Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015052.1 Kokia drynarioides strain JFW-HI SEQ_130096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5722
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37


Found at i:4497 original size:21 final size:20

Alignment explanation


    Indices: 4457--4505  Score: 57
    Period size: 19  Copynumber: 2.5  Consensus size: 20

       4447 TCATTTGGAC

                             *   
       4457 TTTAA-TTTTTAAATAGTTTT
          1 TTTAATTTTTTAAATA-CTTT

                                 
       4477 TATTAATTTTTTAAA-ACTTT
          1 T-TTAATTTTTTAAATACTTT

                     
       4497 TTTAATTTT
          1 TTTAATTTT

       4506 ATTTATTATT


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  19    8  0.31
  20    5  0.19
  21    5  0.19
  22    8  0.31

ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65


Consensus pattern (20 bp):   
TTTAATTTTTTAAATACTTT
Done.