Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015053.1 Kokia drynarioides strain JFW-HI SEQ_130097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 444518
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 687 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:245628 original size:98 final size:98
Alignment explanation
Indices: 245492--245720 Score: 309
Period size: 98 Copynumber: 2.3 Consensus size: 98
245482 CAAAAGCATA
* * * * *
245492 AAAGGGAAAGATTTAAGCCGTAACGGCGAATCC-AGTACCACAGAGACGTGAAGGGAAAGATTAA
1 AAAGGGAAAGGTTTAAGTCGTAATGGCGAA-CCTAGTACCACAGAGACATGAAAGGAAAGATTAA
* * *
245556 AGCCGTAATGGCGAATCCAGTACCACAAAGACAC
65 AGCCGCAACGGCGAATCCAGAACCACAAAGACAC
* * *
245590 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCTCAGAGACATGAAAGGAAAGATTTAA
1 AAAGGGAAAGGTTTAAGTCGTAATGGCGAACCTAGTACCACAGAGACATGAAAGGAAAGATTAAA
*
245655 GCCGCAACGGCGAATCCAGAACCGCAAAGACAC
66 GCCGCAACGGCGAATCCAGAACCACAAAGACAC
*
245688 -AAGGGAAAGGGTTTAAGTCGTAATGGTGAACCT
1 AAAGGGAAA-GGTTTAAGTCGTAATGGCGAACCT
245721 TATACCCCAA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
97 10 0.09
98 105 0.91
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (98 bp):
AAAGGGAAAGGTTTAAGTCGTAATGGCGAACCTAGTACCACAGAGACATGAAAGGAAAGATTAAA
GCCGCAACGGCGAATCCAGAACCACAAAGACAC
Found at i:245737 original size:98 final size:98
Alignment explanation
Indices: 245492--245765 Score: 284
Period size: 98 Copynumber: 2.8 Consensus size: 98
245482 CAAAAGCATA
* * * * * * * * * *
245492 AAAGGGAAAGATTTAAGCCGTAACGGCGAATCC-AGTACCACAGAGACGTGAAGGGAAAGATTAA
1 AAAGGGAAAGGTTTAAGTCGCAATGGCGAA-CCTAGTACCCCAAAAACATGAAAGGAAAGATTTA
* * *
245556 AGCCGTAATGGCGAATCCAGTACCACAAAGACAC
65 AGCCGCAACGGCGAATCCAGAACCACAAAGACAC
* * *
245590 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCTCAGAGACATGAAAGGAAAGATTTAA
1 AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCCCAAAAACATGAAAGGAAAGATTTAA
*
245655 GCCGCAACGGCGAATCCAGAACCGCAAAGACAC
66 GCCGCAACGGCGAATCCAGAACCACAAAGACAC
* * * *
245688 -AAGGGAAAGGGTTTAAGTCGTAATGGTGAACCTTA-TACCCCAAAAACATGAAAGAAAAAAAAT
1 AAAGGGAAA-GGTTTAAGTCGCAATGGCGAACC-TAGTACCCCAAAAACATGAAAG--GAAAGAT
*
245751 TTAAGCTGCAACGGC
62 TTAAGCCGCAACGGC
245766 TAATTTAGTA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
97 10 0.07
98 120 0.79
99 2 0.01
100 19 0.13
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.15
Consensus pattern (98 bp):
AAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCCCAAAAACATGAAAGGAAAGATTTAA
GCCGCAACGGCGAATCCAGAACCACAAAGACAC
Found at i:246205 original size:16 final size:16
Alignment explanation
Indices: 246186--246245 Score: 52
Period size: 17 Copynumber: 3.8 Consensus size: 16
246176 ACCCATTTTA
246186 AATTTATTTTAAGATT
1 AATTTATTTTAAGATT
*
246202 AA-TT-TTTTAAAATTT
1 AATTTATTTTAAGA-TT
* * *
246217 AAATTAATTTAAGTTT
1 AATTTATTTTAAGATT
246233 AAATTTATTTTAA
1 -AATTTATTTTAA
246246 AATTTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
14 7 0.21
15 6 0.18
16 6 0.18
17 15 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
AATTTATTTTAAGATT
Found at i:246244 original size:17 final size:17
Alignment explanation
Indices: 246182--246269 Score: 85
Period size: 16 Copynumber: 5.3 Consensus size: 17
246172 TCAAACCCAT
246182 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
*
246200 -TT-AATTT-TTTAAAA
1 TTTAAATTTATTTTAAA
* *
246214 TTTAAA-TTAATTTAAG
1 TTTAAATTTATTTTAAA
