Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015019.1 Kokia drynarioides strain JFW-HI SEQ_130063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86079
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Warning! 212 characters in sequence are not A, C, G, or T
Found at i:952 original size:23 final size:22
Alignment explanation
Indices: 901--959 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
891 AGCTTCCCAC
*
901 AATTTATA-ATTTTTTTTTATA
1 AATTTATATATTATTTTTTATA
* *
922 AAGATTATATATTATTTTTTACTT
1 AA-TTTATATATTATTTTTTA-TA
946 AATTTATATATTAT
1 AATTTATATATTAT
960 AAAAATGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 5 0.16
23 21 0.68
24 3 0.10
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
AATTTATATATTATTTTTTATA
Found at i:2261 original size:18 final size:19
Alignment explanation
Indices: 2238--2277 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
2228 TTAGAAATTA
*
2238 TTTTTATCAT-ACTAATAT
1 TTTTTATAATAACTAATAT
*
2256 TTTTTATAATAATTAATAT
1 TTTTTATAATAACTAATAT
2275 TTT
1 TTT
2278 ATAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTATAATAACTAATAT
Found at i:11716 original size:20 final size:20
Alignment explanation
Indices: 11661--11718 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
11651 TTTTTAAAAT
**
11661 AAAA-ATTTTGATACTTTTA
1 AAAATATTTTGATTTTTTTA
* *
11680 TAAATATTTTGAATTTTTTA
1 AAAATATTTTGATTTTTTTA
11700 AAAATATTTTGATTTTTTT
1 AAAATATTTTGATTTTTTT
11719 TTTTGTATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
AAAATATTTTGATTTTTTTA
Found at i:13450 original size:20 final size:20
Alignment explanation
Indices: 13413--13451 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13403 TCTATTTGGT
*
13413 CAAAAATGTTTTTGAAAAGC
1 CAAAAATGTTTTTCAAAAGC
13433 CAAAAAT-TTTCTTCAAAAG
1 CAAAAATGTTT-TTCAAAAG
13452 TTGCTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (20 bp):
CAAAAATGTTTTTCAAAAGC
Found at i:13669 original size:31 final size:31
Alignment explanation
Indices: 13631--13788 Score: 95
Period size: 31 Copynumber: 5.3 Consensus size: 31
13621 TTAATATAAT
13631 ATTTGGTACTTGAACTTGACTCGTTTTT-CTA
1 ATTTGGTACTTGAACTTGACTC-TTTTTACTA
* *
13662 ATTTGGTATTTAAACTT---T-TTTTTACTCA
1 ATTTGGTACTTGAACTTGACTCTTTTTACT-A
* *
13690 ATTTGGTACATGAACTTGAC-CTTTTTTCCTA
1 ATTTGGTACTTGAACTTGACTC-TTTTTACTA
* * *
13721 ATTTGGTACCTAAACTT---T-TTTTGGACCTA
1 ATTTGGTACTTGAACTTGACTCTTTT-TA-CTA
* * * *
13750 ATTTGGAACTTGAACTTGGC-ATTTTTCCTA
1 ATTTGGTACTTGAACTTGACTCTTTTTACTA
13780 ATTTGGTAC
1 ATTTGGTAC
13789 CTAAACTTTT
Statistics
Matches: 97, Mismatches: 16, Indels: 29
0.68 0.11 0.20
Matches are distributed among these distances:
26 5 0.05
27 6 0.06
28 16 0.16
29 17 0.18
30 11 0.11
31 31 0.32
32 11 0.11
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTGAACTTGACTCTTTTTACTA
