Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015053.1 Kokia drynarioides strain JFW-HI SEQ_130097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 444518
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 687 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:30 original size:4 final size:4
Alignment explanation
Indices: 1--50 Score: 55
Period size: 4 Copynumber: 12.0 Consensus size: 4
* * *
1 TTTC TTTCC TCTC ATTC TTCC TTTC TTTC TTTC TTTCC TTTC TTTC TTTC
1 TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC
51 CCGTTTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
4 31 0.82
5 7 0.18
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (4 bp):
TTTC
Found at i:38 original size:17 final size:17
Alignment explanation
Indices: 18--50 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8 CCTCTCATTC
18 TTCCTTTCTTTCTTTCT
1 TTCCTTTCTTTCTTTCT
35 TTCCTTTCTTTCTTTC
1 TTCCTTTCTTTCTTTC
51 CCGTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TTCCTTTCTTTCTTTCT
Found at i:2626 original size:7 final size:7
Alignment explanation
Indices: 2614--2646 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
2604 GATGATTATA
2614 ATAATAG
1 ATAATAG
2621 ATAATAG
1 ATAATAG
*
2628 ATACTAG
1 ATAATAG
2635 ATAATAG
1 ATAATAG
2642 ATAAT
1 ATAAT
2647 GACTATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (7 bp):
ATAATAG
Found at i:19404 original size:11 final size:11
Alignment explanation
Indices: 19388--19425 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
19378 CATTGATTAT
* *
19388 CTAATATTAAA
1 CTAATACTAAG
19399 CTAATACTAAG
1 CTAATACTAAG
19410 CTAATACTAAG
1 CTAATACTAAG
19421 C-AATA
1 CTAATA
19426 TTATGTGATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (11 bp):
CTAATACTAAG
Found at i:25785 original size:72 final size:72
Alignment explanation
Indices: 25615--25804 Score: 193
Period size: 72 Copynumber: 2.6 Consensus size: 72
25605 ACACGATCAT
* * * * * **
25615 GCCCACGCTTGTGTGTCCAGACCGTGTAACTCACTGTTTCCATTTCCAAATTGCAGAGTAGTCAC
1 GCCCACGCTCGTGTGCCCAGACCGTGTAACTCACTGTTTCTATTTCCAAATT-CAAAATACCCAC
* *
25680 ACGGTCTA
65 ACGCTCCA
* * * * *
25688 GCACACGCCCGTGTGCCCAAACCGTGTAACTCACTGTTTCTGTTTCACAAGTT-AAAATACCCAC
1 GCCCACGCTCGTGTGCCCAGACCGTGTAACTCACTGTTTCTATTTC-CAAATTCAAAATACCCAC
25752 ACGCTCCA
65 ACGCTCCA
* * * *
25760 GCCCACGCTCGTGGGCCCAGGCCGTGGAACTCACTATTTCTATTT
1 GCCCACGCTCGTGTGCCCAGACCGTGTAACTCACTGTTTCTATTT
25805 TCCATGACAC
Statistics
Matches: 94, Mismatches: 22, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
72 50 0.53
73 39 0.41
74 5 0.05
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (72 bp):
GCCCACGCTCGTGTGCCCAGACCGTGTAACTCACTGTTTCTATTTCCAAATTCAAAATACCCACA
CGCTCCA
Found at i:40379 original size:15 final size:16
Alignment explanation
Indices: 40359--40392 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
40349 AATCTTTTAA
40359 AAATTATAAAAAT-AT
1 AAATTATAAAAATGAT
*
40374 AAATTATTAAAATGAT
1 AAATTATAAAAATGAT
40390 AAA
1 AAA
40393 ATTTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATGAT
Found at i:41740 original size:31 final size:31
Alignment explanation
Indices: 41700--41759 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
41690 CAACCCAATA
*
41700 ACTTGAACAAAAA-ATTTCAAATAATTTAACG
1 ACTTAAACAAAAATA-TTCAAATAATTTAACG
*
41731 ACTTAAACAAAAATATTCAAATATTTTAA
1 ACTTAAACAAAAATATTCAAATAATTTAA
41760 TGATTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (31 bp):
ACTTAAACAAAAATATTCAAATAATTTAACG
Found at i:42587 original size:14 final size:13
Alignment explanation
Indices: 42554--42588 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
42544 AAAACGAAGG
42554 AAAAAG-GAAAGA
1 AAAAAGAGAAAGA
42566 AAAAAGAGAAAGA
1 AAAAAGAGAAAGA
42579 AAGAAAGAGA
1 AA-AAAGAGA
42589 GAAAGAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.29
13 8 0.38
14 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAAAGA
Found at i:42591 original size:16 final size:17
Alignment explanation
Indices: 42560--42595 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
42550 AAGGAAAAAG
42560 GAAAGAAAAAAGAGAAA
1 GAAAGAAAAAAGAGAAA
*
42577 GAAAG-AAAGAGAGAAA
1 GAAAGAAAAAAGAGAAA
42593 GAA
1 GAA
42596 GAAGGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAAGAGAAA
Found at i:42605 original size:14 final size:15
Alignment explanation
Indices: 42570--42640 Score: 63
Period size: 18 Copynumber: 4.5 Consensus size: 15
42560 GAAAGAAAAA
*
42570 AGAGAAAGAAAGAAAG
1 AGAGAAAG-AAGAAGG
42586 AGAGAAAGAAGAAGG
1 AGAGAAAGAAGAAGG
*
42601 A-AGAAGGAAGAAGG
1 AGAGAAAGAAGAAGG
*
42615 AGAAGAAGGAAAAGAAGG
1 AG-AGAA--AGAAGAAGG
42633 AGAAGAAA
1 AG-AGAAA
42641 AAAAAAGGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
14 13 0.28
15 7 0.15
16 13 0.28
18 14 0.30
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (15 bp):
AGAGAAAGAAGAAGG
Found at i:42621 original size:9 final size:9
Alignment explanation
Indices: 42592--42639 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
42582 AAAGAGAGAA
42592 AGAAGAA-G
1 AGAAGAAGG
42600 -GAAGAA-G
1 AGAAGAAGG
42607 -GAAGAAGG
1 AGAAGAAGG
42615 AGAAGAAGG
1 AGAAGAAGG
*
42624 AAAAGAAGG
1 AGAAGAAGG
42633 AGAAGAA
1 AGAAGAA
42640 AAAAAAAGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
7 13 0.36
8 1 0.03
9 22 0.61
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (9 bp):
AGAAGAAGG
Found at i:42643 original size:16 final size:16
Alignment explanation
Indices: 42572--42648 Score: 61
Period size: 16 Copynumber: 4.8 Consensus size: 16
42562 AAGAAAAAAG
*
42572 AGAAAGAAAGAAAGAG-
1 AGAAA-AAAGAAGGAGA
*
42588 AGAAAGAAGAA-G-GA
1 AGAAAAAAGAAGGAGA
**
42602 AGAAGGAAGAAGGAGA
1 AGAAAAAAGAAGGAGA
42618 AGAAGGAAAAGAAGGAGA
1 AGAA--AAAAGAAGGAGA
*
42636 AGAAAAAAAAAGG
1 AGAAAAAAGAAGG
42649 TAATGTGTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.02
14 11 0.22
15 6 0.12
16 19 0.37
18 14 0.27
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (16 bp):
AGAAAAAAGAAGGAGA
Found at i:42645 original size:18 final size:18
Alignment explanation
Indices: 42608--42645 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
42598 AGGAAGAAGG
**
42608 AAGAAGGAGAAGAAGGAA
1 AAGAAGGAGAAGAAAAAA
42626 AAGAAGGAGAAGAAAAAA
1 AAGAAGGAGAAGAAAAAA
42644 AA
1 AA
42646 AGGTAATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (18 bp):
AAGAAGGAGAAGAAAAAA
Found at i:43817 original size:24 final size:23
Alignment explanation
Indices: 43780--43827 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
43770 ATTGAATCGA
*
43780 TTTTTCTCTATTTTGTAAATATT
1 TTTTTCTCTATTTTATAAATATT
* *
43803 TTTTTTTCTATTTTTATGAATATT
1 TTTTTCTCTA-TTTTATAAATATT
43827 T
1 T
43828 AATAATTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTTCTCTATTTTATAAATATT
Found at i:48263 original size:18 final size:18
Alignment explanation
Indices: 48240--48278 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
48230 ATTGTTTATT
48240 TCTACACTTTTATGTATC
1 TCTACACTTTTATGTATC
48258 TCTACACTTTTATGTATC
1 TCTACACTTTTATGTATC
48276 TCT
1 TCT
48279 TTTTTTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (18 bp):
TCTACACTTTTATGTATC
Found at i:57216 original size:6 final size:6
Alignment explanation
Indices: 57199--57251 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
57189 GTACAAGCAC
* * * *
57199 GGATGA GAATGA GGATGA GGATGA GGACGA GGATGA GGACGA GGGTGA
1 GGATGA GGATGA GGATGA GGATGA GGATGA GGATGA GGATGA GGATGA
57247 GGATG
1 GGATG
57252 TTAAACCAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.32, C:0.04, G:0.51, T:0.13
Consensus pattern (6 bp):
GGATGA
Found at i:65879 original size:50 final size:50
Alignment explanation
Indices: 65781--65880 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 50
65771 TGAAAATAAA
* * *
65781 TTTAAATGTGTACATGTATATATATGTAAATAAATGTAAATATTAATTTC
1 TTTAAATGTGTACATGTATATATATATAAATAAATATAAATATAAATTTC
*
65831 TTTAAATGTGTACATGTATATATATATATATAAATAATAAAT-TAAATTTC
1 TTTAAATGTGTACATGTATATATATATAAATAAAT-ATAAATATAAATTTC
65881 ATATGTATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 40 0.89
51 5 0.11
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (50 bp):
TTTAAATGTGTACATGTATATATATATAAATAAATATAAATATAAATTTC
Found at i:69216 original size:58 final size:57
Alignment explanation
Indices: 69103--69222 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 57
69093 ACTCATCAAC
*
69103 AAACTAAATCCAAATATTTTTAAACCCAAATATAATTTCATTTTCCAAAAACACTCAT
1 AAACTAAATCCAAATATTTTTAAACCCAAATATAATTT-ATATTCCAAAAACACTCAT
*
69161 AAACTAAA-CCTAAATATTTTTAAACCCAAATATAATTT-TATTCCTAAATAGCACTCAT
1 AAACTAAATCC-AAATATTTTTAAACCCAAATATAATTTATATTCC-AAA-AACACTCAT
69219 AAAC
1 AAAC
69223 AATTTTTTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
56 5 0.09
57 5 0.09
58 47 0.82
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.33
Consensus pattern (57 bp):
AAACTAAATCCAAATATTTTTAAACCCAAATATAATTTATATTCCAAAAACACTCAT
Found at i:69577 original size:14 final size:11
Alignment explanation
Indices: 69548--69576 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
69538 TTTTATAATC
69548 TTGTTGTGTTA
1 TTGTTGTGTTA
69559 TTGTTGTGTTA
1 TTGTTGTGTTA
69570 TTGTTGT
1 TTGTTGT
69577 TACTTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.00, G:0.28, T:0.66
Consensus pattern (11 bp):
TTGTTGTGTTA
Found at i:70567 original size:9 final size:9
Alignment explanation
Indices: 70553--70582 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
70543 TTTTCGATGA
70553 ATCGTCATC
1 ATCGTCATC
70562 ATCGTCATC
1 ATCGTCATC
*
70571 ATCATCATC
1 ATCGTCATC
70580 ATC
1 ATC
70583 AATGTTTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33
Consensus pattern (9 bp):
ATCGTCATC
Found at i:72635 original size:12 final size:12
Alignment explanation
Indices: 72615--72649 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
72605 ACTAAGAAGC
*
72615 TATATATATATA
1 TATACATATATA
72627 TATACATATATA
1 TATACATATATA
*
72639 TACACATATAT
1 TATACATATAT
72650 GCATGTATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (12 bp):
TATACATATATA
Found at i:72641 original size:10 final size:10
Alignment explanation
Indices: 72615--72649 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
72605 ACTAAGAAGC
*
72615 TATATATATA
1 TATATACATA
72625 TATATACATA
1 TATATACATA
*
72635 TATATACACA
1 TATATACATA
72645 TATAT
1 TATAT
72650 GCATGTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (10 bp):
TATATACATA
Found at i:86544 original size:59 final size:59
Alignment explanation
Indices: 86479--86629 Score: 175
Period size: 59 Copynumber: 2.5 Consensus size: 59
86469 TTGAACTTAA
* *
86479 TATTTTTTTTAATTTGATATCTAAATTTTTTTGGGATCCAATTT-AGTACCTAAACTTGAC
1 TATTTTTTTTAATTTGGTA-CTAAATTTTTTTGAGATCCAATTTGA-TACCTAAACTTGAC
* * *
86539 -ATTTTTTCTTAAATTGGTACTCAAA-CTTTTTGAGATCCAATTTGATACTTAAACTTGAC
1 TATTTTTT-TTAATTTGGTACT-AAATTTTTTTGAGATCCAATTTGATACCTAAACTTGAC
*
86598 TCTTTTTTTTAATTTGGTACCT-AATTTTTTTG
1 TATTTTTTTTAATTTGGTA-CTAAATTTTTTTG
86630 TCCGATTTGG
Statistics
Matches: 77, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
58 2 0.03
59 54 0.70
60 21 0.27
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (59 bp):
TATTTTTTTTAATTTGGTACTAAATTTTTTTGAGATCCAATTTGATACCTAAACTTGAC
Found at i:87582 original size:23 final size:23
Alignment explanation
Indices: 87553--87600 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
87543 AAGTCCAACC
87553 ATATTATTTTGAAAAATTAAAAT
1 ATATTATTTTGAAAAATTAAAAT
* *
87576 ATATTATTTTTAAAATTTAAAAT
1 ATATTATTTTGAAAAATTAAAAT
87599 AT
1 AT
87601 TTAATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATTATTTTGAAAAATTAAAAT
Found at i:96645 original size:17 final size:17
Alignment explanation
Indices: 96602--96669 Score: 70
Period size: 17 Copynumber: 4.1 Consensus size: 17
96592 TGTCTGGACC
*
96602 TATTGGAAA-TTAAATT
1 TATTTGAAATTTAAATT
* *
96618 T-TTTTAAATTTAAGTT
1 TATTTGAAATTTAAATT
96634 TATTTGAAATTTAAATT
1 TATTTGAAATTTAAATT
*
96651 TATTAT-AAAATTAAATT
1 TATT-TGAAATTTAAATT
96668 TA
1 TA
96670 GAAAGTCCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
15 5 0.12
16 8 0.19
17 29 0.67
18 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (17 bp):
