genome.fa.s15029.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015029.1 Kokia drynarioides strain JFW-HI SEQ_130073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170105

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2531--2970	195	2.3	196	84	3	550	28	17	26	27	1.98
5594--5794	83	2.5	83	82	4	214	28	6	24	39	1.81
5594--5898	81	3.8	81	83	4	303	26	7	23	42	1.80
10759--10798	16	2.5	16	84	8	55	22	7	17	52	1.69
21080--21105	6	4.3	6	100	0	52	19	15	50	15	1.79
21627--21670	22	2.1	20	83	8	52	34	0	11	54	1.36
29456--29589	55	2.5	54	76	3	135	58	9	1	30	1.39
38844--38868	13	1.9	13	100	0	50	36	0	8	56	1.29
44411--44438	3	9.3	3	100	0	56	0	32	0	67	0.91
45067--45169	22	4.6	22	87	2	134	37	25	21	15	1.92
45067--45169	45	2.3	45	89	3	154	37	25	21	15	1.92
45158--45235	23	3.4	23	83	3	86	46	20	23	10	1.81
46969--47034	18	3.8	18	67	15	50	66	0	0	33	0.92
56007--56065	31	1.9	32	83	13	79	57	0	1	40	1.09
64155--64189	3	11.7	3	100	0	70	65	0	0	34	0.93
67947--68007	32	2.0	30	83	6	77	62	21	6	9	1.49
68000--68095	12	8.2	12	76	9	83	70	19	4	5	1.23
68011--68095	24	3.5	24	88	0	116	70	18	4	5	1.26
68000--68095	36	2.7	35	82	6	104	70	19	4	5	1.23
68074--68197	20	6.2	20	76	6	108	66	18	7	7	1.39
68091--68197	20	5.3	20	78	7	119	67	17	7	7	1.39
68091--68198	39	2.7	40	81	9	130	67	17	7	7	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70092--70175	36	2.3	36	83	0	96	32	27	14	26	1.95
70111--70225	36	3.2	36	77	9	117	29	29	16	24	1.96
71039--71092	20	2.5	21	79	14	65	35	24	3	37	1.73
73225--73265	2	21.0	2	95	5	75	51	0	0	48	1.00
73255--73302	19	2.5	18	77	12	51	45	2	0	52	1.12
73359--73401	19	2.2	20	80	12	54	53	2	0	44	1.13
73464--73508	23	2.0	23	86	8	65	51	2	4	42	1.34
78827--78895	21	3.4	21	68	11	72	42	23	27	7	1.80
78817--78898	39	2.1	39	90	0	128	37	20	28	13	1.90
78830--78912	39	2.1	39	95	0	148	40	22	25	10	1.86
97719--97752	13	2.5	13	90	9	50	73	0	0	26	0.83
100514--100567	21	2.6	21	82	5	65	27	12	27	31	1.93
101297--101323	10	2.7	10	100	0	54	22	51	7	18	1.70
101359--101397	18	2.1	19	85	9	53	17	20	0	61	1.34
104130--104205	38	2.0	38	94	2	136	46	2	10	40	1.52
120550--120604	13	4.3	13	68	13	51	36	0	9	54	1.32
120552--120622	19	3.8	19	90	3	108	36	0	7	56	1.27
120552--120638	6	14.3	6	73	11	70	37	1	5	55	1.31
122424--122739	30	10.8	30	78	10	239	35	26	2	36	1.70
122429--122741	87	3.6	88	80	7	291	35	26	2	35	1.70
122419--122769	29	12.0	28	77	12	226	35	26	3	35	1.72
128013--128077	25	2.5	26	85	2	87	33	27	10	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129647--129703	19	3.2	19	63	27	52	33	26	7	33	1.83
129633--129706	34	2.2	34	100	0	148	33	29	5	31	1.80
134200--134229	14	2.1	14	93	0	51	70	3	6	20	1.25
134385--134493	29	3.8	28	86	6	139	32	3	30	33	1.75
134448--134539	46	2.0	45	85	4	123	36	2	25	35	1.68
134492--134733	29	8.3	29	80	8	249	33	4	26	35	1.76
134419--134656	73	3.0	75	78	16	232	34	3	26	35	1.75
134493--134735	88	2.8	86	84	10	323	34	4	26	34	1.76
136638--136702	6	11.2	6	81	6	80	56	1	0	41	1.08
136641--136702	17	3.6	17	88	2	97	58	1	0	40	1.08
136647--136703	11	5.0	11	83	10	62	59	1	0	38	1.08
137185--137679	39	12.7	39	73	11	340	23	19	32	24	1.98
137224--137699	78	6.1	77	81	6	475	23	19	31	25	1.98
137175--137640	117	4.0	116	77	7	478	23	19	31	24	1.98
137942--138683	50	15.1	50	73	6	433	18	30	16	34	1.93
137955--138545	197	3.0	196	80	4	600	18	29	16	34	1.94
138118--138502	147	2.6	149	76	2	355	17	30	17	34	1.94
137907--138654	99	7.6	98	73	5	397	18	29	16	35	1.93
138315--138686	196	1.9	197	82	4	473	18	31	15	34	1.92
139588--139659	27	2.7	28	83	8	80	4	19	0	76	0.95
139597--139692	10	10.0	10	73	20	80	4	18	0	77	0.93
139618--139683	27	2.5	26	87	4	89	4	13	0	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139593--139683	30	3.3	28	80	13	93	3	17	0	79	0.87
139620--139691	36	2.1	34	86	5	99	4	13	0	81	0.82
144483--144521	14	2.7	15	84	7	55	69	5	5	20	1.28
144634--144953	29	11.1	27	75	12	189	33	3	27	36	1.73
144670--144958	29	10.1	28	79	10	284	33	3	28	35	1.74
146860--146940	6	14.2	6	78	10	89	55	2	0	41	1.13
146863--146940	17	4.6	17	93	0	129	56	2	0	41	1.13
150667--150702	12	3.0	12	88	11	56	41	0	50	8	1.33
150753--150827	30	2.4	30	86	8	98	44	5	0	50	1.24
154587--154791	109	1.9	111	89	2	324	41	14	11	32	1.81
155029--155070	13	3.5	12	81	12	50	71	7	0	21	1.09
155225--155368	60	2.4	58	80	10	157	54	2	18	25	1.57
158479--158503	13	1.9	13	100	0	50	68	16	0	16	1.22
161889--161938	26	2.0	25	81	18	59	66	4	8	22	1.35
162519--162562	20	2.2	20	84	4	54	50	15	2	31	1.57
162481--162900	146	2.8	144	75	11	386	43	8	3	44	1.51
162538--163015	139	3.3	143	79	12	491	44	8	3	43	1.51
162635--163070	139	3.1	139	78	10	304	43	9	2	44	1.52
166406--166576	62	2.8	63	80	7	201	26	16	16	39	1.90
166660--166736	38	2.0	38	94	0	136	36	2	19	41	1.65
167429--167482	17	3.5	16	71	23	53	61	3	11	24	1.46
167435--167525	30	3.1	30	87	1	112	62	4	6	26	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168888--168917	12	2.5	12	94	0	51	73	0	0	26	0.84
169800--169859	22	2.8	21	82	9	68	21	5	36	36	1.76

Tables:   1

The End!