Found at i:13723 original size:59 final size:59
Alignment explanation
Indices: 13631--13803 Score: 226
Period size: 59 Copynumber: 2.9 Consensus size: 59
13621 TTAATATAAT
* **
13631 ATTTGGTACTTGAACTTGACTCGTTTTT-CTAATTTGGTATTTAAACTTTTTTTTA-CTCA
1 ATTTGGTACTTGAACTTGAC-CATTTTTCCTAATTTGGTACCTAAACTTTTTTTTACCT-A
* * *
13690 ATTTGGTACATGAACTTGACCTTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGACCTA
1 ATTTGGTACTTGAACTTGACCATTTTTCCTAATTTGGTACCTAAACTTTTTTT-TACCTA
* *
13750 ATTTGGAACTTGAACTTG-GCATTTTTCCTAATTTGGTACCTAAACTTTTTTTTA
1 ATTTGGTACTTGAACTTGACCATTTTTCCTAATTTGGTACCTAAACTTTTTTTTA
13804 GATCCAATTT
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
58 7 0.07
59 74 0.73
60 18 0.18
61 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.49
Consensus pattern (59 bp):
ATTTGGTACTTGAACTTGACCATTTTTCCTAATTTGGTACCTAAACTTTTTTTTACCTA
Found at i:13751 original size:29 final size:28
Alignment explanation
Indices: 13659--13823 Score: 88
Period size: 30 Copynumber: 5.6 Consensus size: 28
13649 ACTCGTTTTT
** *
13659 CTAATTTGGTATTTAAACTTTTTTTTA-
1 CTAATTTGGTACCTAAACTTTTTTTGAC
* * *
13686 CTCAATTTGGTACATGAACTTGACCTTTTT-TC
1 CT-AATTTGGTACCTAAACTT----TTTTTGAC
13718 CTAATTTGGTACCTAAACTTTTTTTGGAC
1 CTAATTTGGTACCTAAACTTTTTTT-GAC
* * *
13747 CTAATTTGGAACTTGAACTTGGCATTTTT--C
1 CTAATTTGGTACCTAAACTT----TTTTTGAC
13777 CTAATTTGGTACCTAAACTTTTTTTTAGATC
1 CTAATTTGGTACCTAAAC-TTTTTTT-GA-C
*
13808 C-AATTTGATACCTAAA
1 CTAATTTGGTACCTAAA
13824 TTTATTAAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 31
0.70 0.09 0.20
Matches are distributed among these distances:
27 12 0.11
28 15 0.14
29 18 0.17
30 30 0.28
31 20 0.19
32 7 0.07
33 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (28 bp):
CTAATTTGGTACCTAAACTTTTTTTGAC
Found at i:13796 original size:30 final size:28
Alignment explanation
Indices: 13654--13796 Score: 96
Period size: 29 Copynumber: 4.9 Consensus size: 28
13644 ACTTGACTCG
** *
13654 TTTTT-CTAATTTGGTATTTAAACTT-T
1 TTTTTCCTAATTTGGTACCTAAACTTGC
* * *
13680 TTTTTACTCAATTTGGTACATGAACTTGACC
1 TTTTTCCT-AATTTGGTACCTAAACTTG--C
13711 TTTTTTCCTAATTTGGTACCTAAACTT--
1 -TTTTTCCTAATTTGGTACCTAAACTTGC
* * *
13738 TTTTTGGACCTAATTTGGAACTTGAACTTGGC
1 TTTTT---CCTAATTTGGTACCTAAACTT-GC
13770 ATTTTTCCTAATTTGGTACCTAAACTT
1 -TTTTTCCTAATTTGGTACCTAAACTT
13797 TTTTTTAGAT
Statistics
Matches: 91, Mismatches: 13, Indels: 22
0.72 0.10 0.17
Matches are distributed among these distances:
26 10 0.11
27 2 0.02
28 15 0.16
29 18 0.20
30 18 0.20
31 16 0.18
32 7 0.08
33 5 0.05
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (28 bp):
TTTTTCCTAATTTGGTACCTAAACTTGC
Found at i:14337 original size:19 final size:19
Alignment explanation
Indices: 14313--14357 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14303 TCGTACAAAC
*
14313 AAACAAAT-TAATTTATGAA