TATTTGAAATTTAAATT
Found at i:97295 original size:23 final size:21
Alignment explanation
Indices: 97253--97293 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97243 AATTACTGAT
*
97253 AAAAGTTCTATATATCTATAG
1 AAAAGTTCGATATATCTATAG
*
97274 AAAAGTTGGATATATCTATA
1 AAAAGTTCGATATATCTATA
97294 TAATTAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (21 bp):
AAAAGTTCGATATATCTATAG
Found at i:97331 original size:20 final size:22
Alignment explanation
Indices: 97306--97347 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
97296 ATTAATCTAT
97306 ATCTATA-TA-ATAATAATAAA
1 ATCTATACTATATAATAATAAA
97326 ATCTATATCTATATAATAATAA
1 ATCTATA-CTATATAATAATAA
97348 TAAAATAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
ATCTATACTATATAATAATAAA
Found at i:97334 original size:26 final size:26
Alignment explanation
Indices: 97299--97367 Score: 111
Period size: 26 Copynumber: 2.6 Consensus size: 26
97289 CTATATAATT
97299 AATCTATATCTATATAATAATAATAA
1 AATCTATATCTATATAATAATAATAA
97325 AATCTATATCTATATAATAATAATAA
1 AATCTATATCTATATAATAATAATAA
**
97351 AATAGATAATCTATATA
1 AATCTAT-ATCTATATA
97368 TCTATGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 31 0.77
27 9 0.22
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (26 bp):
AATCTATATCTATATAATAATAATAA
Found at i:97421 original size:14 final size:14
Alignment explanation
Indices: 97402--97430 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97392 TAGATAAATA
97402 ATAATCTATATAAC
1 ATAATCTATATAAC
97416 ATAATCTATATAAC
1 ATAATCTATATAAC
97430 A
1 A
97431 AAGTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:98375 original size:30 final size:30
Alignment explanation
Indices: 98331--98398 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
98321 AAATTTTAAA
*
98331 TTAATAAA-AATAAAA-TTATATTTTAATTTT
1 TTAA-AAATAATAAAATTTATA-TTTAATTCT
*
98361 TTAAAAATAATAAAATTTTTATTTAATTCT
1 TTAAAAATAATAAAATTTATATTTAATTCT
98391 TTAAAAAT
1 TTAAAAAT
98399 TATATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 3 0.09
30 27 0.79
31 4 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAAAAATAATAAAATTTATATTTAATTCT
Found at i:104972 original size:15 final size:15
Alignment explanation
Indices: 104952--105030 Score: 81
Period size: 15 Copynumber: 5.4 Consensus size: 15
104942 ATCACTAGAT
104952 TGAACTTATTATATG
1 TGAACTTATTATATG
*
104967 TGAAC-TATTGTATG
1 TGAACTTATTATATG
*
104981 TGAACTAATTATATG
1 TGAACTTATTATATG
* *
104996 TGAAC-TATTGTATA
1 TGAACTTATTATATG
* * *
105010 CGAACTGATTATGTG
1 TGAACTTATTATATG
105025 TGAACT
1 TGAACT
105031 GTTATATACG
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
14 23 0.46
15 27 0.54
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (15 bp):
TGAACTTATTATATG
Found at i:105031 original size:15 final size:14
Alignment explanation
Indices: 104952--105037 Score: 91
Period size: 14 Copynumber: 5.9 Consensus size: 14
104942 ATCACTAGAT
104952 TGAACTTATTATATG
1 TGAAC-TATTATATG
*
104967 TGAACTATTGTATG
1 TGAACTATTATATG
104981 TGAACTAATTATATG
1 TGAACT-ATTATATG
* *
104996 TGAACTATTGTATA
1 TGAACTATTATATG
* *
105010 CGAACTGATTATGTG
1 TGAACT-ATTATATG
*
105025 TGAACTGTTATAT
1 TGAACTATTATAT
105038 ACGATTTGTT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 30 0.52
15 28 0.48
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (14 bp):
TGAACTATTATATG
Found at i:105038 original size:29 final size:29
Alignment explanation
Indices: 104953--105146 Score: 122
Period size: 29 Copynumber: 6.7 Consensus size: 29
104943 TCACTAGATT
* * **
104953 GAACTTATTATATGTGAACTATTGTATGT
1 GAACTGATTATGTGTGAACTATTGTATAC
* *
104982 GAACTAATTATATGTGAACTATTGTATAC
1 GAACTGATTATGTGTGAACTATTGTATAC
* *
105011 GAACTGATTATGTGTGAACTGTTATATAC
1 GAACTGATTATGTGTGAACTATTGTATAC
** * * *** *
105040 GATTTGTTTATGTGTGAACTGTAACATGC
1 GAACTGATTATGTGTGAACTATTGTATAC
* * *
105069 -ATACT-ATTTATGTGTGAACTGTTGTGTGC
1 GA-ACTGA-TTATGTGTGAACTATTGTATAC
* * * *
105098 AAACTGTTTAAGTGTGAACTATTGTATAT
1 GAACTGATTATGTGTGAACTATTGTATAC
* * *
105127 GAACCGTTTATGTGAGAACT
1 GAACTGATTATGTGTGAACT
105147 CATATATTCG
Statistics
Matches: 131, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
28 1 0.01
29 129 0.98
30 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (29 bp):
GAACTGATTATGTGTGAACTATTGTATAC
Found at i:111798 original size:22 final size:23
Alignment explanation
Indices: 111771--111813 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
111761 CAAAAGAACC
*
111771 AAAAGAAATAA-TAAAGCCTAGG
1 AAAAGAAATAACTAAAACCTAGG
111793 AAAAGAAATAACTAAAACCTA
1 AAAAGAAATAACTAAAACCTA
111814 AATATAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.12, G:0.12, T:0.14
Consensus pattern (23 bp):
AAAAGAAATAACTAAAACCTAGG
Found at i:119314 original size:14 final size:15
Alignment explanation
Indices: 119295--119323 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
119285 GAAATCAAAC
119295 ATAAAAT-CGATAGA
1 ATAAAATACGATAGA
119309 ATAAAATACGATAGA
1 ATAAAATACGATAGA
119324 GTAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.21
Consensus pattern (15 bp):
ATAAAATACGATAGA
Found at i:119511 original size:59 final size:57
Alignment explanation
Indices: 119406--119567 Score: 157
Period size: 59 Copynumber: 2.8 Consensus size: 57
119396 GATACCTGGG
* * * * * * * *
119406 GGTAAAACAATAATTTTGGAGGTTCAAGGTCAAAAATGAAAGTTTTGGACATTCG-A
1 GGTAAAATAGTAATTTTGGAAGTTCGAGGTAAAAAATGGAATTTTTGGACATCCGAA
* * * *
119462 GGTTAAAAT-GATGATTTTTGATTAGTTCGGGGTAAAAAATGGTATTTTTGGACATCCGAA
1 GG-TAAAATAG-TAATTTTGGA--AGTTCGAGGTAAAAAATGGAATTTTTGGACATCCGAA
*
119522 GGTAAAATAGTAATTTTGGAAGTTCGAGGTCAAAAATGGAATTTTT
1 GGTAAAATAGTAATTTTGGAAGTTCGAGGTAAAAAATGGAATTTTT
119568 AACAATTCGG
Statistics
Matches: 83, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
56 2 0.02
57 36 0.43
59 41 0.49
60 4 0.05
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (57 bp):
GGTAAAATAGTAATTTTGGAAGTTCGAGGTAAAAAATGGAATTTTTGGACATCCGAA
Found at i:119557 original size:29 final size:28
Alignment explanation
Indices: 119416--119566 Score: 87
Period size: 28 Copynumber: 5.2 Consensus size: 28
119406 GGTAAAACAA
* *
119416 TAATTTTGGA-GGTTCAAGGTCAAAAATG
1 TAATTTTGGACAGTTCGAGGT-AAAAATG
* *
119444 AAAGTTTTGGACA-TTCGAGGTTAAAATG
1 TAA-TTTTGGACAGTTCGAGGTAAAAATG
* * * *
119472 ATGATTTTTGATTAGTTCGGGGTAAAAAATGG
1 -TAATTTTGGA-CAGTTCGAGGT-AAAAAT-G
* *
119504 TATTTTTGGACA-TCCGAAGGT-AAAATAG
1 TAATTTTGGACAGTTCG-AGGTAAAAAT-G
119532 TAATTTTGGA-AGTTCGAGGTCAAAAATG
1 TAATTTTGGACAGTTCGAGGT-AAAAATG
*
119560 GAATTTT
1 TAATTTT
119567 TAACAATTCG
Statistics
Matches: 92, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
27 5 0.05
28 39 0.42
29 24 0.26
30 11 0.12
31 12 0.13
32 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.25, T:0.34
Consensus pattern (28 bp):
TAATTTTGGACAGTTCGAGGTAAAAATG
Found at i:119567 original size:29 final size:29
Alignment explanation
Indices: 119419--119595 Score: 84
Period size: 29 Copynumber: 6.1 Consensus size: 29
119409 AAAACAATAA
* * * *
119419 TTTTGGA-GGTTCAAGGTCAAAAATGAAAG
1 TTTTGGACAGTTCGAGGT-AAAAATGGAAT
*
119448 TTTTGGACA-TTCGAGGTTAAAAT-GATGAT
1 TTTTGGACAGTTCGAGGTAAAAATGGA--AT
* * *
119477 TTTT-GATTAGTTCGGGGTAAAAAATGGTAT
1 TTTTGGA-CAGTTCGAGGT-AAAAATGGAAT
* *
119507 TTTTGGACA-TCCGAAGGT-AAAATAGTAA-
1 TTTTGGACAGTTCG-AGGTAAAAAT-GGAAT
119535 TTTTGGA-AGTTCGAGGTCAAAAATGGAAT
1 TTTTGGACAGTTCGAGGT-AAAAATGGAAT
* * * *
119564 TTTT-AACAATTCGGGGATAAAAATAGAAT
1 TTTTGGACAGTTCGAGG-TAAAAATGGAAT
119593 TTT
1 TTT
119596 AGGTGTTCAA
Statistics
Matches: 112, Mismatches: 20, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
27 6 0.05
28 26 0.23
29 54 0.48
30 18 0.16
31 7 0.06
32 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.34
Consensus pattern (29 bp):
TTTTGGACAGTTCGAGGTAAAAATGGAAT
Found at i:119672 original size:30 final size:29
Alignment explanation
Indices: 119640--119785 Score: 165
Period size: 30 Copynumber: 5.0 Consensus size: 29
119630 ACTCAGATTA
119640 AAAAATAG-AATTTTTAGAAA-TTTAGGGAT
1 AAAAAT-GTAATTTTTAGAAAGTTTAGGG-T
119669 AAAAATGTAATTTTT-GTAAAGTTTAGGGT
1 AAAAATGTAATTTTTAG-AAAGTTTAGGGT
*
119698 AAAAATGTAATTTTTGGAAAGTTTAAGGGT
1 AAAAATGTAATTTTTAGAAAGTTT-AGGGT
*
119728 TAAAATGTAATTTTTAGAAAGTTTTAGGGT
1 AAAAATGTAATTTTTAGAAAG-TTTAGGGT
* * *
119758 CAAAATATGATTTTT-GAATAGTTTAGGG
1 AAAAATGTAATTTTTAGAA-AGTTTAGGG
119786 ACCTTTTAGG
Statistics
Matches: 105, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
28 2 0.02
29 49 0.47
30 51 0.49
31 3 0.03
ACGTcount: A:0.40, C:0.01, G:0.21, T:0.39
Consensus pattern (29 bp):
AAAAATGTAATTTTTAGAAAGTTTAGGGT
Found at i:119701 original size:59 final size:59
Alignment explanation
Indices: 119640--119786 Score: 171
Period size: 59 Copynumber: 2.5 Consensus size: 59
119630 ACTCAGATTA
119640 AAAAATAGAATTTTTAGAAA-TTTAGGGATAAAAATGTAATTTTT-GTAAAG-TTTAGGGT
1 AAAAATAGAATTTTT-GAAAGTTTAGGGATAAAAATGTAATTTTTAG-AAAGTTTTAGGGT
*
119698 AAAAAT-GTAATTTTTGGAAAGTTTAAGGG-TTAAAATGTAATTTTTAGAAAGTTTTAGGGT
1 AAAAATAG-AATTTTT-GAAAGTTT-AGGGATAAAAATGTAATTTTTAGAAAGTTTTAGGGT
*
119758 CAAAATATG-ATTTTTGAATAGTTTAGGGA
1 AAAAATA-GAATTTTTGAA-AGTTTAGGGA
119787 CCTTTTAGGC
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
57 1 0.01
58 17 0.22
59 29 0.38
60 29 0.38
62 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.20, T:0.39
Consensus pattern (59 bp):
AAAAATAGAATTTTTGAAAGTTTAGGGATAAAAATGTAATTTTTAGAAAGTTTTAGGGT
Found at i:121652 original size:17 final size:16
Alignment explanation
Indices: 121630--121728 Score: 72
Period size: 17 Copynumber: 5.9 Consensus size: 16
121620 GTATTTGGAC
*
121630 ATTTTAAATTTAATTTA
1 ATTTTAAATTTAA-ATA
* *
121647 ATTTTAAGTTTAAAACA
1 ATTTTAAATTT-AAATA
*
121664 ATTTTAAATTTAACTA
1 ATTTTAAATTTAAATA
* * *
121680 AATTTAAATTCAAAACA
1 ATTTTAAATT-TAAATA
* *
121697 AATTTAAATTTAAAAAA
1 ATTTTAAATTT-AAATA
*
121714 AATTTAAATTTAAAT
1 ATTTTAAATTTAAAT
121729 CTAAAATAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
16 15 0.23
17 49 0.74
18 2 0.03
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (16 bp):
ATTTTAAATTTAAATA
Found at i:121675 original size:6 final size:6
Alignment explanation
Indices: 121632--121762 Score: 69
Period size: 6 Copynumber: 23.0 Consensus size: 6
121622 ATTTGGACAT
* * ** *
121632 TTTAAA TTT-AA TTTAAT TTTAAG TTTAAA -ACAAT TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * ** **
121677 -CTAAA TTTAAA TTCAAA -ACAAA TTTAAA TTTAAA -AAAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * **
121722 TTTAAA TCTAAA -ATAAA TTTAAA TTCAAA AATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
121763 ACCAATTTAA
Statistics
Matches: 90, Mismatches: 28, Indels: 14
0.68 0.21 0.11
Matches are distributed among these distances:
4 1 0.01
5 22 0.24
6 67 0.74
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:121704 original size:23 final size:21
Alignment explanation
Indices: 121678--121746 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 21
121668 TAAATTTAAC
121678 TAAATTTAAATTCAAAACAAATT
1 TAAATTTAAA-TCAAAA-AAATT
121701 TAAATTT--A--AAAAAAATT
1 TAAATTTAAATCAAAAAAATT
121718 TAAATTTAAATCTAAAATAAATT
1 TAAATTTAAATC-AAAA-AAATT
121741 TAAATT
1 TAAATT
121747 CAAAAATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
17 12 0.30
18 4 0.10
19 1 0.03
21 1 0.03
22 4 0.10
23 18 0.45
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATTTAAATCAAAAAAATT
Found at i:121738 original size:17 final size:18
Alignment explanation
Indices: 121678--121762 Score: 84
Period size: 17 Copynumber: 4.6 Consensus size: 18
121668 TAAATTTAAC
121678 TAAATTTAAATTC-AAAA
1 TAAATTTAAATTCAAAAA
* *
121695 CAAATTTAAATTTAAAAA
1 TAAATTTAAATTCAAAAA
*
121713 -AAATTTAAATTTAAATCTAAAA
1 TAAATTTAAA--T---TCAAAAA
121735 TAAATTTAAATTCAAAAA
1 TAAATTTAAATTCAAAAA
121753 TAAATTTAAA
1 TAAATTTAAA
121763 ACCAATTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
17 20 0.36
18 20 0.36
19 1 0.02
21 1 0.02
22 5 0.09
23 9 0.16
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATTTAAATTCAAAAA
Found at i:121756 original size:23 final size:23
Alignment explanation
Indices: 121707--121756 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121697 AATTTAAATT