246230 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTT-AAA
* *
246248 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
246265 TTTAA
1 TTTAA
246270 TAAAAGTCCA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
14 1 0.02
15 9 0.16
16 17 0.30
17 16 0.28
18 14 0.25
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:246293 original size:14 final size:14
Alignment explanation
Indices: 246271--246301 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
246261 TAAATTTAAT
*
246271 AAAAGTCCAATTAC
1 AAAAATCCAATTAC
246285 AAAAATCCAATTAC
1 AAAAATCCAATTAC
246299 AAA
1 AAA
246302 TTAGGCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.19, G:0.03, T:0.19
Consensus pattern (14 bp):
AAAAATCCAATTAC
Found at i:246980 original size:40 final size:42
Alignment explanation
Indices: 246933--247018 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
246923 GATATTAAGT
*
246933 TAATGGGTAATAAATAAGG-T-TATATTAATAATATTAATAA
1 TAATGGGTAATAAATAAGGTTATATATTAATAATAATAATAA
246973 TAATGGGTAATAAATAAGGTTATATATTAATAATAATAATAA
1 TAATGGGTAATAAATAAGGTTATATATTAATAATAATAATAA
247015 TAAT
1 TAAT
247019 ATTAATAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
40 19 0.44
41 1 0.02
42 23 0.53
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (42 bp):
TAATGGGTAATAAATAAGGTTATATATTAATAATAATAATAA
Found at i:247008 original size:3 final size:3
Alignment explanation
Indices: 247000--247034 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
246990 GGTTATATAT
*
247000 TAA TAA TAA TAA TAA TAA TAT TAA TAA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
247035 GGTAATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:247019 original size:54 final size:57
Alignment explanation
Indices: 246958--247092 Score: 161
Period size: 60 Copynumber: 2.4 Consensus size: 57
246948 AAGGTTATAT
* *
246958 TAATAATATTAATAAT-AAT-GGGTAATAAATAAGGTT-AT-ATATTAATAATAATAA
1 TAATAATATTAATAATAAATAGGGTAATAAATAACGTTAATAATATTAATAAAAAT-A
*
247012 TAATAATATTAATAATAAATAATGGTAATAAATAACGTTAATAAATATTAATAAAAATA
1 TAATAATATTAATAATAAAT-AGGGTAATAAATAACGTTAAT-AATATTAATAAAAATA
* *
247071 TTATGAATATTAATAATTAATA
1 TAAT-AATATTAATAATAAATA
247093 TTAACATTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
54 16 0.23
55 3 0.04
57 15 0.22
58 2 0.03
59 5 0.07
60 28 0.41
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.37
Consensus pattern (57 bp):
TAATAATATTAATAATAAATAGGGTAATAAATAACGTTAATAATATTAATAAAAATA
Found at i:247040 original size:13 final size:13
Alignment explanation
Indices: 247024--247058 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
247014 ATAATATTAA
*
247024 TAATAAATAATGG
1 TAATAAATAACGG
*
247037 TAATAAATAACGT
1 TAATAAATAACGG
247050 TAATAAATA
1 TAATAAATA
247059 TTAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (13 bp):
TAATAAATAACGG
Found at i:248279 original size:30 final size:29
Alignment explanation
Indices: 248254--248680 Score: 179
Period size: 29 Copynumber: 14.7 Consensus size: 29
248244 AAACTTTTTC
248254 AAAATTCCATTTTTGAACCCGAACTTTCCA
1 AAAATTCCATTTTT-AACCCGAACTTTCCA
* *
248284 AAAATTACATTTTTACCCTCGAAC-TTCCA
1 AAAATTCCATTTTTAACC-CGAACTTTCCA
* *
248313 AAAATTCCATTTTTAACCCCAATTTTTCCA
1 AAAATTCCATTTTTAACCCGAA-CTTTCCA
* *
248343 AGAATTACCA-TTTTACCCTCGAACTTAT--A
1 AAAATT-CCATTTTTAACC-CGAACTT-TCCA
* **
248372 AAAATTCTATTTTTAACCTCGATTTTTCCA
1 AAAATTCCATTTTTAACC-CGAACTTTCCA
* * *
248402 AAATTTACCA--TTTACCCCCAAAC-TTCCA
