genome.fa.s15028.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015028.1 Kokia drynarioides strain JFW-HI SEQ_130072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198098

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11327--11352	11	2.4	11	100	0	52	0	7	0	92	0.39
19367--19414	20	2.4	18	78	18	51	54	0	0	45	0.99
21648--21805	29	5.4	28	68	18	97	34	6	25	32	1.81
21607--21835	59	3.9	59	84	2	300	36	6	25	31	1.80
21664--21880	29	7.3	29	71	15	99	33	4	27	35	1.76
21605--21860	119	2.2	117	87	4	356	35	5	25	33	1.79
21638--21997	30	12.2	30	70	15	155	34	4	25	35	1.77
21788--22016	29	7.8	29	74	9	106	32	2	25	38	1.70
21795--22020	59	3.9	58	77	10	221	31	2	26	38	1.70
21902--22020	29	4.1	29	78	11	109	33	1	26	37	1.67
22467--22535	35	2.0	35	97	0	129	47	8	2	39	1.49
23851--23914	17	3.8	16	72	13	56	51	3	4	40	1.38
23851--23953	52	2.0	52	84	0	134	55	4	4	34	1.43
24284--25160	206	4.3	206	84	5	1135	21	21	19	37	1.95
24764--25148	192	2.0	192	93	0	653	21	20	21	36	1.95
25082--25240	80	2.0	80	91	0	255	17	21	21	39	1.92
25436--25574	39	3.6	39	72	7	122	19	20	33	25	1.96
25646--25793	39	3.8	39	75	7	147	22	18	31	27	1.97
25645--25789	78	1.9	78	89	2	229	23	18	31	26	1.98
26146--26432	100	2.9	99	79	10	311	15	26	19	38	1.91
26146--26666	49	10.5	49	69	13	264	15	26	19	37	1.93
26154--26456	97	3.1	97	78	8	319	15	27	19	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26393--26673	100	2.8	99	83	1	330	16	26	20	36	1.94
26188--26673	246	2.0	248	82	5	608	15	26	20	37	1.92
27908--27945	3	13.0	3	88	5	60	31	2	0	65	1.06
30487--30546	30	2.0	30	96	0	111	28	16	18	36	1.93
32529--33007	85	5.5	85	76	14	429	41	4	4	49	1.44
32569--32768	99	2.0	100	86	5	280	40	5	6	48	1.52
32668--33000	168	2.0	169	89	4	521	41	4	4	49	1.42
32979--33021	19	2.3	18	84	7	59	39	2	0	58	1.11
33171--33221	20	2.5	20	78	6	59	15	33	23	27	1.95
36380--36523	62	2.3	61	84	3	182	37	12	18	31	1.88
36380--36569	61	3.1	62	81	4	163	38	15	16	28	1.89
36413--36683	56	4.6	55	70	12	159	38	18	17	26	1.92
36744--36842	52	1.9	52	82	0	126	33	18	18	30	1.94
37404--37982	289	2.0	289	100	0	1158	34	15	24	25	1.94
39562--39596	10	3.5	10	88	0	52	51	0	8	40	1.33
41882--41925	20	2.2	20	87	4	61	72	0	2	25	0.96
41902--41968	29	2.3	29	78	12	66	65	2	1	29	1.16
43862--43912	21	2.4	21	96	0	93	43	15	13	27	1.85
45751--45775	2	12.5	2	100	0	50	48	0	0	52	1.00
51162--51219	3	19.3	3	100	0	116	0	34	32	32	1.58
51519--51549	3	10.7	3	93	6	55	35	0	0	64	0.94
61896--61937	18	2.2	19	83	8	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61886--61939	24	2.3	24	81	12	67	48	0	0	51	1.00
62421--62531	36	3.3	35	64	23	94	60	4	5	29	1.39
62394--62579	64	2.9	64	96	0	338	56	4	6	31	1.45
