genome.fa.s15046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015046.1 Kokia drynarioides strain JFW-HI SEQ_130090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  327920

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17224--17262	18	2.2	18	90	9	62	38	0	2	58	1.12
17226--17292	20	3.5	19	76	15	66	35	1	2	59	1.22
23510--23589	38	2.1	39	95	2	144	33	8	18	38	1.82
28061--28129	34	2.0	34	100	0	138	33	14	8	43	1.76
28107--28194	43	2.0	43	97	0	167	42	10	2	45	1.50
31343--31368	2	13.0	2	100	0	52	0	0	50	50	1.00
34345--34376	3	10.7	3	100	0	64	65	0	0	34	0.93
43219--43347	58	2.2	59	81	8	140	21	12	15	50	1.77
46473--46512	20	2.0	20	100	0	80	25	25	10	40	1.86
50046--50141	47	2.0	47	100	0	192	23	17	8	50	1.73
58217--58324	53	2.0	53	100	0	216	25	16	19	37	1.93
67887--67927	17	2.4	17	84	12	57	19	7	0	73	1.07
68350--68393	16	2.8	16	86	3	63	54	2	13	29	1.51
72131--72190	31	1.9	31	86	0	84	45	15	10	30	1.78
73185--73243	30	1.9	32	86	10	88	54	6	1	37	1.37
81935--81990	22	2.3	23	85	11	69	64	3	3	28	1.27
81936--81993	23	2.4	23	86	13	82	65	3	3	27	1.25
96886--96976	29	3.0	29	85	7	103	31	7	14	46	1.73
97097--97188	31	3.1	30	78	6	98	43	15	9	31	1.79
99345--99394	25	2.0	25	84	4	64	72	0	6	22	1.07
105165--105234	28	2.4	29	90	4	106	37	0	1	61	1.05
105174--105229	9	6.1	9	73	19	53	33	0	1	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105359--105396	17	2.2	18	85	4	51	71	2	2	23	1.12
111784--111913	70	1.9	67	84	4	170	33	11	10	44	1.75
116164--116189	2	13.0	2	100	0	52	50	0	0	50	1.00
116228--116292	20	3.2	21	78	4	53	60	1	1	36	1.16
116243--116306	18	3.1	21	73	13	53	59	0	1	39	1.07
116243--116299	20	2.9	19	77	10	62	59	0	1	38	1.08
116267--116312	22	2.1	22	84	8	58	65	2	0	32	1.05
116298--116336	16	2.4	18	76	24	50	69	2	2	25	1.14
117633--117664	3	10.7	3	100	0	64	0	31	0	68	0.90
117711--117736	2	13.0	2	100	0	52	0	50	0	50	1.00
122332--122364	6	5.5	6	96	0	57	0	81	0	18	0.68
127536--127603	24	2.8	25	88	4	97	27	11	7	52	1.64
127537--127615	24	3.3	24	84	7	90	29	13	8	48	1.73
131916--131954	6	6.5	6	96	0	69	0	33	46	20	1.51
143619--143695	39	2.0	39	86	0	109	33	15	16	33	1.91
161836--161927	42	2.2	42	98	0	175	40	17	13	29	1.87
174159--174185	9	3.0	9	100	0	54	88	0	11	0	0.50
182492--182628	30	4.6	30	74	11	120	49	2	3	44	1.32
182492--182629	59	2.3	61	82	5	165	49	2	3	44	1.32
182720--182751	3	11.0	3	93	6	57	68	0	0	31	0.90
182987--183013	2	13.5	2	100	0	54	51	0	48	0	1.00
185067--185102	15	2.4	15	90	0	54	27	13	0	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187094--187183	23	3.9	23	85	5	103	13	24	15	46	1.82
187117--187234	23	5.1	23	78	10	116	12	22	17	47	1.81
194289--194339	26	1.9	27	88	4	77	39	0	9	50	1.35
194597--194653	28	2.1	28	83	6	73	22	3	8	64	1.37
195160--195224	22	3.0	22	81	2	78	7	7	18	66	1.41
195248--195295	12	4.1	12	81	5	62	4	2	20	72	1.11
196910--196976	25	2.7	24	74	25	68	64	0	1	34	1.03
197570--197614	6	7.3	6	92	2	54	33	8	57	0	1.30
197570--197614	12	3.7	12	87	3	63	33	8	57	0	1.30
197570--197617	18	2.7	18	87	3	62	31	10	58	0	1.32