1 AAACAAATATAATTTA-CAA
*
14332 AAACAATTATAATTTACAA
1 AAACAAATATAATTTACAA
14351 AAACAAA
1 AAACAAA
14358 AAAATATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27
Consensus pattern (19 bp):
AAACAAATATAATTTACAA
Found at i:16941 original size:9 final size:9
Alignment explanation
Indices: 16893--16991 Score: 56
Period size: 9 Copynumber: 10.2 Consensus size: 9
16883 TATACTTTCA
16893 ATAAGTTTTT
1 ATAA-TTTTT
16903 ATAACTCTTTT
1 ATAA-T-TTTT
*
16914 AATTAATTTTC
1 -A-TAATTTTT
*
16925 ATATTTTTT
1 ATAATTTTT
*
16934 ATAATTTTA
1 ATAATTTTT
*
16943 ATTATTTTT
1 ATAATTTTT
16952 ATATATTTTTCT
1 ATA-A-TTTT-T
* *
16964 ATCATTTCT
1 ATAATTTTT
16973 A-AATTTTT
1 ATAATTTTT
*
16981 ATAATATTT
1 ATAATTTTT
16990 AT
1 AT
16992 TTGACATTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
8 6 0.09
9 32 0.47
10 10 0.15
11 12 0.18
12 5 0.07
13 3 0.04
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:17069 original size:21 final size:21
Alignment explanation
Indices: 17028--17081 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
17018 ATTAATAATA
*
17028 TTTAATAGTTTTATATATTTT
1 TTTAATAATTTTATATATTTT
17049 TTTAATAATTTTGAT-T-TTTT
1 TTTAATAATTTT-ATATATTTT
*
17069 TTTCTATAATTTT
1 TTT-AATAATTTT
17082 CAAAATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 7 0.24
21 20 0.69
22 2 0.07
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTAATAATTTTATATATTTT
Found at i:37260 original size:20 final size:20
Alignment explanation
Indices: 37235--37280 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
37225 AATTCTTCAT
37235 AGGATATCCCAATGTAGAAG
1 AGGATATCCCAATGTAGAAG
37255 AGGATATCCCAATGTAGAAG
1 AGGATATCCCAATGTAGAAG
37275 A-GATAT
1 AGGATAT
37281 TGATAAATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (20 bp):
AGGATATCCCAATGTAGAAG
Found at i:49523 original size:50 final size:50
Alignment explanation
Indices: 49448--49558 Score: 222
Period size: 50 Copynumber: 2.2 Consensus size: 50
49438 ACTAAGCTCT
49448 TCTAAAATCGTGCTTTGCATTCAATTATCAGTCATTTAACCTATCTGTTG
1 TCTAAAATCGTGCTTTGCATTCAATTATCAGTCATTTAACCTATCTGTTG
49498 TCTAAAATCGTGCTTTGCATTCAATTATCAGTCATTTAACCTATCTGTTG
1 TCTAAAATCGTGCTTTGCATTCAATTATCAGTCATTTAACCTATCTGTTG
49548 TCTAAAATCGT
1 TCTAAAATCGT
49559 TATCATTTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (50 bp):
TCTAAAATCGTGCTTTGCATTCAATTATCAGTCATTTAACCTATCTGTTG
Found at i:63396 original size:8 final size:8
Alignment explanation
Indices: 63383--63423 Score: 82
Period size: 8 Copynumber: 5.1 Consensus size: 8
63373 TTCATGCCTT
63383 AAAAGAAA
1 AAAAGAAA
63391 AAAAGAAA
1 AAAAGAAA
63399 AAAAGAAA
1 AAAAGAAA
63407 AAAAGAAA
1 AAAAGAAA
63415 AAAAGAAA
1 AAAAGAAA
63423 A
1 A
63424 TCACATGGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:71164 original size:29 final size:29
Alignment explanation