63673--63851	64	2.9	61	81	6	189	22	13	10	53	1.70
63694--63825	64	2.1	64	88	2	194	21	12	9	56	1.65
64079--64218	32	4.5	31	72	15	94	48	9	13	28	1.73
74478--74509	12	2.8	12	95	4	57	56	12	0	31	1.37
78272--78337	20	3.2	20	79	8	78	31	0	1	66	1.01
78279--78320	22	1.9	22	90	0	66	35	0	2	61	1.09
91261--91293	13	2.7	12	90	9	57	0	3	15	81	0.80
92116--92140	10	2.5	10	100	0	50	68	0	0	32	0.90
93795--93879	43	2.0	43	100	0	170	43	11	14	30	1.81
96905--96959	29	1.9	29	85	10	78	69	1	3	25	1.15
96905--96971	29	2.4	27	80	14	73	68	1	2	26	1.12
103041--103090	24	2.1	24	96	0	91	64	8	2	26	1.32
103218--103284	31	2.1	32	83	2	82	49	8	16	25	1.74
103235--103301	29	2.2	29	84	10	91	53	8	13	23	1.68
106914--106964	23	2.1	23	82	7	57	35	9	5	49	1.60
113469--113559	41	2.2	41	100	0	182	25	16	9	48	1.77
113697--113736	2	20.0	2	100	0	80	50	0	0	50	1.00
114294--114341	24	2.0	23	88	4	69	41	0	0	58	0.98
115710--115764	4	13.5	4	84	3	74	72	1	25	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116210--116256	24	2.0	24	95	0	85	46	21	14	17	1.83
120164--120225	31	2.0	31	96	0	115	29	24	22	24	1.99
121166--121197	16	2.0	16	100	0	64	75	6	6	12	1.19
121502--121530	12	2.3	13	88	11	51	65	0	0	34	0.93
121542--121595	6	8.7	6	84	8	72	0	42	0	57	0.98
121541--121602	18	3.3	19	82	8	81	0	40	0	59	0.97
121577--121629	4	13.2	4	79	15	56	1	28	0	69	0.99
121547--121607	20	3.2	20	86	4	81	0	39	0	60	0.97
121559--121629	24	2.9	23	83	12	79	1	32	0	66	1.01
131549--131577	14	2.1	14	93	6	51	0	17	0	82	0.66
171727--171880	79	1.9	79	96	0	281	42	2	9	46	1.49
172337--172429	32	2.9	32	79	4	98	24	9	9	55	1.62
172748--172794	13	3.7	13	82	5	60	57	8	0	34	1.29
172752--172802	25	2.1	24	92	3	84	66	5	0	27	1.14
173171--173217	24	2.0	24	86	0	67	38	2	2	57	1.23
176273--176329	29	1.9	30	85	7	80	26	0	3	70	1.03
176322--176376	27	2.1	27	82	3	67	49	0	0	50	1.00
176371--176414	19	2.2	21	80	12	56	29	2	4	63	1.26
179565--179860	147	2.0	147	100	0	592	36	16	18	28	1.92
180298--180351	19	2.8	21	73	21	55	64	0	0	35	0.94
180316--180387	10	7.1	11	70	16	57	68	2	0	29	1.04
180306--180378	29	2.5	29	80	8	78	65	2	0	31	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180307--180447	18	7.8	19	66	19	63	63	3	0	32	1.17
180353--180473	19	6.3	19	70	12	61	64	4	0	30	1.18
180281--180387	31	3.7	29	75	13	80	68	2	0	28	1.04
180341--180478	57	2.4	58	80	10	167	63	5	0	31	1.21
180279--180482	28	7.2	27	66	19	96	65	3	0	29	1.14
180983--181121	9	15.0	9	66	20	56	33	2	2	61	1.23
181774--181846	30	2.4	31	83	2	94	54	1	0	43	1.08
181832--181868	17	2.1	18	85	14	51	56	0	2	40	1.13
194844--194902	30	2.0	30	86	0	82	47	10	1	40	1.47
198029--198085	12	4.9	11	81	12	60	73	0	24	1	0.92
198040--198082	4	10.8	4	85	9	61	76	0	23	0	0.78

Tables:   1

The End!