genome.fa.s15018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015018.1 Kokia drynarioides strain JFW-HI SEQ_130062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  425449

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6697--6739	21	2.0	22	82	13	54	48	2	16	32	1.58
11183--11211	3	9.7	3	100	0	58	31	0	0	68	0.89
11405--11433	14	2.0	15	93	6	51	58	0	6	34	1.25
27011--27130	58	2.1	58	87	3	170	33	0	19	46	1.56
41422--41529	55	2.0	55	83	0	135	50	13	8	27	1.71
51119--51206	24	4.0	23	74	12	69	50	1	0	48	1.08
64715--64740	13	2.0	13	100	0	52	15	38	7	38	1.76
71924--71950	2	13.5	2	100	0	54	48	0	0	51	1.00
74518--74569	24	2.2	24	82	0	59	55	0	5	38	1.24
75209--75261	28	2.0	28	88	7	83	26	11	11	50	1.71
75482--75535	27	2.1	27	82	6	67	14	16	5	62	1.49
77601--77722	55	2.2	55	88	2	174	30	9	13	47	1.73
81905--81942	2	19.0	2	100	0	76	50	0	50	0	1.00
93484--93511	2	14.0	2	100	0	56	0	50	0	50	1.00
95991--96019	2	15.0	2	92	7	51	48	0	51	0	1.00
95992--96017	13	2.0	13	100	0	52	46	0	53	0	1.00
95991--96020	15	2.0	15	100	0	60	46	0	53	0	1.00
99767--100256	110	4.5	110	82	1	552	32	24	17	26	1.96
105786--105817	2	16.0	2	100	0	64	0	0	50	50	1.00
114940--114966	5	5.4	5	100	0	54	81	0	0	18	0.69
116181--116226	23	2.0	24	87	12	69	36	8	6	47	1.60
122403--122452	21	2.5	20	78	9	59	68	6	2	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122403--122453	20	2.6	19	73	11	50	66	5	1	25	1.24
127960--128039	36	2.2	36	100	0	160	38	22	28	10	1.86
128357--128394	20	1.9	20	94	0	67	36	34	0	28	1.58
128453--128533	32	2.5	32	90	4	119	23	24	18	33	1.97
130482--130543	31	2.1	29	84	6	79	37	6	9	46	1.62
133936--134155	60	3.7	59	75	8	180	32	11	15	39	1.84
133993--134163	59	2.9	58	74	6	155	32	9	15	42	1.80
134099--134551	105	4.3	102	77	12	339	32	9	14	43	1.77
134097--134508	213	1.9	212	83	8	534	32	9	14	43	1.78
134097--134467	108	3.5	105	74	14	291	32	9	14	43	1.78
134325--134613	104	2.7	105	83	5	289	31	9	16	42	1.80
134644--134775	41	3.0	43	78	10	142	29	12	11	46	1.77
135077--135135	31	1.9	31	96	0	109	22	10	27	40	1.85
135721--135776	17	3.5	17	74	18	66	62	0	12	25	1.30
135710--135819	30	3.7	30	89	2	125	64	1	7	26	1.29
139560--140085	60	8.8	61	72	14	253	38	13	16	31	1.88
139561--139745	62	3.0	62	83	8	191	41	12	15	30	1.85
139629--139782	62	2.5	62	81	8	172	44	12	12	29	1.79
139560--140085	59	8.8	59	74	9	305	38	13	16	31	1.88
139752--140093	118	2.9	119	85	4	483	36	14	16	32	1.89
149498--149527	8	3.8	8	90	0	51	26	0	10	63	1.26
152421--152467	18	2.6	18	77	12	51	70	0	4	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156321--156360	15	2.7	15	88	3	55	40	2	2	55	1.27
168206--168252	24	2.0	23	88	8	69	36	0	0	63	0.94
168241--168294	22	2.5	23	77	17	62	46	3	3	46	1.38
168372--168411	13	3.2	13	78	7	55	55	0	5	40	1.22
180003--180055	4	13.2	4	88	7	81	69	0	30	0	0.88
180717--180759	4	10.8	4	100	0	86	48	25	0	25	1.51
181437--181470	16	2.1	16	88	0	50	50	5	0	44	1.26
190321--190370	24	2.1	24	85	7	66	32	2	2	64	1.16
190734--190769	6	6.5	6	81	18	51	0	16	0	83	0.65
190736--190767	15	2.1	15	100	0	64	0	12	0	87	0.54
193808--193894	32	2.8	31	78	18	83	65	2	2	29	1.17
199574--199601	2	14.0	2	100	0	56	50	0	0	50	1.00
208202--208240	20	2.0	20	89	0	60	30	0	5	64	1.15
208203--208246	20	2.2	20	83	0	52	31	0	4	63	1.14
217769--218775	261	3.8	260	85	3	1254	40	7	10	41	1.68
218730--219107	189	2.1	178	85	10	491	48	7	10	33	1.65
228345--228370	5	5.2	5	100	0	52	0	0	19	80	0.71
249863--249956	46	2.0	46	97	0	179	42	8	18	30	1.80
253815--253860	24	1.9	24	95	0	83	23	34	23	17	1.96
266068--266105	19	2.0	20	89	5	60	68	7	7	15	1.37
271715--271763	22	2.2	23	82	10	57	30	0	8	61	1.25
271870--271914	22	2.0	24	86	8	67	44	2	6	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277672--277728	30	2.0	30	82	6	73	45	3	7	43	1.48
288329--288360	15	2.1	16	94	5	57	90	0	9	0	0.45
289358--289385	2	14.0	2	100	0	56	0	50	0	50	1.00
289516--289541	3	8.7	3	100	0	52	65	0	34	0	0.93
299068--299126	29	2.0	30	93	3	102	25	32	3	38	1.72
299832--299873	2	21.0	2	100	0	84	50	0	0	50	1.00
303758--303782	3	8.3	3	100	0	50	32	0	0	68	0.90
304413--304450	2	20.5	2	84	15	55	55	0	0	44	0.99
304412--304450	12	3.5	11	90	10	62	56	0	0	43	0.99
312771--312801	5	6.2	5	100	0	62	41	38	0	19	1.51
313305--313330	5	5.2	5	100	0	52	80	0	0	19	0.71
316120--316205	43	2.0	43	93	0	145	26	13	13	45	1.82
332637--332661	2	12.5	2	100	0	50	0	0	48	52	1.00
334657--334689	2	16.5	2	100	0	66	48	0	0	51	1.00
359188--359228	13	2.8	15	82	17	59	24	0	2	73	0.96
362907--362956	26	1.9	26	83	0	64	50	0	0	50	1.00
369376--369403	12	2.3	12	100	0	56	50	0	0	50	1.00
371484--371531	20	2.5	19	86	6	62	64	6	25	4	1.35
385491--385575	41	2.0	42	86	6	120	40	1	4	54	1.29
387696--387728	2	16.5	2	93	0	57	51	0	0	48	1.00
388333--388396	28	2.4	26	81	5	74	57	1	6	34	1.33
404511--404549	17	2.3	17	86	0	60	35	7	5	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423616--423700	27	3.1	27	67	6	64	48	1	5	44	1.34
425302--425376	32	2.3	33	80	13	93	53	1	1	44	1.17
425323--425411	32	2.9	31	76	15	78	57	0	1	41	1.06

Tables:   1

The End!