197637--197683	25	2.0	22	88	12	67	42	0	0	57	0.98
207102--207173	35	2.1	33	82	7	81	62	1	0	36	1.04
207949--208024	29	2.6	29	81	8	100	26	1	3	68	1.15
208443--208490	13	3.4	14	80	11	53	41	0	0	58	0.98
212127--212193	29	2.3	29	75	10	73	44	5	16	32	1.72
212171--212381	30	7.1	29	78	12	146	31	3	24	40	1.73
212171--212381	60	3.6	59	78	10	198	31	3	24	40	1.73
213361--213405	17	2.5	19	75	17	60	33	0	0	66	0.92
217068--217166	44	2.2	45	83	5	121	29	20	1	49	1.55
217714--217815	23	4.4	23	77	2	89	11	24	20	43	1.85
219194--219225	2	16.5	2	93	6	57	50	0	0	50	1.00
247014--247054	6	6.8	6	94	0	73	14	65	0	19	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252191--252223	17	1.9	17	93	0	57	72	0	0	27	0.85
252192--252232	17	2.4	17	87	4	55	70	2	0	26	0.99
252338--252387	16	3.1	15	82	8	55	56	2	0	42	1.11
252344--252381	18	2.1	18	85	9	51	65	0	0	34	0.93
252983--253099	59	1.9	62	83	11	154	45	1	15	37	1.56
254237--254440	102	2.0	102	100	0	408	35	25	15	23	1.94
254490--254518	6	4.8	6	100	0	58	17	13	0	68	1.20
254879--254912	16	2.1	16	88	5	50	38	0	0	61	0.96
262535--262652	59	2.0	59	98	0	227	34	10	27	27	1.89
281417--281496	41	2.0	41	100	0	160	31	7	7	53	1.57
285375--285428	15	3.3	15	74	18	54	46	0	1	51	1.11
285461--285497	16	2.3	16	86	13	58	40	0	0	59	0.97
285505--285550	20	2.2	21	88	3	67	56	0	0	43	0.99
287104--287141	19	2.0	19	100	0	76	31	10	26	31	1.90
288911--288938	4	7.0	4	100	0	56	75	0	25	0	0.81
291535--291619	28	3.1	28	70	1	82	27	1	24	47	1.60
291527--291613	14	6.1	14	67	16	54	27	1	21	49	1.57
291879--292015	45	3.0	45	87	2	186	18	20	27	32	1.96
293902--293950	16	3.2	16	75	16	59	34	0	6	59	1.22
294428--294472	21	2.2	21	84	4	56	57	11	2	28	1.45
294547--294624	23	3.3	23	75	15	70	64	10	0	25	1.25
294627--294651	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294826--294855	9	3.3	9	90	0	51	0	46	0	53	1.00
294822--294881	17	3.4	18	81	9	61	0	35	0	65	0.93
294852--294884	13	2.5	13	90	9	50	0	21	0	78	0.75
298128--298192	15	4.2	15	77	14	78	43	0	1	55	1.09
299583--299661	29	2.7	28	84	7	104	46	0	1	51	1.08
300491--300590	11	10.1	10	71	22	54	47	1	0	52	1.07
300510--300591	20	4.0	20	72	15	69	47	1	0	51	1.08
300491--300589	40	2.5	39	90	6	155	46	1	0	52	1.07
303153--303534	80	4.8	80	86	3	486	32	25	19	23	1.98
303976--304311	169	2.0	167	94	2	584	38	14	9	36	1.79
304484--304528	17	2.8	16	86	3	63	48	0	2	48	1.13
304568--304599	15	2.1	15	100	0	64	43	25	12	18	1.85
305270--305315	12	3.8	12	85	5	58	60	0	0	39	0.97
305284--305316	3	11.0	3	93	0	57	63	0	0	36	0.95
306426--306897	29	16.0	29	80	8	488	33	29	3	33	1.75
306445--306898	59	7.7	59	86	2	529	32	30	3	33	1.74
307190--307381	96	2.0	95	83	6	244	29	20	13	35	1.91
308582--308643	19	3.1	18	80	15	61	50	4	0	45	1.23
323051--323099	6	7.8	6	95	4	80	20	16	46	16	1.83
323581--323618	2	19.5	2	94	5	69	50	0	0	50	1.00
324237--324292	2	27.0	2	92	7	94	48	3	0	48	1.19
327383--327443	14	4.2	14	70	15	52	50	6	0	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327374--327443	20	3.3	21	70	29	67	50	5	0	44	1.26

Tables:   1

The End!