genome.fa.s15024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015024.1 Kokia drynarioides strain JFW-HI SEQ_130068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  224678

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--97	3	28.0	3	69	4	53	35	1	5	57	1.31
760--828	28	2.4	28	85	7	86	53	1	2	42	1.24
15886--15936	4	12.8	4	85	0	57	27	15	27	29	1.96
16054--16369	158	2.0	157	96	1	580	37	5	10	46	1.61
21282--21310	7	4.1	7	100	0	58	13	0	58	27	1.36
30939--30988	23	2.3	22	80	13	59	38	6	0	56	1.24
30937--30988	22	2.3	23	75	24	58	38	5	0	55	1.24
37729--37838	57	1.9	57	90	0	175	30	17	7	44	1.76
37984--38206	57	3.9	57	77	11	206	30	17	8	43	1.78
37992--38132	58	2.4	58	85	9	191	29	14	7	48	1.71
38327--38391	11	5.2	12	74	18	53	30	1	3	64	1.18
38439--38588	56	2.7	55	76	9	149	43	8	18	29	1.80
38439--38622	57	3.3	55	76	9	165	42	8	17	30	1.80
42265--42339	36	2.1	36	89	0	114	32	8	34	25	1.85
44808--44839	16	2.0	16	93	0	55	37	21	6	34	1.79
47644--47686	22	2.0	22	81	9	52	60	2	0	37	1.10
68513--68575	31	2.0	32	90	9	103	47	12	12	26	1.78
73512--73543	3	10.7	3	93	0	55	31	3	0	65	1.08
87438--87487	24	2.1	24	92	0	82	28	12	12	48	1.76
87628--87710	41	2.0	41	92	0	139	38	13	10	37	1.79
88114--88211	48	2.0	48	96	0	178	36	23	4	35	1.74
88278--88320	22	1.9	23	85	4	61	44	6	6	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90697--90725	14	2.1	14	100	0	58	34	27	6	31	1.83
95622--95651	5	6.0	5	100	0	60	40	20	40	0	1.52
97249--97303	27	2.1	26	89	3	83	41	1	38	18	1.61
98949--98973	2	12.5	2	100	0	50	52	0	0	48	1.00
106270--106328	29	2.1	29	93	3	102	22	11	10	55	1.65
106595--106634	21	1.9	21	85	10	55	55	0	0	45	0.99
106602--106644	14	3.5	12	79	14	52	48	0	0	51	1.00
106593--106654	26	2.5	25	82	7	83	58	0	0	41	0.98
107089--107145	25	2.2	27	78	12	66	35	3	1	59	1.25
109619--109667	2	24.5	2	100	0	98	48	0	0	51	1.00
115405--115512	36	3.0	35	91	1	180	24	40	19	15	1.90
127640--127667	6	4.7	6	100	0	56	14	67	17	0	1.22
127753--127780	7	4.0	7	100	0	56	14	28	0	57	1.38
129034--129067	16	2.1	17	88	5	52	35	2	0	61	1.11
131525--131730	29	7.1	28	73	16	161	35	29	4	30	1.78
131524--131779	58	4.4	59	80	9	267	34	28	6	30	1.82
134904--134984	27	3.0	26	73	20	69	67	2	0	29	1.03
135362--135402	21	2.0	21	90	0	64	24	12	12	51	1.73
136507--136545	19	2.0	20	95	5	71	46	33	0	20	1.51
136601--136628	2	14.0	2	100	0	56	50	0	0	50	1.00
142990--143061	31	2.4	30	82	13	85	37	12	8	41	1.73
143570--143629	31	2.1	29	81	12	70	40	8	11	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143713--143797	17	4.8	17	73	12	64	38	3	8	49	1.50
143752--143792	6	7.2	6	78	10	50	46	0	4	48	1.23
143772--143797	11	2.4	11	100	0	52	46	0	7	46	1.31
144441--144550	12	8.8	12	69	20	64	56	4	3	35	1.37
144439--144492	25	2.2	25	89	0	81	62	3	0	33	1.12
145637--145922	29	9.8	28	73	12	220	36	25	2	35	1.71
145642--145909	58	4.6	58	80	7	283	37	23	2	35	1.71
145817--146063	29	8.5	29	69	15	93	34	23	5	37	1.77
145637--146063	59	7.3	59	76	12	214	34	23	4	37	1.75
147712--147760	6	8.2	6	95	0	62	4	42	0	53	1.20
159961--160001	3	13.7	3	89	0	55	34	58	0	7	1.26
166001--166041	18	2.3	18	87	4	57	43	7	0	48	1.30
176632--176660	14	2.1	14	93	6	51	17	0	3	79	0.87
183202--183276	27	2.8	27	82	9	84	52	2	2	42	1.29
183964--184207	132	1.8	134	84	6	336	27	11	6	54	1.62
198378--198486	54	2.0	54	98	0	209	31	19	8	41	1.81
202742--202775	15	2.2	16	89	5	52	67	0	0	32	0.91
204249--204290	15	2.8	15	100	0	84	66	0	0	33	0.92
209880--209926	21	2.1	21	84	7	58	42	8	4	44	1.54
212903--212974	30	2.4	31	80	2	83	40	6	0	52	1.28
213695--213744	20	2.5	20	80	3	57	20	0	10	70	1.16
221724--221774	18	2.8	18	77	14	52	72	1	17	7	1.18

Tables:   1

The End!