Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015051.1 Kokia drynarioides strain JFW-HI SEQ_130095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7758
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.26
Warning! 250 characters in sequence are not A, C, G, or T
Found at i:4221 original size:21 final size:22
Alignment explanation
Indices: 4189--4230 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
4179 CTATACAATA
4189 AAAAGAAAAACAAGAAA-TCAAC
1 AAAAGAAAAACAA-AAACTCAAC
4211 AAAAG-AAAACAAAAACTCAA
1 AAAAGAAAAACAAAAACTCAA
4231 AACCCAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 11 0.58
22 5 0.26
ACGTcount: A:0.74, C:0.14, G:0.07, T:0.05
Consensus pattern (22 bp):
AAAAGAAAAACAAAAACTCAAC
Found at i:6501 original size:43 final size:43
Alignment explanation
Indices: 6453--6541 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
6443 TCGGTGCATA
6453 GATAATTTCGATATTCTATGATAAATTGGTTATCATTACCAAC
1 GATAATTTCGATATTCTATGATAAATTGGTTATCATTACCAAC
6496 GATAATTTCGATATTCTATGATAAATTGGTTATCATTACCAAC
1 GATAATTTCGATATTCTATGATAAATTGGTTATCATTACCAAC
6539 GAT
1 GAT
6542 GCGCCTAGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (43 bp):
GATAATTTCGATATTCTATGATAAATTGGTTATCATTACCAAC
Done.