* **
121707 TAAAAAAAATTTAAATTTAAATC
1 TAAAAAAAATTTAAATTCAAAAA
*
121730 TAAAATAAATTTAAATTCAAAAA
1 TAAAAAAAATTTAAATTCAAAAA
121753 TAAA
1 TAAA
121757 TTTAAAACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAAAAAAATTTAAATTCAAAAA
Found at i:132699 original size:31 final size:33
Alignment explanation
Indices: 132645--132728 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 33
132635 ATAGTTTATA
*
132645 TTTTTA-TAATTTTTAAAAAATT-AAAT-TAAT
1 TTTTTATTATTTTTTAAAAAATTAAAATATAAT
* *
132675 TTTTTATTATTTTTTAAGAGATTAAAATATAAT
1 TTTTTATTATTTTTTAAAAAATTAAAATATAAT
* *
132708 TTTATCATTATTAATTTAAAA
1 TTT-TTATTATT-TTTTAAAA
132729 TTTTATAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
30 6 0.14
31 13 0.30
32 4 0.09
33 7 0.16
34 7 0.16
35 6 0.14
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (33 bp):
TTTTTATTATTTTTTAAAAAATTAAAATATAAT
Found at i:133037 original size:6 final size:6
Alignment explanation
Indices: 133026--133050 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
133016 CATCTTAATA
133026 TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
133051 CATCAATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:133930 original size:14 final size:14
Alignment explanation
Indices: 133913--133943 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
133903 AATTTATTTT
*
133913 TATATAAAAATTAA
1 TATAAAAAAATTAA
133927 TATAAAAAAATTAA
1 TATAAAAAAATTAA
133941 TAT
1 TAT
133944 GAGCCAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TATAAAAAAATTAA
Found at i:145716 original size:14 final size:16
Alignment explanation
Indices: 145697--145728 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
145687 TTTTTTTTAT
145697 TTAA-TTAAAAT-TAA
1 TTAATTTAAAATATAA
145711 TTAATTTAAAATATAA
1 TTAATTTAAAATATAA
145727 TT
1 TT
145729 TATCCTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 7 0.44
16 5 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAATTTAAAATATAA
Found at i:145843 original size:20 final size:19
Alignment explanation
Indices: 145805--145843 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
145795 ATGTTTTTTT
*
145805 AATTAATTTCTATTTTAAA
1 AATTAATTTCTACTTTAAA
*
145824 AATTAATTTATTACTTTAAA
1 AATTAATTT-CTACTTTAAA
145844 TTGATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTAATTTCTACTTTAAA
Found at i:149056 original size:11 final size:11
Alignment explanation
Indices: 149040--149090 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
149030 TTTTTAATTG
149040 TTATTTTGTTA
1 TTATTTTGTTA
*
149051 TTATTTCGTTA
1 TTATTTTGTTA
*
149062 TTGTTTTGTT-
1 TTATTTTGTTA
*
149072 TTCATTTTGTTG
1 TT-ATTTTGTTA
149084 TTATTTT
1 TTATTTT
149091 ATTGAAATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 2 0.06
11 30 0.88
12 2 0.06
ACGTcount: A:0.12, C:0.04, G:0.12, T:0.73
Consensus pattern (11 bp):
TTATTTTGTTA
Found at i:149090 original size:22 final size:22
Alignment explanation
Indices: 149037--149090 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
149027 TTTTTTTTAA
149037 TTGTTATTTTGTTATTATTTCG
1 TTGTTATTTTGTTATTATTTCG
* * *
149059 TTATTGTTTTGTT-TTCATTTTG
1 TTGTTATTTTGTTATT-ATTTCG
149081 TTGTTATTTT
1 TTGTTATTTT
149091 ATTGAAATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.11, C:0.04, G:0.13, T:0.72
Consensus pattern (22 bp):
TTGTTATTTTGTTATTATTTCG
Found at i:158372 original size:24 final size:22
Alignment explanation
Indices: 158340--158386 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
158330 ATTCGATTTG
158340 ATTTAAATTAAATTTAATAAAATT
1 ATTTAAATTAAA-TTAA-AAAATT
*
158364 ATTTGAATTAAATTAAAAAATT
1 ATTTAAATTAAATTAAAAAATT
158386 A
1 A
158387 AACATGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.32
23 4 0.18
24 11 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTAAATTAAATTAAAAAATT
Found at i:158671 original size:21 final size:21
Alignment explanation
Indices: 158645--158692 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
158635 AGATATTTGG
158645 TTTTTTAAAAATTATTTTAAAT
1 TTTTTTAAAAATT-TTTTAAAT
**
158667 TTTTTTTGAAATTTTTTAAAT
1 TTTTTTAAAAATTTTTTAAAT
158688 TTTTT
1 TTTTT
158693 ATTGAGAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTAAAAATTTTTTAAAT
Found at i:158678 original size:22 final size:22
Alignment explanation
Indices: 158653--158697 Score: 74
Period size: 21 Copynumber: 2.0 Consensus size: 22
158643 GGTTTTTTAA
158653 AAATTATTTTAAATTTTTT-TTG
1 AAATT-TTTTAAATTTTTTATTG
158675 AAATTTTTTAAATTTTTTATTG
1 AAATTTTTTAAATTTTTTATTG
158697 A
1 A
158698 GAGACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
AAATTTTTTAAATTTTTTATTG
Found at i:159924 original size:27 final size:28
Alignment explanation
Indices: 159869--159924 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
159859 TTTATATTCA
**
159869 ATAATTTAACTTACAAATTTTTTTGAAT
1 ATAATTTAACTTACAAATTTTCATGAAT
159897 ATAATTTAACTTAC-AATTTTACAT-AAT
1 ATAATTTAACTTACAAATTTT-CATGAAT
159924 A
1 A
159925 AGTTACAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (28 bp):
ATAATTTAACTTACAAATTTTCATGAAT
Found at i:160008 original size:18 final size:18
Alignment explanation
Indices: 159985--160020 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
159975 TTATTTTTAC
159985 AAATT-AAATACACTATTT
1 AAATTAAAATACA-TATTT
160003 AAATTAAAATACATATTT
1 AAATTAAAATACATATTT
160021 TTTTTAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAAAATACATATTT
Found at i:165582 original size:132 final size:132
Alignment explanation
Indices: 165189--165584 Score: 558
Period size: 132 Copynumber: 3.0 Consensus size: 132
165179 ATTTTGAGAT
* * * * *
165189 TTACAGGTTATATAGGTGTTGGTCTTGGATGTCCTACCGATAGTTGAGATCCGGCATTTGTTGCG
1 TTACAGGTTATATGGGTATTGGTCTTGGATGTCCTACTGATGGTTGAGATCCGACATTTGTTGCG
* * * * * *
165254 GATTCTCCATAACTCGTGTAAGCAGCATCATGTAGCCTAACATCTCGACCTACAACTTGTGTGAA
66 GATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCTACAACTCGTGTGAG
165319 CA
131 CA
* ** * * *
165321 TTACAGGTTATATGGGTATTGGTCTTGGATGCCCTACTGATGCCTAAGATCCAACATTTGTTACG
1 TTACAGGTTATATGGGTATTGGTCTTGGATGTCCTACTGATGGTTGAGATCCGACATTTGTTGCG
*
165386 GATTCTCCACAGCTCGTGTGAGCAGCATCGTATAGCCTAACATCTCGACCTACAACTCGTGTGAG
66 GATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCTACAACTCGTGTGAG
165451 CA
131 CA
* * *
165453 TTACAGGTTATATGGGTACTGGTCTTAGATGTCCTATTGATGGTTGAGATCCGACATTTGTTGCG
1 TTACAGGTTATATGGGTATTGGTCTTGGATGTCCTACTGATGGTTGAGATCCGACATTTGTTGCG
* * * * *
165518 GATTCTCCACAGCTCATGTGAGCAACATCGTGTAGTCTAACATCTCGACCCACACCTCGTGTGAG
66 GATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCTACAACTCGTGTGAG
165583 CA
131 CA
165585 GCATCGTGTA
Statistics
Matches: 231, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 231 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (132 bp):
TTACAGGTTATATGGGTATTGGTCTTGGATGTCCTACTGATGGTTGAGATCCGACATTTGTTGCG
GATTCTCCACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCTACAACTCGTGTGAG
CA
Found at i:165590 original size:43 final size:43
Alignment explanation
Indices: 165524--165628 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
165514 TGCGGATTCT
* *
165524 CCACAGCTCATGTGAGCAACATCGTGTAGTCTAACATCTCGAC
1 CCACAGCTCGTGTGAGCAGCATCGTGTAGTCTAACATCTCGAC
*
165567 CCACACCTCGTGTGAGCAGCATCGTGTAGTCTAACATCTCGAC
1 CCACAGCTCGTGTGAGCAGCATCGTGTAGTCTAACATCTCGAC
165610 CCACAGCTCGTGTGAGCAG
1 CCACAGCTCGTGTGAGCAG
165629 GCCCATTTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (43 bp):
CCACAGCTCGTGTGAGCAGCATCGTGTAGTCTAACATCTCGAC
Found at i:168345 original size:120 final size:119
Alignment explanation
Indices: 168167--168478 Score: 351
Period size: 120 Copynumber: 2.6 Consensus size: 119
168157 TTGCCATTGC
* * * * *
168167 ATGGCCGACACTCCTT-TTTATCTGATAAAAAAAAAAAAAATTTTGGGTATTGGCCATGCAATGG
1 ATGGCCGACAC-CCTTATTTATTTG--AAAAAAAATAAAATTTTTGGGTGTTGGTCATGCAATGG
* * **** * *
168231 CTGACACCCCTTTTTTGTCA-A-AAATTTTTTTTAAATTTTTTTAGTGTTGGTCATGCA
63 CCGACACCCCATTTTT-TCAGATAAAAAAATTTCAAAATTTTTT-GTGTTGGTCATGCA
* *
168288 ATGGCCGACACCCTTATTTATTTGACAAAAAAATTAAATTTTTGGGTGTTGGTCATGCAATGACC
1 ATGGCCGACACCCTTATTTATTTGA-AAAAAAATAAAATTTTTGGGTGTTGGTCATGCAATGGCC
* **
168353 AACACTTTCATTTTTTCAGATAAAAAAATTTCAAAATTTTTTGTGTTGGTCATGCA
65 GACAC-CCCATTTTTTCAGATAAAAAAATTTCAAAATTTTTTGTGTTGGTCATGCA
* * *
168409 ATGACCGACACCCTTATTTATTTGATAAAAAATCAAATTTTTGGGTGTTGGTCATGCAATGGCCG
1 ATGGCCGACACCCTTATTTATTTGAAAAAAAATAAAATTTTTGGGTGTTGGTCATGCAATGGCCG
168474 ACACC
66 ACACC
168479 TATGTATTTT
Statistics
Matches: 162, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
119 1 0.01
120 83 0.51
121 63 0.39
122 15 0.09
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (119 bp):
ATGGCCGACACCCTTATTTATTTGAAAAAAAATAAAATTTTTGGGTGTTGGTCATGCAATGGCCG
ACACCCCATTTTTTCAGATAAAAAAATTTCAAAATTTTTTGTGTTGGTCATGCA
Found at i:168409 original size:62 final size:60
Alignment explanation
Indices: 168274--168478 Score: 269
Period size: 58 Copynumber: 3.4 Consensus size: 60
168264 AATTTTTTTA
* *
168274 GTGTTGGTCATGCAATGGCCGACACCCTTATTTATTTGACAAAAAAATT-AAATTTTTGG
1 GTGTTGGTCATGCAATGACCGACACCCTTATTTATTTGATAAAAAAATTCAAATTTTTGG
* * *
168333 GTGTTGGTCATGCAATGACCAACA-CTTTCATTT-TTTCAGATAAAAAAATTTCAAAATTTTT-T
1 GTGTTGGTCATGCAATGACCGACACCCTT-ATTTATTT--GATAAAAAAA-TTC-AAATTTTTGG
168395 GTGTTGGTCATGCAATGACCGACACCCTTATTTATTTGAT-AAAAAA-TCAAATTTTTGG
1 GTGTTGGTCATGCAATGACCGACACCCTTATTTATTTGATAAAAAAATTCAAATTTTTGG
*
168453 GTGTTGGTCATGCAATGGCCGACACC
1 GTGTTGGTCATGCAATGACCGACACC
168479 TATGTATTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
57 8 0.06
58 33 0.26
59 26 0.20
60 15 0.12
61 5 0.04
62 27 0.21
63 14 0.11
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (60 bp):
GTGTTGGTCATGCAATGACCGACACCCTTATTTATTTGATAAAAAAATTCAAATTTTTGG
Found at i:168682 original size:60 final size:60
Alignment explanation
Indices: 168603--169025 Score: 353
Period size: 61 Copynumber: 6.9 Consensus size: 60
168593 AAAAAAAATT
** * **
168603 GGTGTT-GCCATTGC-ATGGCCGACACTTCTTTTTATCTGATAAAAAAAATCAAATTTTTA
1 GGTGTTGGCCA-TGCAATGGCCGACACCCCTTTTTATCAGATAAAAAATTTCAAATTTTTA
* *
168662 GGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTGTCAGA-AAAAAATTTAAAATTTTTTTA
1 GGTGTTGGCCATGCAATGGCCGACA-CCCCTTTTTATCAGATAAAAAATTTCAAA--TTTTTA
* * * ** *
168724 -GTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGATAAAAAAAATCATATTTTT-
1 GGTGTTGGCCATGCAATGGCCGACACCCCTTTTTATCAGATAAAAAATTTCAAATTTTTA
* * * * * *
168782 GGTTGTTGGTCATGTAATGACCGACACTCCCTTTTTTTCAGATAAAAAATTTCAATTTTTTTT
1 GG-TGTTGGCCATGCAATGGCCGACAC-CCCTTTTTATCAGATAAAAAATTTCAA-ATTTTTA
* * *
168845 TGTGTTAGCCATGCAATGGCCGACACCCCATTTTT-TCAGATAAAAAATTTCAAAATTTTTT
1 GGTGTTGGCCATGCAATGGCCGACACCCC-TTTTTATCAGATAAAAAATTTC-AAATTTTTA
* ** * *
168906 GATGTTGGCCATGCAATGATCGATA-CCC-TTTT-TCAGATAAAAAAATTTCAAATTTTCTTTTT
1 GGTGTTGGCCATGCAATGGCCGACACCCCTTTTTATCAGAT-AAAAAATTTCAAA---T-TTTTA
* * *
168968 TGTGTTGGCCATGCAATGGTCGACACCCCCTTTTT-GCAGATAAAAAAATTTTCAAATT
1 GGTGTTGGCCATGCAATGGCCGACA-CCCCTTTTTATCAGAT-AAAAAA-TTTCAAATT
169026 GTTTTTACAG
Statistics
Matches: 299, Mismatches: 43, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
58 13 0.04
59 25 0.08
60 59 0.20
61 109 0.36
62 65 0.22
63 2 0.01
64 3 0.01
65 16 0.05
66 7 0.02
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (60 bp):
GGTGTTGGCCATGCAATGGCCGACACCCCTTTTTATCAGATAAAAAATTTCAAATTTTTA
Found at i:168870 original size:451 final size:453
Alignment explanation
Indices: 167994--168923 Score: 1379
Period size: 450 Copynumber: 2.1 Consensus size: 453
167984 AAATTTGTGT
167994 TTTTTTGGTGTTGGCCATGCAATGGCCGACACCTATGTATTTTTTTTAAAACGGTATTTTATTGA
1 TTTTTTGGTGTTGGCCATGCAATGGCCGACACCTATGTATTTTTTTTAAAACGGTATTTTATTGA
*
168059 TATATGAAAATACTAAAATTTGAAAAAAAAAAATTTGGTGTTGGCCATAAAATGGTCAACACCCC
66 TATATGAAAATACTAAAATTTGAAAAAAAAAAATTTGGTGTTGGCCATAAAATGGTCAACACCCA
*
168124 CTTTTTTATCTGACAGGAAAAAAAAAATTGGTGTTGCCATTGCATGGCCGACACTCCTTTTTATC
131 CTTTTTTATCTAACAGGAAAAAAAAAATTGGTGTTGCCATTGCATGGCCGACACTCCTTTTTATC
* * *
168189 TGATAAAAAAAAAAAAAATTTTGGGTATTGGCCATGCAATGGCTGACACCCCTTTTTTGTCAAAA
196 TGATAAAAAAAAAAAAAATTTTAGGTATTGGCCATGCAATGGCCGACACCCCCTTTTTGTCAAAA
*** * * * * * *
168254 ATTTTTTTTAAATTTTTTTAGTGTTGGTCATGCAATGGCCGACACCCTTATTTATTTGACAAAAA
