Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015045.1 Kokia drynarioides strain JFW-HI SEQ_130089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6212
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.33


Found at i:2646 original size:30 final size:30

Alignment explanation


    Indices: 2610--2666  Score: 80
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       2600 TTTTTAATGG

                          *                
       2610 TAAAATTAT-ATTTTAACTTTTAAAAATAAT
          1 TAAAATT-TGATTTGAACTTTTAAAAATAAT

                           *           
       2640 TAAAATTTGATTTGATCTTTTAAAAAT
          1 TAAAATTTGATTTGAACTTTTAAAAAT

       2667 TAAAAATATA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  29    1  0.04
  30   23  0.96

ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47


Consensus pattern (30 bp):   
TAAAATTTGATTTGAACTTTTAAAAATAAT

Found at i:3374 original size:16 final size:18

Alignment explanation


    Indices: 3355--3387  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       3345 ATGTAAATAA

                              
       3355 TTAAT-TTTT-ATATTAT
          1 TTAATGTTTTAATATTAT

                             
       3371 TTAATGTTTTAATATTA
          1 TTAATGTTTTAATATTA

       3388 AAATTAAATC


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    5  0.33
  17    4  0.27
  18    6  0.40

ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64


Consensus pattern (18 bp):   
TTAATGTTTTAATATTAT
Done.