Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015041.1 Kokia drynarioides strain JFW-HI SEQ_130085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7706
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31


Found at i:3815 original size:13 final size:14

Alignment explanation


    Indices: 3799--3835  Score: 51
    Period size: 13  Copynumber: 2.8  Consensus size: 14

       3789 AGAGTAAGAA

                          
       3799 AAAGTAAAAAACG-
          1 AAAGTAAAAAACGT

                       *  
       3812 AAAG-AAAAAATGT
          1 AAAGTAAAAAACGT

                       
       3825 AAAGTAAAAAA
          1 AAAGTAAAAAA

       3836 GAATATATAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  12    7  0.33
  13    8  0.38
  14    6  0.29

ACGTcount: A:0.73, C:0.03, G:0.14, T:0.11


Consensus pattern (14 bp):   
AAAGTAAAAAACGT
Done.