261 ATAAATTTAAAATTTTTTTAGTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGAAAAAAA
* **
168319 AATTAAATTTTTGGGTGTTGGTCATGCAATGACCAACACTTTCATTTTTTCAGATAAAAAAATTT
326 AATCAAATTTTTGGGTGTTGGTCATGCAATGACCAACACTCCCATTTTTTCAGATAAAAAAATTT
* * *
168384 CAAAATTTTTTGTGTTGGTCATGCAATGACCGACACCCTTATTTATTT-GATAAAAAA-TC-AAA
391 CAAAATTTTTTGTGTTAGCCATGCAATGACCGACACCC-CATTT-TTTAGATAAAAAATTCAAAA
* * *
168446 TTTTTGGGTGTTGGTCATGCAATGGCCGACACCTATGTATTTTTTTTAAAATGGTATTTTATTGA
1 TTTTTTGGTGTTGGCCATGCAATGGCCGACACCTATGTATTTTTTTTAAAACGGTATTTTATTGA
* * * *
168511 TATATGAAAATACTAAAATTTG-AAAAAAGAATTTTGGTGTTGGCCATACAATGGTCGACACCCA
66 TATATGAAAATACTAAAATTTGAAAAAAAAAAATTTGGTGTTGGCCATAAAATGGTCAACACCCA
*
168575 CTTTTTTATCTAACAGG-AAAAAAAAATTGGTGTTGCCATTGCATGGCCGACACTTCTTTTTATC
131 CTTTTTTATCTAACAGGAAAAAAAAAATTGGTGTTGCCATTGCATGGCCGACACTCCTTTTTATC
** * *
168639 TGATAAAAAAAATCAAATTTTTAGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTGTCAGAA
196 TGATAAAAAAAAAAAAAATTTTAGGTATTGGCCATGCAATGGCCGACACCCCCTTTTTGTCA-AA
168704 AA-AAATTTAAAATTTTTTTAGTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGATAAAA
260 AATAAATTTAAAATTTTTTTAGTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGA-AAAA
* * * * *
168768 AAAATCATATTTTTGGTTGTTGGTCATGTAATGACCGACACTCCCTTTTTTTCAGAT-AAAAAAT
324 AAAATCAAATTTTTGGGTGTTGGTCATGCAATGACCAACACTCCCATTTTTTCAGATAAAAAAAT
** *
168832 TTCAATTTTTTTTTGTGTTAGCCATGCAATGGCCGACACCCCATTTTTTCAGATAAAAAATTTCA
389 TTCAA-AATTTTTTGTGTTAGCCATGCAATGACCGACACCCCATTTTTT-AGATAAAAAA-TTCA
168897 AAA
451 AAA
*
168900 TTTTTTGATGTTGGCCATGCAATG
1 TTTTTTGGTGTTGGCCATGCAATG
168924 ATCGATACCC
Statistics
Matches: 427, Mismatches: 43, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
449 3 0.01
450 166 0.39
451 148 0.35
452 84 0.20
453 2 0.00
454 24 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (453 bp):
TTTTTTGGTGTTGGCCATGCAATGGCCGACACCTATGTATTTTTTTTAAAACGGTATTTTATTGA
TATATGAAAATACTAAAATTTGAAAAAAAAAAATTTGGTGTTGGCCATAAAATGGTCAACACCCA
CTTTTTTATCTAACAGGAAAAAAAAAATTGGTGTTGCCATTGCATGGCCGACACTCCTTTTTATC
TGATAAAAAAAAAAAAAATTTTAGGTATTGGCCATGCAATGGCCGACACCCCCTTTTTGTCAAAA
ATAAATTTAAAATTTTTTTAGTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGAAAAAAA
AATCAAATTTTTGGGTGTTGGTCATGCAATGACCAACACTCCCATTTTTTCAGATAAAAAAATTT
CAAAATTTTTTGTGTTAGCCATGCAATGACCGACACCCCATTTTTTAGATAAAAAATTCAAAA
Found at i:168983 original size:123 final size:121
Alignment explanation
Indices: 168604--169015 Score: 455
Period size: 121 Copynumber: 3.4 Consensus size: 121
168594 AAAAAAATTG
** * *
168604 GTGTT-GCCATTGC-ATGGCCGACACTTCTTTTTATCTGATAAAAAAAATCAAATTTTTAGGTGT
1 GTGTTAGCCA-TGCAATGGCCGACACCCCTTTTT-TCAGATAAAAAAAATCAAATTTTTAGATGT
* * *
168667 TGGCCATGCAATGGCCGACACCCCCTTTTTGTCAG--AAAAAAATTT-AAAATTTTTTTA
64 TGGCCATGCAATGACCGACA-CCCCTTTTT-TCAGATAAAAAAATTTCAAATTTTTTTTT
* * * * *
168724 GTGTTAGCCATGCAATGGCCGACACCCCTATTTATCTGATAAAAAAAATCATATTTTTGGTTGTT
1 GTGTTAGCCATGCAATGGCCGACACCCCT-TTTTTCAGATAAAAAAAATCAAATTTTTAGATGTT
* *
168789 GGTCATGTAATGACCGACACTCCCTTTTTTTCAGAT-AAAAAATTTC-AATTTTTTTTT
65 GGCCATGCAATGACCGACAC-CCC-TTTTTTCAGATAAAAAAATTTCAAATTTTTTTTT
** *
168846 GTGTTAGCCATGCAATGGCCGACACCCCATTTTTTCAGATAAAAAATTTCAAAATTTTTTGATGT
1 GTGTTAGCCATGCAATGGCCGACACCCC-TTTTTTCAGATAAAAAAAATC-AAATTTTTAGATGT
* *
168911 TGGCCATGCAATGATCGATA-CCC-TTTTTCAGATAAAAAAATTTCAAATTTTCTTTTTT
64 TGGCCATGCAATGACCGACACCCCTTTTTTCAGATAAAAAAATTTCAAA-TTT-TTTTTT
* * *
168969 GTGTTGGCCATGCAATGGTCGACACCCCCTTTTTGCAGATAAAAAAA
1 GTGTTAGCCATGCAATGGCCGACA-CCCCTTTTTTCAGATAAAAAAA
169016 TTTTCAAATT
Statistics
Matches: 251, Mismatches: 26, Indels: 27
0.83 0.09 0.09
Matches are distributed among these distances:
119 10 0.04
120 19 0.08
121 73 0.29
122 73 0.29
123 72 0.29
124 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (121 bp):
GTGTTAGCCATGCAATGGCCGACACCCCTTTTTTCAGATAAAAAAAATCAAATTTTTAGATGTTG
GCCATGCAATGACCGACACCCCTTTTTTCAGATAAAAAAATTTCAAATTTTTTTTT
Found at i:169405 original size:60 final size:61
Alignment explanation
Indices: 169340--169473 Score: 166
Period size: 61 Copynumber: 2.2 Consensus size: 61
169330 AATTAAGAAG
* *
169340 GGGTGTCGGCCAT-GCATGGTTAACA-CAAAAAAGTTCG-AATTTTTTTATCTGACAAAAAA
1 GGGTGTCGGCCATGGCATAGTTAACACCAAAAAAATTCGAAATTTTTTTAT-TGACAAAAAA
* * * * *
169399 GAGGTGTCGACCATGGCATAGTTAATACCAAAAAAATTTGAAATTTTTTTATTTACAAAAGA
1 G-GGTGTCGGCCATGGCATAGTTAACACCAAAAAAATTCGAAATTTTTTTATTGACAAAAAA
169461 GGGTGTCGGCCAT
1 GGGTGTCGGCCAT
169474 TAAATGACCA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 1 0.02
60 11 0.17
61 21 0.33
62 19 0.30
63 11 0.17
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (61 bp):
GGGTGTCGGCCATGGCATAGTTAACACCAAAAAAATTCGAAATTTTTTTATTGACAAAAAA
Found at i:169563 original size:28 final size:28
Alignment explanation
Indices: 169531--169586 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
169521 AGGGCCCAAA
*
169531 AATTTGATTTTTTTATCAGATAAATAGG
1 AATTTGATTTTTTTATCAAATAAATAGG
169559 AATTTGATTTTTTTATCAAATAAATAGG
1 AATTTGATTTTTTTATCAAATAAATAGG
169587 GGTGTCGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (28 bp):
AATTTGATTTTTTTATCAAATAAATAGG
Found at i:170895 original size:15 final size:16
Alignment explanation
Indices: 170856--170896 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
170846 GAAAAGTTTT
*
170856 TGCTGGTTTTCTATTC
1 TGCTGGTTTTCTACTC
170872 TGCTGGTTTTCTACT-
1 TGCTGGTTTTCTACTC
*
170887 TGTTGGTTTT
1 TGCTGGTTTT
170897 TTCACTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.05, C:0.15, G:0.22, T:0.59
Consensus pattern (16 bp):
TGCTGGTTTTCTACTC
Found at i:172593 original size:31 final size:31
Alignment explanation
Indices: 172535--172592 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
172525 GGACCCCCAA
*
172535 AAAGTTTAAGTACCAACTTAAGAAAAAATAT
1 AAAGTTTAAGTACCAAATTAAGAAAAAATAT
*
172566 AAAGTTTAGGTACCAAATT-AGAAAAAA
1 AAAGTTTAAGTACCAAATTAAGAAAAAA
172593 AAGTGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.55, C:0.09, G:0.12, T:0.24
Consensus pattern (31 bp):
AAAGTTTAAGTACCAAATTAAGAAAAAATAT
Found at i:172604 original size:33 final size:31
Alignment explanation
Indices: 172535--172617 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
172525 GGACCCCCAA
* * *
172535 AAAGTTTAAGTACCAACTTAAGAAAAAATAT
1 AAAGTTTAGGTACCAAATTAAAAAAAAATAT
*
172566 AAAGTTTAGGTACCAAATTAGAAAAAAAAGTGT
1 AAAGTTTAGGTACCAAATTA-AAAAAAAA-TAT
*
172599 CAAGTTT-GGATACCAAATT
1 AAAGTTTAGG-TACCAAATT
172618 GGACCAAATC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
31 18 0.41
32 9 0.20
33 17 0.39
ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27
Consensus pattern (31 bp):
AAAGTTTAGGTACCAAATTAAAAAAAAATAT
Found at i:173030 original size:23 final size:23
Alignment explanation
Indices: 173004--173051 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
172994 AGTATATGTA
173004 TTTC-ATATTATAGTTATATTATT
1 TTTCAATATTATAGTTAT-TTATT
*
173027 TTTCAATATTATATTTATTTATT
1 TTTCAATATTATAGTTATTTATT
173050 TT
1 TT
173052 ATAGAACAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTCAATATTATAGTTATTTATT
Found at i:173283 original size:4 final size:4
Alignment explanation
Indices: 173274--173443 Score: 124
Period size: 4 Copynumber: 42.0 Consensus size: 4
173264 TTTAAAAATA
* * * * *
173274 ATTT ATTT ATTT ATTT ATTTT ATTT AGTT AATT ATTA ATAT ATTT AGTT
1 ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
* * * * * * * *
173323 AATT AATT AATT ACTT ATTT ATTT AGTT AGTT AGTT AGTT ATTTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT
* ** ** *
173372 ATTT ATTT AGTT ATTT ATTT GCTT ATTT ATTT GCTT ATTT ATTT ACTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
* * *
173420 ATTC ATTT ACTT AGTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT
173444 GTATGAATGA
Statistics
Matches: 134, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
4 127 0.95
5 7 0.05
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.64
Consensus pattern (4 bp):
ATTT
Found at i:175909 original size:41 final size:40
Alignment explanation
Indices: 175838--176114 Score: 260
Period size: 41 Copynumber: 6.7 Consensus size: 40
175828 ATTTAATAAC
* * *
175838 CGAGTCATGAATCTTCCTTTCTAAAC--AATCTTATGCTCTAC
1 CGAGTCATGAGTCTTCC-TT-TAAACATAATCTCATGCT-TAT
*
175879 CGAGTCATAAGTCTTCCTTTAAACATAATCTCATGCTTATTT
1 CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCTTA--T
* *
175921 CGAGTCACGAGTCTTCC-TTAAACATAATCTCATGCTCATTT
1 CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCT--TAT
* * *
175962 TGAGTCACGAGTCTT-CTTTAAACATAATCTCATGCTCATTT
1 CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCT--TAT
*
176003 CGAGTCACGAGTCTTCC-TTAAACATAATCTCATGCTTATTT
1 CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCTTA--T
* *
176044 TGAGTCATGAGTCTT-CTTTAAACGTAATCTCATGCTTATT
1 CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCTTA-T
* *
176084 CCGAGACATGAGTCTTCCATTTACACATAAT
1 -CGAGTCATGAGTCTTCC-TTTAAACATAAT
176115 GATTAAAGAA
Statistics
Matches: 205, Mismatches: 17, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
39 6 0.03
40 8 0.04
41 163 0.80
42 17 0.08
43 11 0.05
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.37
Consensus pattern (40 bp):
CGAGTCATGAGTCTTCCTTTAAACATAATCTCATGCTTAT
Found at i:175993 original size:82 final size:82
Alignment explanation
Indices: 175888--176101 Score: 356
Period size: 82 Copynumber: 2.6 Consensus size: 82
175878 CCGAGTCATA
175888 AGTCTTCCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAACATAATCTCA
1 AGTCTT-CTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAACATAATCTCA
175953 TGCTCATTTTGAGTCACG
65 TGCTCATTTTGAGTCACG
*
175971 AGTCTTCTTTAAACATAATCTCATGCTCATTTCGAGTCACGAGTCTTCCTTAAACATAATCTCAT
1 AGTCTTCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAACATAATCTCAT
* *
176036 GCTTATTTTGAGTCATG
66 GCTCATTTTGAGTCACG
* * * *
176053 AGTCTTCTTTAAACGTAATCTCATGCTTATTCCGAGACATGAGTCTTCC
1 AGTCTTCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCC
176102 ATTTACACAT
Statistics
Matches: 123, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 117 0.95
83 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (82 bp):
AGTCTTCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAACATAATCTCAT
GCTCATTTTGAGTCACG
Found at i:176097 original size:123 final size:126
Alignment explanation
Indices: 175879--176114 Score: 343
Period size: 123 Copynumber: 1.9 Consensus size: 126
175869 TATGCTCTAC
*
175879 CGAGTCATAAGTCTTCCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAAC
1 CGAGTCACAAGTCTTCCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAAC
** *
175944 ATAATCTCATGCTCATTTTGAGTCACGAGTCTT-C-TTTAAACATAATCTCATGCTCATTT
66 ATAATCTCATGCTCATTCCGAGACACGAGTCTTCCATTTAAACATAATCTCATGCTCATTT
* * * *
176003 CGAGTCACGAGTCTTCC-TTAAACATAATCTCATGCTTATTTTGAGTCATGAGTCTTCTTTAAAC
1 CGAGTCACAAGTCTTCCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAAC
* * * *
176067 GTAATCTCATGCTTATTCCGAGACATGAGTCTTCCATTTACACATAAT
66 ATAATCTCATGCTCATTCCGAGACACGAGTCTTCCATTTAAACATAAT
176115 GATTAAAGAA
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
123 71 0.72
124 16 0.16
125 11 0.11
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (126 bp):
CGAGTCACAAGTCTTCCTTTAAACATAATCTCATGCTTATTTCGAGTCACGAGTCTTCCTTAAAC
ATAATCTCATGCTCATTCCGAGACACGAGTCTTCCATTTAAACATAATCTCATGCTCATTT
Found at i:181158 original size:38 final size:36
Alignment explanation
Indices: 181092--181162 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 36
181082 TAATTATTTT
*
181092 TTAAAATTTAAAAAATATATAAATTATTTTTAAAAA
1 TTAAAATTTAAAAAATATATAAAATATTTTTAAAAA
181128 TTAAAATTAATAAAAAAGTATA-AAAATATTTTTAA
1 TTAAAATT--TAAAAAA-TATATAAAATATTTTTAA
181163 TTTTAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 8 0.26
38 19 0.61
39 4 0.13
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (36 bp):
TTAAAATTTAAAAAATATATAAAATATTTTTAAAAA
Found at i:181169 original size:37 final size:36
Alignment explanation
Indices: 181090--181170 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 36
181080 ATTAATTATT
*
181090 TTTTAAAATTTAAAAAATATATAAATTATTTTTAAA