Indices: 71118--71183 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
71108 GTAGATTTTA
* * *
71118 AGTTATTTTTGTATTTAATAAAAAAAATG
1 AGTTATTTATGTAATTAATAAAAAAAAGG
*
71147 AGTTATTTATGTAATTAATTAAAAAAAGG
1 AGTTATTTATGTAATTAATAAAAAAAAGG
*
71176 GGTTATTT
1 AGTTATTT
71184 TTTTTTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (29 bp):
AGTTATTTATGTAATTAATAAAAAAAAGG
Found at i:73002 original size:317 final size:317
Alignment explanation
Indices: 72427--73004 Score: 942
Period size: 317 Copynumber: 1.8 Consensus size: 317
72417 AACCTCAAAA
* * *
72427 CACAACCCATTAGCAACAAAAAGTGGGCATATCATTCAAGAAAAATCGTCAAAATTACCCTTAAT
1 CACAACCCATTAGCAACAAAAAGTGGGCATACCATTCAAGAAAAATAGTCAAAATTACCCTTAAA
*
72492 TATTTTAAATATTAAAAATATATTTATTAAAATATTTTAAAACAATTTGATTGTTAATTTAAGCT
66 TATTTTAAATATTAAAAATATATTTATTAAAATATTTTAAAACAATTTGATTGTTAATTTAAACT
* *
72557 TTTTGAAAAGATAGTAAAATCAATCCACCAAGCACCAACCATCTTGCAGAGAAAATTAAATCCAT
131 TTCTGAAAAGATAGTAAAATCAATCCACCAAACACCAACCATCTTGCAGAGAAAATTAAATCCAT
* * *
72622 GTGAGCCCAATGATAATGACACGTGGAACCACTTTACTTTAACGTGTAATTTTTTGTTAATGACG
196 GTGAGCCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGTTAATGACG
72687 AACATTATTTTTACATAACTCCAAATAAACACACCGTCTATTCAAACACATTCTAAG
261 AACATTATTTTTACATAACTCCAAATAAACACACCGTCTATTCAAACACATTCTAAG
*
72744 CACAACCCATTAGCAACAAAAATTGGGCATACCATTCAAGAAAAATAGTCAAAATTACCCTTAAA
1 CACAACCCATTAGCAACAAAAAGTGGGCATACCATTCAAGAAAAATAGTCAAAATTACCCTTAAA
* * *
72809 TATTTTAAATGTTAAAAATTTATTTTTTAAAATATTTTAAAACAATTTGATTGTTAATTTAAACT
66 TATTTTAAATATTAAAAATATATTTATTAAAATATTTTAAAACAATTTGATTGTTAATTTAAACT
* ** * * * *
72874 TTCTGGAAAGATAGTAAAATCGGTCCACTAAATACCAATCATCTTGCAGATAAAATTAAATCCAT
131 TTCTGAAAAGATAGTAAAATCAATCCACCAAACACCAACCATCTTGCAGAGAAAATTAAATCCAT
* *
72939 GT-AGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAATGGGTAACTTTTTGTTAATGAC
196 GTGA-GCCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGTTAATGAC
73003 GA
260 GA
73005 CAAAGCTAAT
Statistics
Matches: 238, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
316 1 0.00
317 237 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.32
Consensus pattern (317 bp):
CACAACCCATTAGCAACAAAAAGTGGGCATACCATTCAAGAAAAATAGTCAAAATTACCCTTAAA
TATTTTAAATATTAAAAATATATTTATTAAAATATTTTAAAACAATTTGATTGTTAATTTAAACT
TTCTGAAAAGATAGTAAAATCAATCCACCAAACACCAACCATCTTGCAGAGAAAATTAAATCCAT
GTGAGCCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGTTAATGACG
AACATTATTTTTACATAACTCCAAATAAACACACCGTCTATTCAAACACATTCTAAG
Found at i:73196 original size:226 final size:226
Alignment explanation
Indices: 72802--73230 Score: 779
Period size: 226 Copynumber: 1.9 Consensus size: 226
72792 TCAAAATTAC
*
72802 CCTTAAATATTTTAAATGTTAAAAATTTATTTTTTAAAATATTTTAAAACAATTTGATTGTTAAT
1 CCTTAAATATTTTAAATGTTAAAAATTTATTTATTAAAATATTTTAAAACAATTTGATTGTTAAT
* * *
