12	66	17	56	40	17	13	28	1.87
135083--135190	23	4.7	23	86	3	146	41	18	13	25	1.88
135083--135190	45	2.3	47	88	3	157	41	18	13	25	1.88
145935--146188	10	25.8	10	69	11	62	59	4	3	33	1.33
146009--146103	18	5.1	18	77	15	68	55	2	1	41	1.18
145995--146083	37	2.3	38	79	11	94	56	2	1	40	1.19
146003--146116	19	5.8	19	73	21	60	55	2	0	41	1.20
153695--153748	27	2.1	25	83	13	65	18	12	11	57	1.64
155291--155371	23	3.6	22	79	3	72	41	25	18	13	1.87
155359--155437	23	3.3	23	78	7	79	43	17	27	11	1.84
157384--157460	31	2.5	30	79	8	75	51	14	3	29	1.59
157591--157647	29	2.0	29	86	6	80	38	3	12	45	1.59
158223--158290	24	2.9	23	78	8	75	61	1	0	36	1.05
158223--158286	22	2.8	23	83	4	76	62	1	0	35	1.05
180708--180763	22	2.6	22	82	2	69	67	5	5	21	1.31
180761--180801	21	1.9	22	90	5	66	68	12	7	12	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195804--195862	29	2.0	30	86	3	84	27	6	13	52	1.65
196489--196536	15	3.0	16	75	9	53	10	12	2	75	1.14
207258--207300	20	2.2	20	83	8	52	27	4	2	65	1.25
218180--218231	17	3.1	17	91	0	86	38	0	1	59	1.08
218182--218232	23	2.2	23	82	6	59	39	0	1	58	1.09
218448--218495	15	3.1	15	77	11	51	52	0	2	45	1.12
218468--218506	18	2.1	18	85	4	51	56	0	0	43	0.99
219136--219303	30	5.6	30	75	8	137	36	23	3	36	1.72
219139--219253	61	1.9	60	83	5	151	37	20	2	40	1.66
219298--219638	59	5.8	59	73	14	205	36	25	5	33	1.79
219270--219543	28	9.5	27	69	16	140	37	24	4	33	1.74
219270--219580	116	2.7	115	79	8	344	36	24	4	34	1.76
219294--219681	29	13.3	29	70	16	241	36	25	5	32	1.79
221851--221887	17	2.1	18	85	14	51	59	2	0	37	1.12
224795--224835	20	2.0	20	90	9	64	43	12	7	36	1.70
229396--229427	14	2.1	16	88	11	50	31	0	0	68	0.90
233711--233757	20	2.3	21	75	10	53	68	2	4	25	1.19

Tables:   1

The End!