1 TTTTAAAATTTAAAAAATATATAAAATATTTTTAAA
**
181126 AATTAAAATTAATAAAAAAGTATA-AAAATATTTTT-AA
1 TTTTAAAATT--TAAAAAA-TATATAAAATATTTTTAAA
181163 TTTTAAAA
1 TTTTAAAA
181171 AATAATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
36 8 0.22
37 8 0.22
38 17 0.46
39 4 0.11
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (36 bp):
TTTTAAAATTTAAAAAATATATAAAATATTTTTAAA
Found at i:181424 original size:18 final size:19
Alignment explanation
Indices: 181382--181430 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
181372 CTAATATTGC
181382 TTTTTTAAGTTTATTTTTT
1 TTTTTTAAGTTTATTTTTT
*
181401 TATTTT-AGATTT-TTTTTT
1 TTTTTTAAG-TTTATTTTTT
*
181419 TTTTTTTAGTTT
1 TTTTTTAAGTTT
181431 GTTAGCTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (19 bp):
TTTTTTAAGTTTATTTTTT
Found at i:182099 original size:20 final size:20
Alignment explanation
Indices: 182074--182115 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
182064 AAAAGCATAC
182074 TTGTATCAGTAGAACTGAAG
1 TTGTATCAGTAGAACTGAAG
* *
182094 TTGTATCGGTAGAAGTGAAG
1 TTGTATCAGTAGAACTGAAG
182114 TT
1 TT
182116 TTACTGATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (20 bp):
TTGTATCAGTAGAACTGAAG
Found at i:185012 original size:12 final size:12
Alignment explanation
Indices: 184997--185038 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
184987 TAAATCAAGA
184997 TTTAATTAAAAT
1 TTTAATTAAAAT
185009 TTTAA-TAAATAT
1 TTTAATTAAA-AT
185021 TTATAATTATAAAT
1 TT-TAATTA-AAAT
185035 TTTA
1 TTTA
185039 CAAATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 4 0.15
12 9 0.35
13 5 0.19
14 6 0.23
15 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATTAAAAT
Found at i:185043 original size:25 final size:26
Alignment explanation
Indices: 184999--185048 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
184989 AATCAAGATT
*
184999 TAATTAAAATTTTAATAAA-TATTTA
1 TAATTAAAATTTTAACAAATTATTTA
185024 TAATTATAAATTTT-ACAAATTATTT
1 TAATTA-AAATTTTAACAAATTATTT
185049 TTTATACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
TAATTAAAATTTTAACAAATTATTTA
Found at i:185213 original size:41 final size:41
Alignment explanation
Indices: 185128--185219 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 41
185118 AAACATAAAA
* ** * * *
185128 CAAATATAATTTTATCAAATTAAAATTGAAAAGTTTAAATC
1 CAAATACAATTTTATCAAATTAAAATCCAAAAGCTCAAACC
*
185169 CAAATACAATTTTATTAAA-TAAAATCCAAAAGCTCAAGACC
1 CAAATACAATTTTATCAAATTAAAATCCAAAAGCTCAA-ACC
*
185210 CAAAGACAAT
1 CAAATACAAT
185220 ATAAAAACTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 14 0.33
41 28 0.67
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.28
Consensus pattern (41 bp):
CAAATACAATTTTATCAAATTAAAATCCAAAAGCTCAAACC
Found at i:188686 original size:28 final size:28
Alignment explanation
Indices: 188634--188687 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
188624 ATTGTAGTGT
* *
188634 GTTTATATTAATTATATTATAAAAATAA
1 GTTTATATTAATTACATAATAAAAATAA
*
188662 GTTTATATTAATTACATAATGAAAAT
1 GTTTATATTAATTACATAATAAAAAT
188688 GAAAAAATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (28 bp):
GTTTATATTAATTACATAATAAAAATAA
Found at i:191007 original size:22 final size:21
Alignment explanation
Indices: 190967--191006 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
190957 TTTTATATTT
*
190967 TTATTTATTTTCATAAAAATG
1 TTATGTATTTTCATAAAAATG
*
190988 TTATGTATTTTTATAAAAA
1 TTATGTATTTTCATAAAAA
191007 AAAAACTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (21 bp):
TTATGTATTTTCATAAAAATG
Found at i:194728 original size:123 final size:124
Alignment explanation
Indices: 194549--194788 Score: 367
Period size: 123 Copynumber: 1.9 Consensus size: 124
194539 TTTATATAAG
* *
194549 AATGCATCATTCTACCCTTTTTTAAATGGAAGTTATGAGAAATCAATATGGAAAAGATTTGGTCT
1 AATGCATCATTCTA-CCTTTTTTAAATGGAAGTCATGAGAAATAAATATGGAAAAGATTTGGTCT
* * *
194614 TACATTGATTTTTTTAATTTGGAAATTTTAATTATTATTTTATATAAATTTTTTATATTGC
65 TACATTGACTTTTTAAATTTCGAAATTTTAATTATTATTTTATAT-AATTTTTTATATTGC
* * *
194675 AATGCGTCATTCTA-CTTTTTTTAAT-GAGGTCATGAGAAATAAATATGGAAAAGATTTGGTCTT
1 AATGCATCATTCTACCTTTTTTAAATGGAAGTCATGAGAAATAAATATGGAAAAGATTTGGTCTT
*
194738 ACATTGACTTTTTAAATTTCGAATTTTTAATTATTATTTTATATAATTTTT
66 ACATTGACTTTTTAAATTTCGAAATTTTAATTATTATTTTATATAATTTTT
194789 GAGCAAAAAG
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
122 7 0.07
123 75 0.71
124 10 0.10
126 13 0.12
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (124 bp):
AATGCATCATTCTACCTTTTTTAAATGGAAGTCATGAGAAATAAATATGGAAAAGATTTGGTCTT
ACATTGACTTTTTAAATTTCGAAATTTTAATTATTATTTTATATAATTTTTTATATTGC
Found at i:195498 original size:29 final size:29
Alignment explanation
Indices: 195461--195559 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 29
195451 TCCTTTTTGA
195461 TCACCCAACTATGAAAAATTACAAAATGG
1 TCACCCAACTATGAAAAATTACAAAATGG
* * * * *** **
195490 TCACTCAACTATTAGTAAATT-TATTTTTT
1 TCACCCAACTATGA-AAAATTACAAAATGG
*
195519 TCACCCAACTATGAAAAGTTACAAAATGG
1 TCACCCAACTATGAAAAATTACAAAATGG
195548 TCACCCAACTAT
1 TCACCCAACTAT
195560 TCAATTTTGT
Statistics
Matches: 49, Mismatches: 19, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
28 4 0.08
29 40 0.82
30 5 0.10
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (29 bp):
TCACCCAACTATGAAAAATTACAAAATGG
Found at i:195546 original size:58 final size:60
Alignment explanation
Indices: 195429--195560 Score: 205
Period size: 58 Copynumber: 2.2 Consensus size: 60
195419 TACACTAGTA
* *
195429 GTCACTCAATTATTAGTAAATTTCCTTTTTGATCACCCAACTATGAAAAATTACAAAATG
1 GTCACTCAACTATTAGTAAATTTCATTTTTGATCACCCAACTATGAAAAATTACAAAATG
* *
195489 GTCACTCAACTATTAGTAAATTT-ATTTTT-TTCACCCAACTATGAAAAGTTACAAAATG
1 GTCACTCAACTATTAGTAAATTTCATTTTTGATCACCCAACTATGAAAAATTACAAAATG
*
195547 GTCACCCAACTATT
1 GTCACTCAACTATT
195561 CAATTTTGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
58 40 0.60
59 5 0.07
60 22 0.33
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (60 bp):
GTCACTCAACTATTAGTAAATTTCATTTTTGATCACCCAACTATGAAAAATTACAAAATG
Found at i:195732 original size:60 final size:60
Alignment explanation
Indices: 195668--195786 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 60
195658 GTTAAGTTAT
* * *** *
195668 CATTTTGTAACTTTTCATAGTTGGGTGACCAAAAAAGAAATTTACTAATAGTTGGGTGAC
1 CATTTTATAACTTTTCATAATTAAATGACCAAAAAAGAAATTTACTAATAGTTAGGTGAC
* *
195728 CATTTTATAACTTTTCATAATTAAATTACCAAAAGAGAAATTTACTAATAGTTAGGTGA
1 CATTTTATAACTTTTCATAATTAAATGACCAAAAAAGAAATTTACTAATAGTTAGGTGA
195787 TTACTAATGT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (60 bp):
CATTTTATAACTTTTCATAATTAAATGACCAAAAAAGAAATTTACTAATAGTTAGGTGAC
Found at i:201304 original size:23 final size:23
Alignment explanation
Indices: 201274--201322 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
201264 TTATCAACAT
201274 ATATAATAACTCTGTTTATGGAA
1 ATATAATAACTCTGTTTATGGAA
201297 ATATAATAACTCTGTTTATGGAA
1 ATATAATAACTCTGTTTATGGAA
201320 ATA
1 ATA
201323 GGATCCTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (23 bp):
ATATAATAACTCTGTTTATGGAA
Found at i:204216 original size:21 final size:22
Alignment explanation
Indices: 204192--204238 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
204182 TTGAATTTTT
* *
204192 TCAAGAA-TAAAAAATTAAAAA
1 TCAAGAAGAAAAAAATGAAAAA
204213 TCAAGAAGAAAAAAATGAAAAA
1 TCAAGAAGAAAAAAATGAAAAA
204235 TCAA
1 TCAA
204239 TTTTATCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.70, C:0.06, G:0.09, T:0.15
Consensus pattern (22 bp):
TCAAGAAGAAAAAAATGAAAAA
Found at i:207185 original size:37 final size:33
Alignment explanation
Indices: 207144--207233 Score: 90
Period size: 37 Copynumber: 2.5 Consensus size: 33
207134 TAATTAATTT
207144 TTAAAATTTTAAGAATTCAAAAAATTATAAATGTTCA
1 TTAAAATTTTAA-AATT--AAAAATTATAAAT-TTCA
**
207181 TTAAAATATTTAAAAATGTAAAAATTATAAATTTTT
1 TTAAAAT-TTT-AAAAT-TAAAAATTATAAATTTCA
207217 TTAATAATTTTAAAATT
1 TTAA-AATTTTAAAATT
207234 TTAAAATTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
34 1 0.02
35 5 0.11
36 9 0.19
37 23 0.49
38 6 0.13
39 3 0.06
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (33 bp):
TTAAAATTTTAAAATTAAAAATTATAAATTTCA
Found at i:209535 original size:24 final size:25
Alignment explanation
Indices: 209508--209560 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
209498 AACCTTTTTG
*
209508 GGCTTGTCAGAGCTAACTCT-TCTA
1 GGCTTGTAAGAGCTAACTCTGTCTA
*
209532 GGCTTGTAAGAGCTAATTCTGTCTA
1 GGCTTGTAAGAGCTAACTCTGTCTA
209557 GGCT
1 GGCT
209561 CGTACGAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (25 bp):
GGCTTGTAAGAGCTAACTCTGTCTA
Found at i:213083 original size:52 final size:52
Alignment explanation
Indices: 213003--213193 Score: 249
Period size: 52 Copynumber: 3.6 Consensus size: 52
212993 ATGAAAAAAA
* *
213003 AAGGTCCGATGACTATGTGTCATTGTGAGTATATGAATCCTTTAAGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTTTAAGGATTAT
* * *
213055 AAGGTCTGATGACTATATGTCATCGTGAGTATATGAATCTTTTATGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTTTAAGGATTAT
* *
213107 GAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTATTACAAAAGATT-T
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTT-TT---AAGGATTAT
* * *
213162 AAGGTCTGATGACTTTGTGTCATCATGAGTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTAT
213194 GAAATGGGAA
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
52 85 0.70
53 2 0.02
55 29 0.24
56 5 0.04
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (52 bp):
AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCTTTTAAGGATTAT
Found at i:220692 original size:8 final size:8
Alignment explanation
Indices: 220670--220741 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 8
220660 AAATTTCACC
*
220670 AAAAAAAA
1 AAAAAAAG
220678 AAGAAAAAG
1 AA-AAAAAG
220687 AAAAAAAG
1 AAAAAAAG
*
220695 AGAAAAAG
1 AAAAAAAG
220703 -AAAAAAG
1 AAAAAAAG
*
220710 GAAAAAAG
1 AAAAAAAG
220718 AAAAGAGAAGG
1 AAAA-A-AA-G
220729 AAAAAAAG
1 AAAAAAAG
220737 AAAAA
1 AAAAA
220742 TGAGAGGTCG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
7 6 0.11
8 31 0.56
9 10 0.18
10 3 0.05
11 5 0.09
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:220692 original size:14 final size:13
Alignment explanation
Indices: 220670--220741 Score: 72
Period size: 14 Copynumber: 5.2 Consensus size: 13
220660 AAATTTCACC
220670 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
220683 AAAGAAAAAAAGAGA
1 AAA-AAAAAAAGA-A
*
220698 AAAAGAAAAAAGGA
1 AAAA-AAAAAAGAA
*
220712 AAAAAGAAAAGAGA
1 AAAAAAAAAAGA-A
**
220726 AGGAAAAAAAGAA
1 AAAAAAAAAAGAA
220739 AAA
1 AAA
220742 TGAGAGGTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
13 11 0.23
14 25 0.53
15 11 0.23
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:220692 original size:15 final size:15
Alignment explanation
Indices: 220672--220721 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
220662 ATTTCACCAA
220672 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
220687 AAAAAAAGAGAAAAAG
1 AAAAAAA-AGAAAAAG
*
220703 -AAAAAAGGAAAAAAG
1 AAAAAAAAG-AAAAAG
220718 AAAA
1 AAAA
220722 GAGAAGGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 1 0.03
15 19 0.61
16 11 0.35
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:220698 original size:10 final size:9
Alignment explanation
Indices: 220670--220741 Score: 56
Period size: 10 Copynumber: 7.6 Consensus size: 9
220660 AAATTTCACC
220670 AAAAAAAA-
1 AAAAAAAAG
*
220678 AAGAAAAAG
1 AAAAAAAAG
220687 AAAAAAAGAG
1 AAAAAAA-AG
*
220697 AAAAAGAAAA
1 AAAAA-AAAG
220707 AAGGAAAAAAG
1 AA--AAAAAAG
*
220718 AAAAGAGAAG
1 AAAA-AAAAG
*
220728 GAAAAAAAG
1 AAAAAAAAG
220737 AAAAA
1 AAAAA
220742 TGAGAGGTCG
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
8 7 0.14
9 16 0.32
10 17 0.34
11 7 0.14
12 3 0.06
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:220716 original size:26 final size:26
Alignment explanation
Indices: 220672--220741 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
220662 ATTTCACCAA
* *
220672 AAAAAAAAGAAAAAG-AAAAA-AAGAG
1 AAAAAGAA-AAAAAGAAAAAAGAAAAG
*
220697 AAAAAGAAAAAAGGAAAAAAGAAAAG
1 AAAAAGAAAAAAAGAAAAAAGAAAAG
* *
220723 AGAAGGAAAAAAAGAAAAA
1 AAAAAGAAAAAAAGAAAAA