72867 TTAAACTTTCTGGAAAGATAGTAAAATCGGTCCACTAAATACCAATCATCTTGCAGATAAAATTA
66 TTAAACTTTCTGAAAAAATAGTAAAATCGGTCCACTAAACACCAATCATCTTGCAGATAAAATTA
*
72932 AATCCATGTAGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAATGGGTAACTTTTTGTT
131 AATCCATGTAGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGTT
72997 AATGACGACAAAGCTAATTATTTTATCAGGT
196 AATGACGACAAAGCTAATTATTTTATCAGGT
73028 CCTTAAATATTTTAAATGTTAAAAATTTATTTATTAAAATATTTTAAAACAATTTGATTGTTAAT
1 CCTTAAATATTTTAAATGTTAAAAATTTATTTATTAAAATATTTTAAAACAATTTGATTGTTAAT
*
73093 TTAAACTTTCTGAAAAAATAGTAAAGTCGGTCCACTAAACACCAA-CTATCTTGCAGATAAAATT
66 TTAAACTTTCTGAAAAAATAGTAAAATCGGTCCACTAAACACCAATC-ATCTTGCAGATAAAATT
*
73157 AAATCCATGTGGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGT
130 AAATCCATGTAGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGT
73222 TAATGACGA
195 TAATGACGA
73231 TTGTTGTTTT
Statistics
Matches: 195, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
225 1 0.01
226 194 0.99
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (226 bp):
CCTTAAATATTTTAAATGTTAAAAATTTATTTATTAAAATATTTTAAAACAATTTGATTGTTAAT
TTAAACTTTCTGAAAAAATAGTAAAATCGGTCCACTAAACACCAATCATCTTGCAGATAAAATTA
AATCCATGTAGGTCCAATGACAATGACACGTGGAACCACTTTACTTTAACGGGTAACTTTTTGTT
AATGACGACAAAGCTAATTATTTTATCAGGT
Found at i:74740 original size:75 final size:75
Alignment explanation
Indices: 74617--74762 Score: 256
Period size: 75 Copynumber: 1.9 Consensus size: 75
74607 TGGCGCTCCT
*
74617 TTTTCAACCAATCTAAAGGCCAATTACTTTATCAGGTCTCTGAATATTTTATATAATTACACTCA
1 TTTTCAACCAATCTAAAAGCCAATTACTTTATCAGGTCTCTGAATATTTTATATAATTACACTCA
74682 AATTCGGTGA
66 AATTCGGTGA
* * *
74692 TTTTCAACCAATCTAAAAGCCTATTATTTTATCAGGTCTCTGAATATTTTATATAATTACACTCC
1 TTTTCAACCAATCTAAAAGCCAATTACTTTATCAGGTCTCTGAATATTTTATATAATTACACTCA
74757 AATTCG
66 AATTCG
74763 CTGTCGTCAC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (75 bp):
TTTTCAACCAATCTAAAAGCCAATTACTTTATCAGGTCTCTGAATATTTTATATAATTACACTCA
AATTCGGTGA
Found at i:76727 original size:23 final size:24
Alignment explanation
Indices: 76693--76737 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
76683 AGTTTATTTC
*
76693 AAAATATCAATA-ATTCTTAAATT
1 AAAATATCAATATATTATTAAATT
*
76716 AAAATATTAATATATTATTAAA
1 AAAATATCAATATATTATTAAA
76738 AAACATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAATATCAATATATTATTAAATT
Found at i:84262 original size:38 final size:38
Alignment explanation
Indices: 84220--84294 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
84210 TAAACATTAG
* *
84220 TCAAAAGTTTTAATTTTAAAAAGGTACTTAAATTTTAA
1 TCAAAAGTTCTAATTATAAAAAGGTACTTAAATTTTAA
* *
84258 TCAAAAGTTCTAATTATAAAAAGGTCCTTAAGTTTTA
1 TCAAAAGTTCTAATTATAAAAAGGTACTTAAATTTTA
84295 GAAAAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (38 bp):
TCAAAAGTTCTAATTATAAAAAGGTACTTAAATTTTAA
Done.