220742 TGAGAGGTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 5 0.14
25 12 0.32
26 20 0.54
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (26 bp):
AAAAAGAAAAAAAGAAAAAAGAAAAG
Found at i:222021 original size:189 final size:189
Alignment explanation
Indices: 221689--223723 Score: 2355
Period size: 189 Copynumber: 10.7 Consensus size: 189
221679 AATGGACCAA
* * * * *
221689 GAGATTTCAAAACCCATCTTCCTGGTGAGGTACAAAGAAGTGGGTTAAAACATGTAGCAAATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* ** * *
221754 AACGTCCCTAAGGTTACAGTATAGTGGAGTGAAGCAGCAGAATCCTATACCCTTGAGTTGCATTG
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * *
221819 GGTAGGATGAAAATAATGAAGTAGAGTTCAACGTCCATGAGGTTATAGTGGAGTGGAGT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* *
221878 GAGACTTCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAACAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * * *
221943 AACATCCTTGAGATTACAGTGGAGTGGAATGAAGCACCATAATCTTATACCCTTGAGTTACAGTG
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * * *
222008 GGTCGGATGAAAATAATGAAGTAGAACTCAACATACTTGAGGTTACAGTTGAGTGGAGT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
*
222067 GAGACTTCAAATCCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* ** * *
222132 AACATCTTTGAGGTTACAGTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTA
66 AACGTCCCTGAGGTTACAGT-----GGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTG
* * *
222197 CAGTAGGTCGGATGAAAATAATAAAGTAGAGCTCAACATCCCTGAGGTTACAGTGGAGTGGAGT
126 CAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * * *
222261 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAGACAAGTATCAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * *
222326 AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCTGAATCCTATACCCCTGAGTTGCAATG
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * * *
222391 GGTCGTATGAAAATAATAAAGTAGAACTCAACGTCCTTAAGGTTACAGTGGAGTGGAGT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * *
222450 GAGACTTCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAAGTAGCATATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * *
222515 AATGTCCCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTG
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * * * *
222580 GGTCGGATGAAAATAATGAAGCAGAACTCAACATCCTTAAGGTTACAGTGGAGTGAAGT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
*
222639 GAGACTTCAAATCCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * * * *
222704 AACATCTCTAAGGTTATAGTAGAGTGGAGTGAATCACCAGAATCCTATAACCC-TGAGTTGTAAT
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTAT-ACCCTTGAGTTGCAGT
** * * * *
222768 GGGTCAAATGAAAATAATAAAGCAGAGCTCAACGTCTCTGAGGTTACAGTAGAGTGGAGT
130 GGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * * * *
222828 GAGACTTCATATCCCATCTTCTTGGTGAGATACAGAGAAGTGGGTTAAAATAGGTAGCAAATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * * *
222893 AACATCCCTGAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTA
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * *
222958 GGTCAGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAATAGAGTGGACT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * * * * *
223017 AAGACTTCAAATCCCATCTTTCTGGT-AGGTACAGAGAAGTGGGTTAATATAGGTAGTAGATCTT
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * *
223081 AATGCCCCTGAGGTTACAGTAGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
* * * *
223146 GGACGAATGAAAATAATGAAGTAGAACTCAACGTCCCTGAGGTTATAGTGGATTGGAGTGGAGT
131 GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACA---G--TGGAGTGGAGT
* * * * * *
223210 GAGACTTCAAATCTCATCTTTCTAGTGAGGTACAGAGAAGTGGGTTAAAACATGTAACATATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * *
223275 AACGTCCTTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAACCCTTTACCTCTT-AGTTACAAT
66 AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACC-CTTGAGTTGCAGT
** * * * * *
223339 GGGTTAGATGAAAATAATAAAGTAGTGCTTAACGTCTCTGAGGTTATAGTGGAGTGGAGT
130 GGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * ** * * * *
223399 AAGACTTCAAGTCCCATCTTTTTGGTGTGGTACAGAGAAGTGGGTCAAAACA--AAGCGGATCTC
1 GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * * * * *
223462 AACGTCCCTAAGGTTATAGTGGAGTTGAGTGGAGTGAAGAACCA-AATACTATACCCCTGAGTTA
66 AACGTCCCTGAGGTTACAGT---G--GAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTG
* * * * * * * *
223526 CAGTGGGTCGAATTAAAATAATGAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTAGAGT
126 CAGTGGGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
* * ** * * * * *
223590 GAAACTTCAAAACCTTTCTTCC---TGAGGTTATAGTGAAGTGGGTCAAAATAGGTAGCAAATCT
1 GAGACTTCAAATCCCATCTTCCTGGTGAGG-TACAGAGAAGTGGGTTAAAACAGGTAGCAGATCT
* * *
223652 CAAAGTCCCTGAGGTTACAGTGGAGTGGAGTGAAACACCA-TATCCTATATCCC-TGAAGTTGCA
65 CAACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTG-AGTTGCA
*
223715 GTGGATCGG
128 GTGGGTCGG
223724 GTCCAAATGA
Statistics
Matches: 1591, Mismatches: 230, Indels: 52
0.85 0.12 0.03
Matches are distributed among these distances:
186 25 0.02
187 41 0.03
188 141 0.09
189 932 0.59
190 7 0.00
191 103 0.06
192 17 0.01
193 32 0.02
194 290 0.18
195 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (189 bp):
GAGACTTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
AACGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTG
GGTCGGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAGTGGAGTGGAGT
Found at i:222047 original size:94 final size:93
Alignment explanation
Indices: 221764--223205 Score: 509
Period size: 94 Copynumber: 15.2 Consensus size: 93
221754 AACGTCCCTA
** * * * *
221764 AGGTTACAGTATAGTGGAGTGAAGCAGCAGAATCCTATACCCTTGAGTTGCATTGGGTAGGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
** * *
221829 AAATAATGAAGTAGAGTTCAACGTCCATG
65 AAATAATGAAGTAGAACTCAACATCCTTG
* * * * * *
221858 AGGTTATAGTGGAGTGGAGTG-AG-ACTTCAAATCCCAT-CTTCCTGGTGAGGTATAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CCT--TGAGTTACAGTG-GGTC
* * * * * *
221919 GGGTTAAAA-CAGGTAA-CAGATCTCAACATCCTTG
59 GGATGAAAATAATG-AAGTAGAACTCAACATCCTTG
* * *
221953 AGATTACAGTGGAGTGGAATGAAGCACCATAATCTTATACCCTTGAGTTACAGTGGGTCGGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
*
222018 AAATAATGAAGTAGAACTCAACATACTTG
65 AAATAATGAAGTAGAACTCAACATCCTTG
* * * * *
222047 AGGTTACAGTTGAGTGGAGTG-AG-ACTTCAAATCCCAT-CTTCCTGTTGAGGTACAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CC--TTGAGTTACAGTG-GGTC
* * * * * * * *
222108 GGGTTAAAA-CAGGTAGCAGATCTCAACATCTTTG
59 GGATGAAAATAATGAAGTAGAACTCAACATCCTTG
* *
222142 AGGTTACAGTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTAGGTCG
1 AGGTTACAGT-----GGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCG
* * *
222207 GATGAAAATAATAAAGTAGAGCTCAACATCCCTG
60 GATGAAAATAATGAAGTAGAACTCAACATCCTTG
* * * * *
222241 AGGTTACAGTGGAGTGGAGTG-AG-ACTTCAAATCCCAT-CTTCTTGGTGAGGTACAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CCT--TGAGTTACAGTG-GGTC
* * * * * * * * *
222302 GGGTTAAGACAA-GTA-TCAGATCTCAACGTCCCTA
59 GGATGAAAATAATGAAGT-AGAACTCAACATCCTTG
* * * * * * *
222336 AGGTTACACTAGAGTGGAGTGAAGCACCTGAATCCTATACCCCTGAGTTGCAATGGGTCGTATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACC-AAATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
* * *
222401 AAATAATAAAGTAGAACTCAACGTCCTTA
65 AAATAATGAAGTAGAACTCAACATCCTTG
* * * * *
222430 AGGTTACAGTGGAGTGGAGTG-AG-ACTTCAAATCCCAT-CTTCCTGGTGAGGTATAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CCT--TGAGTTACAGTG-GGTC
* * * * * * * ** * *
222491 GGGTTAAAACAA-GTAGCATATCTCAATGTCCCTA
59 GGATGAAAATAATGAAGTAGAACTCAACATCCTTG
**
222525 AGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
* *
222590 AAATAATGAAGCAGAACTCAACATCCTTA
65 AAATAATGAAGTAGAACTCAACATCCTTG
* * * * *
222619 AGGTTACAGTGGAGTGAAGTG-AG-ACTTCAAATCCCAT-CTTCCTGTTGAGGTACAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CC--TTGAGTTACAGTG-GGTC
* * * * * * * *
222680 GGGTTAAAA-CAGGTAGCAGATCTCAACAT-CTCTA
59 GGATGAAAATAATGAAGTAGAACTCAACATCCT-TG
* * * ** * **
222714 AGGTTATAGTAGAGTGGAGTGAATCACCAGAATCCTATAACCC-TGAGTTGTAATGGGTCAAATG
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTAT-ACCCTTGAGTTACAGTGGGTCGGATG
* * * *
222778 AAAATAATAAAGCAGAGCTCAACGT-CTCTG
64 AAAATAATGAAGTAGAACTCAACATCCT-TG
* * * * * * *
222808 AGGTTACAGTAGAGTGGAGTG-AG-ACTTCATATCCCAT-CTTCTTGGTGAGATACAGAGAAGT-
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CCT--TGAGTTACAGTG-GGTC
* * * * * *
222869 GGGTTAAAAT-AGGTAGCA-AATCTCAACATCCCTG
59 GGATGAAAATAATGAAGTAGAA-CTCAACATCCTTG
* * * * ** * *
222903 AGGTTACACTAGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTAGGTCAGATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
* * *
222968 AAATAATGAAGTAGAGCTCAACGTCCCTG
65 AAATAATGAAGTAGAACTCAACATCCTTG
* * * * * * * * *
222997 AGGTTACAATAGAGTGGACT-AAG-ACTTCAAATCCCAT-CTTTCTGGTAGGTACAGAGAAGT-G
1 AGGTTACAGTGGAGTGGAGTGAAGCAC--CAAATCCTATAC--CCTTG-AGTTACAGTG-GGTCG
* * * * * * * *** *
223058 GGTTAATAT-AGGTAGTAGATCTTAATGCCCCTG
60 GATGAAAATAATGAAGTAGAACTCAACATCCTTG
* * * *
223091 AGGTTACAGTAGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGACGAATGA
1 AGGTTACAGTGGAGTGGAGTGAAGCACCA-AATCCTATACCCTTGAGTTACAGTGGGTCGGATGA
* *
223156 AAATAATGAAGTAGAACTCAACGTCCCTG
65 AAATAATGAAGTAGAACTCAACATCCTTG
* *
223185 AGGTTATAGTGGATTGGAGTG
1 AGGTTACAGTGGAGTGGAGTG
223206 GAGTGAGACT
Statistics
Matches: 979, Mismatches: 264, Indels: 210
0.67 0.18 0.14
Matches are distributed among these distances:
91 1 0.00
92 30 0.03
93 151 0.15
94 314 0.32
95 241 0.25
96 144 0.15
97 28 0.03
98 17 0.02
99 27 0.03
100 14 0.01
101 9 0.01
102 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (93 bp):
AGGTTACAGTGGAGTGGAGTGAAGCACCAAATCCTATACCCTTGAGTTACAGTGGGTCGGATGAA
AATAATGAAGTAGAACTCAACATCCTTG
Found at i:222260 original size:99 final size:96
Alignment explanation
Indices: 221940--222261 Score: 245
Period size: 99 Copynumber: 3.4 Consensus size: 96
221930 GGTAACAGAT
* * *
221940 CTCAACATCCTTGAGATTACAGTGGAGTGGA----ATGAAGCACCATAATCTTATACCCTTGAGT
1 CTCAACATCCTTGAGGTTACAGTAGAGTGGAGTGGATGAAGCACCA-AATCCTATACCCTTGAGT
*
222001 TACAGTGGGTCGGATGAAAATAATGAAGTAGAA
65 TACAGTAGGTCGGATGAAAATAAT-AAGTAGAA
* * ** *
222034 CTCAACATACTTGAGGTTACAGTTGAGTGGAGT-GA-G-A-CTTCAAATCCCAT-CTTCCTGTTG
1 CTCAACATCCTTGAGGTTACAGTAGAGTGGAGTGGATGAAGCACCAAATCCTATAC--CC--TTG
* * * * * * *
222094 AGGTACAG-AGAAGT-GGGTTAAAACAGGT-AGCAGAT
62 AGTTACAGTAG--GTCGGATGAAAATA-ATAAGTAGAA
* * * *
222129 CTCAACATCTTTGAGGTTACAGTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAG
1 CTCAACATCCTTGAGGTTACAGTAGAGTGGAGTGGA-TGAAGCACCA-AATCCTATACCCTTGAG
*
222194 TTACAGTAGGTCGGATGAAAATAATAAAGTAGAG
64 TTACAGTAGGTCGGATGAAAATAAT-AAGTAGAA
* *
222228 CTCAACATCCCTGAGGTTACAGTGGAGTGGAGTG
1 CTCAACATCCTTGAGGTTACAGTAGAGTGGAGTG
222262 AGACTTCAAA
Statistics
Matches: 171, Mismatches: 36, Indels: 37
0.70 0.15 0.15
Matches are distributed among these distances:
92 1 0.01
93 6 0.04
94 33 0.19
95 35 0.20
96 21 0.12
97 7 0.04
98 18 0.11
99 37 0.22
100 5 0.03
101 7 0.04
102 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (96 bp):
CTCAACATCCTTGAGGTTACAGTAGAGTGGAGTGGATGAAGCACCAAATCCTATACCCTTGAGTT
ACAGTAGGTCGGATGAAAATAATAAGTAGAA
Found at i:222826 original size:572 final size:568
Alignment explanation
Indices: 221689--223723 Score: 2585
Period size: 572 Copynumber: 3.6 Consensus size: 568
221679 AATGGACCAA
* * * * *
221689 GAGATTTCAAAACCCATCTTCCTGGTGAGGTACAAAGAAGTGGGTTAAAACATGTAGCAAATCTC
1 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAGCAAATCTC
* * * * *
221754 AACGTCCCTAAGGTTACAGTATAGTGGAGTGAAGCAGCAGAATCCTATACCCTTGAGTTGCATTG
66 AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTG
* * * * * *
221819 GGTAGGATGAAAATAATGAAGTAGAGTTCAACGTCCATGAGGTTATAGTGGAGTGGAGTGAGACT
131 GGT-CGATGAAAATAATGAAGTAGAGCTCAACGTCCCTAAGGTTACAATGGAGTGGAGTGAGACT
* **
221884 TCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAACAGATCTCAACATC
195 TCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAATGTC
* * * * * *
221949 CTTGAGATTACAGTGGAGTGGAATGAAGCACCATAATCTTATACCCTTGAGTTACAGTGGGTCGG
260 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGG
* *
222014 ATGAAAATAATGAAGTAGAACTCAACATACTTGAGGTTACAGTTGAGTGGAGTGAGACTTCAAAT
325 ATGAAAATAATGAAGTAGAACTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT
*
222079 CCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATCTTTGAG
390 CCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATCTCTGAG
* * * * *
222144 GTTACAGTACAGCGGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTACAGTAGGTCGGA
455 GTTATAGT--A---GAGTGGAGTGAAGCACCAGAATCCTATAACCCTGAGTTACAATGGGTCAGA
* *
222209 TGAAAATAATAAAGTAGAGCTCAACATCCCTGAGGTTAC--AGTGGAGTGGAGT
515 TGAAAATAATAAAGTAGAGCTCAACGTCTCTGAGGTTACATAGTGGAGTGGAGT
* * *
222261 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAGACAAGTATCAGATCTC
1 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAGCAAATCTC
* *
222326 AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCTGAATCCTATACCCCTGAGTTGCAATG
66 AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTG
* * * *
222391 GGTCGTATGAAAATAATAAAGTAGAACTCAACGTCCTTAAGGTTACAGTGGAGTGGAGTGAGACT
131 GGTCG-ATGAAAATAATGAAGTAGAGCTCAACGTCCCTAAGGTTACAATGGAGTGGAGTGAGACT
* *
222456 TCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAAGTAGCATATCTCAATGTC
195 TCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAATGTC
* *
222521 CCTAAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGTAGTGGGTCGG
260 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGG
* * *
222586 ATGAAAATAATGAAGCAGAACTCAACATCCTTAAGGTTACAGTGGAGTGAAGTGAGACTTCAAAT
325 ATGAAAATAATGAAGTAGAACTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAAT
*
222651 CCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATCTCTAAG
390 CCCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATCTCTGAG
* ** *
222716 GTTATAGTAGAGTGGAGTGAATCACCAGAATCCTATAACCCTGAGTTGTAATGGGTCAAATGAAA
455 GTTATAGTAGAGTGGAGTGAAGCACCAGAATCCTATAACCCTGAGTTACAATGGGTCAGATGAAA
* *
222781 ATAATAAAGCAGAGCTCAACGTCTCTGAGGTTAC--AGTAGAGTGGAGT
520 ATAATAAAGTAGAGCTCAACGTCTCTGAGGTTACATAGTGGAGTGGAGT
* * * *
222828 GAGACTTCATATCCCATCTTCTTGGTGAGATACAGAGAAGTGGGTTAAAATAGGTAGCAAATCTC
1 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAGCAAATCTC
* * * * *
222893 AACATCCCTGAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCTTATACCCCTGAGTTGTAGTA
66 AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTG
* * * *
222958 GGTCAGATGAAAATAATGAAGTAGAGCTCAACGTCCCTGAGGTTACAATAGAGTGGACTAAGACT
131 GGTC-GATGAAAATAATGAAGTAGAGCTCAACGTCCCTAAGGTTACAATGGAGTGGAGTGAGACT
* * * * * * *
223023 TCAAATCCCATCTTTCTGGT-AGGTACAGAGAAGTGGGTTAATATAGGTAGTAGATCTTAATGCC
195 TCAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAATGTC
* * *
223087 CCTGAGGTTACAGTAGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGACGA
260 CCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGG
* * *
223152 ATGAAAATAATGAAGTAGAACTCAACGTCCCTGAGGTTATAGTGGATTGGAGTGGAGTGAGACTT
325 ATGAAAATAATGAAGTAGAACTCAACATCCTTGAGGTTACA---G--TGGAGTGGAGTGAGACTT
* * * * * *
223217 CAAATCTCATCTTTCTAG-TGAGGTACAGAGAAGTGGGTTAAAACATGTAACATATCTCAACGTC
385 CAAATCCCATCTTCCT-GTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATC
* * * * *
223281 -CTTGAGGTTATAGTGGAGTGGAGTGAAGCACCAGAACCCT-TTACCTCTTAGTTACAATGGGTT
449 TC-TGAGGTTATAGTAGAGTGGAGTGAAGCACCAGAATCCTATAACC-CTGAGTTACAATGGGTC
* *
223344 AGATGAAAATAATAAAGTAGTGCTTAACGTCTCTGAGGTT--ATAGTGGAGTGGAGT
512 AGATGAAAATAATAAAGTAGAGCTCAACGTCTCTGAGGTTACATAGTGGAGTGGAGT
* * * * * **
223399 AAGACTTCAAGTCCCATCTTTTTGGTGTGGTACAGAGAAGTGGGTCAAAACAA--AGCGGATCTC
1 GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAGCAAATCTC
* * * * *
223462 AACGTCCCTAAGGTTATAGTGGAGTTGAGTGGAGTGAAGAACCA-AATACTATACCCCTGAGTTA
66 AACGTCCCTAAGGTTACACT--A---GAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTG
* * * * *
223526 CAGTGGGTCGAATTAAAATAATGAAGCAGATCTCAACGTCCCTAAGGTTATAATGGAGTAGAGTG
126 CAGTGGGTCG-ATGAAAATAATGAAGTAGAGCTCAACGTCCCTAAGGTTACAATGGAGTGGAGTG
* * ** * * * *
223591 AAACTTCAAAACCTTTCTTCC---TGAGGTTATAGTGAAGTGGGTCAAAATAGGTAGCAAATCTC
190 AGACTTCAAATCCCATCTTCCTGGTGAGG-TATAGAGAAGTGGGTTAAAACAGGTAGCAGATCTC
* * *
223653 AAAGTCCCTGAGGTTACAGTGGAGTGGAGTGAAACACCA-TATCCTATATCCC-TGAAGTTGCAG
254 AATGTCCCTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATA-CCCTTG-AGTTGCAG
*
223716 TGGATCGG
317 TGGGTCGG
223724 GTCCAAATGA
Statistics
Matches: 1275, Mismatches: 166, Indels: 44
0.86 0.11 0.03
Matches are distributed among these distances:
566 132 0.10
567 281 0.22
568 1 0.00
569 25 0.02
570 7 0.01
571 227 0.18
572 500 0.39
573 85 0.07
574 17 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (568 bp):
GAGACTTCAAATCCCATCTTCTTGGTGAGGTACAGAGAAGTGGGTTAAAACAAGTAGCAAATCTC
AACGTCCCTAAGGTTACACTAGAGTGGAGTGAAGCACCAGAATCCTATACCCCTGAGTTGCAGTG
GGTCGATGAAAATAATGAAGTAGAGCTCAACGTCCCTAAGGTTACAATGGAGTGGAGTGAGACTT
CAAATCCCATCTTCCTGGTGAGGTATAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAATGTCC
CTGAGGTTACAGTGGAGTGGAGTGAAGCACCAGAATCCTATACCCTTGAGTTGCAGTGGGTCGGA
TGAAAATAATGAAGTAGAACTCAACATCCTTGAGGTTACAGTGGAGTGGAGTGAGACTTCAAATC
CCATCTTCCTGTTGAGGTACAGAGAAGTGGGTTAAAACAGGTAGCAGATCTCAACATCTCTGAGG
TTATAGTAGAGTGGAGTGAAGCACCAGAATCCTATAACCCTGAGTTACAATGGGTCAGATGAAAA
TAATAAAGTAGAGCTCAACGTCTCTGAGGTTACATAGTGGAGTGGAGT
Found at i:223857 original size:42 final size:42
Alignment explanation
Indices: 223789--224226 Score: 506
Period size: 42 Copynumber: 10.7 Consensus size: 42
223779 GTTACATCAC
*
223789 CATCCAATCTCTTACCCAGACCATGGGGCAGATTGAAGACAT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* * *
223831 CATCCAAACTCTT-CCCTCGACTATGGGGCAAATTGAAG-C--
1 CATCCAATCTCTTACCC-CGACCATGGGGCAGATTGAAGACAT
* ** * *
223870 CATCTAATCTCTTACCTTGACTATGAGGCAGATTGAAG-C--
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* * ** * * *
223909 CATCCAATTTCTTACCCCGACCATGAGATAGATTAAATATAT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
*
223951 TATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* *
223993 CATCCAATCTCTTACCCCTACCATGGGGCAGATTGAAGACAC
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* *
224035 CATCCAATCTCTTACCCCGACCATGGAGTAGATTGAAG-C-T
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* * *
224075 -ATCCAATCTCTTACCTCAACCATGGGGCAGATTGGAGACAT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
**
224116 CATCCAATCTCTTACATCGACCATGGGGCAGATTGAAG-CA-
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
* **
224156 -ATCCGATCTCTTACCTTGACCATGGGGCAGATTGAAGACAT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
*
224197 CAGCCAATCTCTTACCCCGACCATGGGGCA
1 CATCCAATCTCTTACCCCGACCATGGGGCA
224227 AATCGAAACC
Statistics
Matches: 335, Mismatches: 50, Indels: 22
0.82 0.12 0.05
Matches are distributed among these distances:
39 125 0.37
40 5 0.01
41 8 0.02
42 197 0.59
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (42 bp):
CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACAT
Found at i:223960 original size:81 final size:81
Alignment explanation
Indices: 223789--224245 Score: 508
Period size: 81 Copynumber: 5.6 Consensus size: 81
223779 GTTACATCAC
* * *
223789 CATCCAATCTCTTACCCAGACCATGGGGCAGATTGAAGACATCATCCAAACTCTT-CCCTCGACT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAG-C--CATCCAATCTCTTACCC-CGACC
*
223853 ATGGGGCAAATTGAAG-C--
62 ATGGGGCAGATTGAAGACAT
* ** * * * *
223870 CATCTAATCTCTTACCTTGACTATGAGGCAGATTGAAGCCATCCAATTTCTTACCCCGACCATGA
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGG
** * * *
223935 GATAGATTAAATATAT
66 GGCAGATTGAAGACAT
* *
223951 TATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACATCATCCAATCTCTTACCCCTACCA
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAG-C--CATCCAATCTCTTACCCCGACCA
*
224016 TGGGGCAGATTGAAGACAC
63 TGGGGCAGATTGAAGACAT
* * * * *
224035 CATCCAATCTCTTACCCCGACCATGGAGTAGATTGAAGCTATCCAATCTCTTACCTCAACCATGG
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGG
*
224100 GGCAGATTGGAGACAT
66 GGCAGATTGAAGACAT
** * * **
224116 CATCCAATCTCTTACATCGACCATGGGGCAGATTGAAGCAATCCGATCTCTTACCTTGACCATGG
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGG
224181 GGCAGATTGAAGACAT
66 GGCAGATTGAAGACAT
* * * *
224197 CAGCCAATCTCTTACCCCGACCATGGGGCAAATCGAAACCATCCAATCT
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCT
224246 TTTATCCTTA
Statistics
Matches: 314, Mismatches: 55, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
78 25 0.08
79 3 0.01
80 1 0.00
81 215 0.68
82 1 0.00
83 1 0.00
84 68 0.22
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (81 bp):
CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTCTTACCCCGACCATGG
GGCAGATTGAAGACAT
Found at i:224167 original size:204 final size:203
Alignment explanation
Indices: 223789--224226 Score: 558
Period size: 204 Copynumber: 2.1 Consensus size: 203
223779 GTTACATCAC
* * *
223789 CATCCAATCTCTTACCCAGACCATGGGGCAGATTGAAGACATCATCCAAACTCTTCCCTCGACTA
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACACCATCCAAACTCTTCCCTCGACCA
* * ** * *
223854 TGGGGCAAATTGAAGCCATCTAATCTCTTACCTTGACTATGAGGCAGATTGAAGCCATCCAATTT
66 TGGAGCAAATTGAAGCCATCCAATCTCTTACCTCAACCATGAGGCAGATTGAAGCCATCCAATCT
* * *
223919 CTTACCCCGACCATGAGATAGATTAAATATATTATCCAATCTCTTACCCCGACCATGGGGCAGAT
131 CTTACACCGACCATGAGACAGATTAAATACA-TATCCAATCTCTTACCCCGACCATGGGGCAGAT
223984 TGAAGACAT
195 TGAAGACAT
* *
223993 CATCCAATCTCTTACCCCTACCATGGGGCAGATTGAAGACACCATCCAATCTCTTACCC-CGACC
1 CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACACCATCCAAACTCTT-CCCTCGACC
* * * * *
224057 ATGGAGTAGATTGAAGCTATCCAATCTCTTACCTCAACCATGGGGCAGATTGGAGACATCATCCA
65 ATGGAGCAAATTGAAGCCATCCAATCTCTTACCTCAACCATGAGGCAGATTGAAG-C--CATCCA
* * * * * * **
224122 ATCTCTTACATCGACCATGGGGCAGATTGAA-GCA-ATCCGATCTCTTACCTTGACCATGGGGCA
127 ATCTCTTACACCGACCATGAGACAGATTAAATACATATCCAATCTCTTACCCCGACCATGGGGCA
224185 GATTGAAGACAT
192 GATTGAAGACAT
*
224197 CAGCCAATCTCTTACCCCGACCATGGGGCA
1 CATCCAATCTCTTACCCCGACCATGGGGCA
224227 AATCGAAACC
Statistics
Matches: 201, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
204 166 0.83
205 4 0.02
206 1 0.00
207 30 0.15
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (203 bp):
CATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGACACCATCCAAACTCTTCCCTCGACCA
TGGAGCAAATTGAAGCCATCCAATCTCTTACCTCAACCATGAGGCAGATTGAAGCCATCCAATCT
CTTACACCGACCATGAGACAGATTAAATACATATCCAATCTCTTACCCCGACCATGGGGCAGATT
GAAGACAT
Found at i:227224 original size:14 final size:14
Alignment explanation
Indices: 227202--227236 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
227192 AGCTATGAAG
227202 TTCTACCCTATAAC
1 TTCTACCCTATAAC
*
227216 TTCTGCCCTATAAC
1 TTCTACCCTATAAC
227230 TTCTACC
1 TTCTACC
227237 GATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.37, G:0.03, T:0.37
Consensus pattern (14 bp):
TTCTACCCTATAAC
Found at i:228076 original size:94 final size:94
Alignment explanation
Indices: 227914--228327 Score: 485
Period size: 94 Copynumber: 4.4 Consensus size: 94
227904 AATGTCATTT
* * * * * **
227914 CTGTTATCGGTATACGATGATGCTCACACTAAGTTGACGAGGACTCGTAACATATACGGTACCTC
1 CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGTGGTACCTC
* *
227979 AGCCATAGATACGATATCTGTTCATATAA
66 AGCCATCGATACGATATCTGTACATATAA
* * * * *
228008 TTGTTACTAGTATACGATGCTGCTCACACTAAACTGACGAGGACTCACAACATATGCT-ATACCT
1 CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATG-TGGTACCT
* * *
228072 CAGCCATTGATATGGTATCTGTACATATAA
65 CAGCCATCGATACGATATCTGTACATATAA
* ** * * *
228102 CTGTTACCAGTATATGATGCTGCTCACACTAAATTGACAAGGACTCGTAACATAAGTGGTACCTC
1 CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGTGGTACCTC
*
228167 AGCCATCGATACGATATTTGTACATATAA
66 AGCCATCGATACGATATCTGTACATATAA
* * * * * *
228196 CTATTACCAGTATACGATGTTGCTCATATTAAGCTGACGAGGACTCGCAAGATATGTGGTACCTT
1 CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGTGGTACCTC
* * *
228261 AGCCATCGATAAGGTATCTGCACATATAA
66 AGCCATCGATACGATATCTGTACATATAA
*
228290 CTGTT-CC-CTA-ACGATGCTGCTCACACTAAGCTGACGAG
1 CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAG
228328 AATATGTAAA
Statistics
Matches: 268, Mismatches: 50, Indels: 7
0.82 0.15 0.02
Matches are distributed among these distances:
91 25 0.09
92 2 0.01
93 3 0.01
94 238 0.89
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (94 bp):
CTGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGTGGTACCTC
AGCCATCGATACGATATCTGTACATATAA
Found at i:231408 original size:11 final size:12
Alignment explanation
Indices: 231394--231448 Score: 69
Period size: 11 Copynumber: 4.8 Consensus size: 12
231384 AATCAAACCC
231394 ATTTTAAATTT-
1 ATTTTAAATTTA
231405 ATTTTAAATTTA
1 ATTTTAAATTTA
*
231417 AATTT-AATTTA
1 ATTTTAAATTTA
*
231428 AGTTTAAATTTA
1 ATTTTAAATTTA
*
231440 TTTTTAAAT
1 ATTTTAAAT
231449 GTAAATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 21 0.55
12 17 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (12 bp):
ATTTTAAATTTA
Found at i:231416 original size:6 final size:6
Alignment explanation
Indices: 231396--231469 Score: 66
Period size: 6 Copynumber: 12.8 Consensus size: 6
231386 TCAAACCCAT
* * **
231396 TTTAAA TTT-AT TTTAAA TTTAAA TTT-AA TTTAAG TTTAAA TTTATT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
231442 TTTAAA TGTAAA TTT--A TTATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TT-TAAA TTTAA
231470 TAAAAGTCCA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
4 3 0.06
5 10 0.19
6 37 0.70
7 3 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:231418 original size:17 final size:17
Alignment explanation
Indices: 231396--231469 Score: 103
Period size: 17 Copynumber: 4.3 Consensus size: 17
231386 TCAAACCCAT
231396 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* *
231413 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
231430 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-TTTTAAA
* *
231448 TGTAAATTTATTATAAA
1 TTTAAATTTATTTTAAA
231465 TTTAA
1 TTTAA
231470 TAAAAGTCCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
17 35 0.71
18 14 0.29
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:231457 original size:12 final size:12
Alignment explanation
Indices: 231396--231469 Score: 66
Period size: 11 Copynumber: 6.4 Consensus size: 12
231386 TCAAACCCAT
*
231396 TTTAAATTT-AT
1 TTTAAATTTAAA
231407 TTTAAATTTAAA
1 TTTAAATTTAAA
*
231419 TTT-AATTTAAG
1 TTTAAATTTAAA
**
231430 TTTAAATTTATT
1 TTTAAATTTAAA
*
231442 TTTAAATGTAAA
1 TTTAAATTTAAA
231454 TTT--ATTATAAA
1 TTTAAATT-TAAA
231465 TTTAA
1 TTTAA
231470 TAAAAGTCCA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
10 2 0.04
11 26 0.52
12 22 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:231490 original size:14 final size:14
Alignment explanation
Indices: 231471--231501 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
231461 TAAATTTAAT
231471 AAAAGTCCAAATAC
1 AAAAGTCCAAATAC
*
231485 AAAAGTCCAATTAC
1 AAAAGTCCAAATAC
231499 AAA
1 AAA
231502 TTGGGCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.19, G:0.06, T:0.16
Consensus pattern (14 bp):
AAAAGTCCAAATAC
Found at i:232190 original size:13 final size:13
Alignment explanation
Indices: 232174--232208 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
232164 ATAATATTAA
*
232174 TAATAAATAATGG
1 TAATAAATAACGG
*
232187 TAATAAATAACGT
1 TAATAAATAACGG
232200 TAATAAATA
1 TAATAAATA
232209 TTAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (13 bp):
TAATAAATAACGG
Found at i:232190 original size:16 final size:16
Alignment explanation
Indices: 232142--232192 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
232132 AGTTAATGGG
*
232142 TAATAAATAA-GGTTA
1 TAATAAATAATGGTAA
* **
232157 TATATTAATAATATTAA
1 TA-ATAAATAATGGTAA
232174 TAATAAATAATGGTAA
1 TAATAAATAATGGTAA
232190 TAA
1 TAA
232193 ATAACGTTAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
15 2 0.07
16 21 0.78
17 4 0.15
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (16 bp):
TAATAAATAATGGTAA
Found at i:233329 original size:30 final size:30
Alignment explanation
Indices: 233295--233510 Score: 118
Period size: 30 Copynumber: 7.3 Consensus size: 30
233285 TAAAAATCAT
233295 ATTTTGACTCCTGAACTTTTCC-AAAATTCC
1 ATTTTGAC-CCTGAACTTTTCCAAAAATTCC
* * **
233325 ATTTTTGACCTTGAA-TGTTT-CAATAATTAT
1 A-TTTTGACCCTGAACT-TTTCCAAAAATTCC
* *
233355 ATTTTTACCCCCGAAC--TTCCAAAAATTCC
1 ATTTTGA-CCCTGAACTTTTCCAAAAATTCC
* * *
233384 ATTTTTGA-TCTCAATTTTTCCAAAAATTACC
1 A-TTTTGACCCTGAACTTTTCCAAAAATT-CC
*
233415 ATTTT-ACCCTCAAAC--TTCCAAAAATTCC
1 ATTTTGACCCT-GAACTTTTCCAAAAATTCC
* *
233443 ATTTTTTATCCT-AACTTTTCC-AAAATTACC
1 A-TTTTGACCCTGAACTTTTCCAAAAATT-CC
*
233473 ATTTT-ACCCTCG-AC-CTTCCAAAAATTCC
1 ATTTTGACCCT-GAACTTTTCCAAAAATTCC
233501 ATTTTTGACC
1 A-TTTTGACC
233511 TTAATTTTTT
Statistics
Matches: 143, Mismatches: 21, Indels: 44
0.69 0.10 0.21
Matches are distributed among these distances:
28 22 0.15
29 53 0.37
30 56 0.39
31 12 0.08
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.40
Consensus pattern (30 bp):
ATTTTGACCCTGAACTTTTCCAAAAATTCC
Found at i:233494 original size:117 final size:117
Alignment explanation
Indices: 233357--233602 Score: 320
Period size: 117 Copynumber: 2.1 Consensus size: 117
233347 ATAATTATAT
* *
233357 TTTTACCCCCGAACTTCCAAAAATTCCATTTTTGATCTCAA-TTTTTCCAAAAATTACCATTTTA
1 TTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCTCAATTTTTTCC-AAAATTACCATTTTA
* * * *
233421 -CCCTCAAACT-TCCAAAAATTCCATTTTTTATCCTAACTTTTCC-AAAATTACC
65 CCCCT-AAA-TGTCCAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTACC
* * *
233473 ATTTTACCCTCGACCTTCCAAAAATTCCATTTTTGACCTTAATTTTTTTCAAAATTACCATTTTA
1 -TTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCTCAATTTTTTCCAAAATTACCATTTTA
* * *
233538 CCCCTAGATGTCTAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTATC
65 CCCCTAAATGTCCAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTACC
233591 TTTTACCCTCGA
1 TTTTACCCTCGA
233603 GTGTCTATAA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
116 1 0.01
117 94 0.83
118 18 0.16
ACGTcount: A:0.30, C:0.26, G:0.03, T:0.40
Consensus pattern (117 bp):
TTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCTCAATTTTTTCCAAAATTACCATTTTAC
CCCTAAATGTCCAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTACC
Found at i:233496 original size:58 final size:59
Alignment explanation
Indices: 233313--233602 Score: 287
Period size: 59 Copynumber: 5.0 Consensus size: 59
233303 TCCTGAACTT
* * * *
233313 TTCC-AAAATTCCATTTTTGA-CCTTGAATGTTT-CAATAATTA-TATTTTTACCCCCGAAC
1 TTCCAAAAATTCCATTTTTGATCC-T-AATTTTTCCAAAAATTACCA-TTTTACCCTCGAAC
*
233371 TTCCAAAAATTCCATTTTTGAT-CTCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
1 TTCCAAAAATTCCATTTTTGATCCT-AATTTTTCCAAAAATTACCATTTTACCCTCGAAC
* * *
233430 TTCCAAAAATTCCATTTTTTATCCTAACTTTTCC-AAAATTACCATTTTACCCTCGACC
1 TTCCAAAAATTCCATTTTTGATCCTAATTTTTCCAAAAATTACCATTTTACCCTCGAAC
* *
233488 TTCCAAAAATTCCATTTTTGA-CCTTAATTTTTTTC-AAAATTACCATTTTACCC-CTAGA-
1 TTCCAAAAATTCCATTTTTGATCC-TAA-TTTTTCCAAAAATTACCATTTTACCCTCGA-AC
* * * * * *
233546 TGTCTAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTATC-TTTTACCCTCGA
1 T-TCCAAAAATTCCATTTTTGATCCTAATTTTTCCAAAAATTACCATTTTACCCTCGA
233603 GTGTCTATAA
Statistics
Matches: 199, Mismatches: 21, Indels: 23
0.82 0.09 0.09
Matches are distributed among these distances:
57 2 0.01
58 72 0.36
59 120 0.60
60 5 0.03
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.41
Consensus pattern (59 bp):
TTCCAAAAATTCCATTTTTGATCCTAATTTTTCCAAAAATTACCATTTTACCCTCGAAC
Found at i:233586 original size:30 final size:29
Alignment explanation
Indices: 233311--233587 Score: 117
Period size: 30 Copynumber: 9.4 Consensus size: 29
233301 ACTCCTGAAC
***
233311 TTTTCC-AAAATTCCATTTTTGACCTTGAA
1 TTTTCCAAAAATTCCATTTTT-ACCCCAAA
* ** *
233340 TGTTT-CAATAATTATATTTTTACCCCCGAA
1 T-TTTCCAAAAATTCCATTTTTA-CCCCAAA
* * * *
233370 -CTTCCAAAAATTCCATTTTTGATCTCAAT
1 TTTTCCAAAAATTCCATTTTT-ACCCCAAA
233399 TTTTCCAAAAATTACCA-TTTTACCCTCAAA
1 TTTTCCAAAAATT-CCATTTTTACCC-CAAA
* * * *
233429 -CTTCCAAAAATTCCATTTTTTATCCTAAC
1 TTTTCCAAAAATTCCA-TTTTTACCCCAAA
*
233458 TTTTCC-AAAATTACCA-TTTTACCCTC-GA
1 TTTTCCAAAAATT-CCATTTTTACCC-CAAA
** ** *
233486 CCTTCCAAAAATTCCATTTTTGACCTTAATT
1 TTTTCCAAAAATTCCATTTTT-ACCCCAA-A
* *
233517 TTTTTC-AAAATTACCA-TTTTACCCCTAGA
1 TTTTCCAAAAATT-CCATTTTTACCCC-AAA
* *
233546 -TGTCTAAAAATTCCATTTTTGACCCCAAA
1 TTTTCCAAAAATTCCATTTTT-ACCCCAAA
*
233575 TTTTCCTAAAATT
1 TTTTCCAAAAATT
233588 ATCTTTTACC
Statistics
Matches: 178, Mismatches: 46, Indels: 47
0.66 0.17 0.17
Matches are distributed among these distances:
28 24 0.13
29 65 0.37
30 80 0.45
31 9 0.05
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (29 bp):
TTTTCCAAAAATTCCATTTTTACCCCAAA
Found at i:233622 original size:117 final size:116
Alignment explanation
Indices: 233313--233602 Score: 306
Period size: 117 Copynumber: 2.5 Consensus size: 116
233303 TCCTGAACTT
*** * * *
233313 TTCC-AAAATTCCATTTTTGACCTTGAATGTTT-CAATAATTA-TATTTTTACCCCCGAACTTCC
1 TTCCAAAAATTCCATTTTTGACCCCAAAT-TTTCCAA-AATTACCA-TTTTACCCTCGACCTTCC
*
233375 AAAAATTCCATTTTTGATCTCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
63 AAAAATT-CATTTTTGACCTCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
* * * *
233430 TTCCAAAAATTCCATTTTTTATCCTAACTTTTCCAAAATTACCATTTTACCCTCGACCTTCCAAA
1 TTCCAAAAATTCCATTTTTGACCCCAAATTTTCCAAAATTACCATTTTACCCTCGACCTTCCAAA
* * *
233495 AATTCCATTTTTGACCTTAATTTTTTTC-AAAATTACCATTTTACCC-CTAGA-
66 AATT-CATTTTTGACCTCAA-TTTTTCCAAAAATTACCATTTTACCCTC-AAAC
* *
233546 TGTCTAAAAATTCCATTTTTGACCCCAAATTTTCCTAAAATTATC-TTTTACCCTCGA
1 T-TCCAAAAATTCCATTTTTGACCCCAAATTTTCC-AAAATTACCATTTTACCCTCGA
233603 GTGTCTATAA
Statistics
Matches: 148, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
116 2 0.01
117 109 0.74
118 37 0.25
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.41
Consensus pattern (116 bp):
TTCCAAAAATTCCATTTTTGACCCCAAATTTTCCAAAATTACCATTTTACCCTCGACCTTCCAAA
AATTCATTTTTGACCTCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
Found at i:245559 original size:49 final size:49
Alignment explanation
Indices: 245493--245696 Score: 232
Period size: 49 Copynumber: 4.2 Consensus size: 49
245483 AAAAGCATAA
* *
245493 AAGGGAAAGATTTAAGCCGTAACGGCGAATCCAGTACCACAGAGACGTG
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAGAGACATG
* * * * **
245542 AAGGGAAAGATTAAAGCCGTAATGGCGAATCCAGTACCACAAAGACACA
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAGAGACATG
* * * *
245591 AAGGGAAAGGTTTAAGTCGCAATGGCGAA-CCTAGTACCTCAGAGACATG
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCC-AGTACCACAGAGACATG
* * * * *
245640 AAAGGAAAGATTTAAGCCGCAACGGCGAATCCAGAACCGCAAAGACA-C
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAGAGACATG
245688 AAGGGAAAG
1 AAGGGAAAG
245697 GGTTTAAGTC
Statistics
Matches: 130, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
48 10 0.08
49 118 0.91
50 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.13
Consensus pattern (49 bp):
AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCACAGAGACATG
Found at i:245565 original size:99 final size:98
Alignment explanation
Indices: 245377--245710 Score: 288
Period size: 98 Copynumber: 3.4 Consensus size: 98
245367 CTACAGGTCT
* ** * * * * *
245377 CAGTACCACGAA-ACAGGAAGGGAAATATTTAAGCCATAACGGTGAATCCAGTACAAC-GAAGAT
1 CAGTACCACAAAGACAAAAAGGGAAAGATTTAAGCCGTAACGGCGAATCCAGTACCACAG-AGAC
* *
245440 AT-AGAGGGAAACGTTTAAA-TCGTAATGGCGAA-C
65 ATGA-AGGGAAA-GATTAAAGCCGTAATGGCGAATC
* *
245473 CGTGTACCTCAAA-AGCATAAAAGGGAAAGATTTAAGCCGTAACGGCGAATCCAGTACCACAGAG
1 C-AGTACCACAAAGA-CA-AAAAGGGAAAGATTTAAGCCGTAACGGCGAATCCAGTACCACAGAG
*
245537 ACGTGAAGGGAAAGATTAAAGCCGTAATGGCGAATC
63 ACATGAAGGGAAAGATTAAAGCCGTAATGGCGAATC
* * * * * *
245573 CAGTACCACAAAGACACAAAGGGAAAGGTTTAAGTCGCAATGGCGAA-CCTAGTACCTCAGAGAC
1 CAGTACCACAAAGACAAAAAGGGAAAGATTTAAGCCGTAACGGCGAATCC-AGTACCACAGAGAC
* * * *
245637 ATGAAAGGAAAGATTTAAGCCGCAACGGCGAATC
65 ATGAAGGGAAAGATTAAAGCCGTAATGGCGAATC
* * * * *
245671 CAGAACCGCAAAGAC-ACAAGGGAAAGGGTTTAAGTCGTAA
1 CAGTACCACAAAGACAAAAAGGGAAA-GATTTAAGCCGTAA
245711 TGGTGAACCT
Statistics
Matches: 197, Mismatches: 31, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
96 1 0.01
97 19 0.10
98 102 0.52
99 70 0.36
100 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (98 bp):
CAGTACCACAAAGACAAAAAGGGAAAGATTTAAGCCGTAACGGCGAATCCAGTACCACAGAGACA
TGAAGGGAAAGATTAAAGCCGTAATGGCGAATC
Done.