1 AAAATT-CCATTTTTA-ACCCGAACTTTCCA
* ** * **
248430 AAAATACCATTTTGGACCTTGATTTTTCCA
1 AAAATTCCATTTTTAACC-CGAACTTTCCA
* * *
248460 AGAATTACCA-TTTTACCCTCGAAC-TTCTA
1 AAAATT-CCATTTTTAACC-CGAACTTTCCA
* **
248489 AAAATTCTATTTTTAACCTCGATTTTTCCA
1 AAAATTCCATTTTTAACC-CGAACTTTCCA
* * *
248519 AAATTTACCA--TTTACCCCCAAAC-TTCCA
1 AAAATT-CCATTTTTA-ACCCGAACTTTCCA
* ** *
248547 AAAATACCATTTTGGACCCCAACTTTTCCA
1 AAAATTCCATTTTTAACCCGAAC-TTTCCA
* *
248577 AAAATTACCA-TTTTAACTCGAAC-TTCTA
1 AAAATT-CCATTTTTAACCCGAACTTTCCA
* * ** *
248605 AAAATTTCA-TTTTCACCTCGATTTTTTC-
1 AAAATTCCATTTTTAACC-CGAACTTTCCA
* *
248633 AAAATTACCA-TTTTACCCCCGAGC-TTCCA
1 AAAATT-CCATTTTTA-ACCCGAACTTTCCA
*
248662 AAAATTCCATTTTTGACCC
1 AAAATTCCATTTTTAACCC
248681 CTTTTTTTCA
Statistics
Matches: 288, Mismatches: 78, Indels: 64
0.67 0.18 0.15
Matches are distributed among these distances:
27 14 0.05
28 62 0.22
29 101 0.35
30 94 0.33
31 17 0.06
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCCGAACTTTCCA
Found at i:248454 original size:58 final size:58
Alignment explanation
Indices: 248254--248762 Score: 523
Period size: 59 Copynumber: 8.7 Consensus size: 58
248244 AAACTTTTTC
**
248254 AAAATTCCATTTTTGAACC-CGAACTTTCCAAAAATTA-CATTTTTACCCTCGAACTTCCA
1 AAAATTCCATTTTT-AACCTCGATTTTTCC-AAAATTACCA-TTTTACCCTCGAACTTCCA
* * **
248313 AAAATTCCATTTTTAACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTATA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAA-AATTACCATTTTACCCTCGAACTTCCA
* * *
248372 AAAATTCTATTTTTAACCTCGATTTTTCCAAAATTTACCA-TTTACCCCCAAACTTCCA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAAAA-TTACCATTTTACCCTCGAACTTCCA
* ** * *
248430 AAAATACCATTTTGGACCTTGATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAA-AATTACCATTTTACCCTCGAACTTCCA
* * *
248489 AAAATTCTATTTTTAACCTCGATTTTTCCAAAATTTACCA-TTTACCCCCAAACTTCCA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAAAA-TTACCATTTTACCCTCGAACTTCCA
* ** * * * * *
248547 AAAATACCATTTTGGACCCCAACTTTTCCAAAAATTACCATTTTA-ACTCGAACTTCTA
1 AAAATTCCATTTTTAACCTCGATTTTTCC-AAAATTACCATTTTACCCTCGAACTTCCA
* * * * *
248605 AAAATTTCA-TTTTCACCTCGATTTTTTCAAAATTACCATTTTACCCCCGAGCTTCCA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAAAATTACCATTTTACCCTCGAACTTCCA
* ** * * *
248662 AAAATTCCATTTTTGACC-CCTTTTTTTCAAAATTACCATTTTACCCTCGGA-TGTCTA
1 AAAATTCCATTTTTAACCTCGATTTTTCCAAAATTACCATTTTACCCTCGAACT-TCCA
*
248719 AAAATTCCATTTTTGATCC-CGAATTTTTCCAAAATTACCATTTT
1 AAAATTCCATTTTT-AACCTCG-ATTTTTCCAAAATTACCATTTT
248763 GCCCCTAAGT
Statistics
Matches: 372, Mismatches: 64, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
56 16 0.04
57 75 0.20
58 125 0.34
59 154 0.41
60 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.38
Consensus pattern (58 bp):
AAAATTCCATTTTTAACCTCGATTTTTCCAAAATTACCATTTTACCCTCGAACTTCCA
Found at i:248461 original size:117 final size:116
Alignment explanation
Indices: 248254--248761 Score: 620
Period size: 117 Copynumber: 4.4 Consensus size: 116
248244 AAACTTTTTC
* ** * *
248254 AAAATTCCATTTTTGAACC-CGAACTTTCCAAAAATTA-CATTTTTACCCTCGAACTTCCAAAAA
1 AAAATTCTATTTTT-AACCTCGATTTTTCC-AAAATTACCA--TTTACCCCCAAACTTCCAAAAA
* ** *
248317 TTCCATTTTTAACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTATA
62 TACCATTTTGGACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
248372 AAAATTCTATTTTTAACCTCGATTTTTCCAAAATTTACCATTTACCCCCAAACTTCCAAAAATAC
1 AAAATTCTATTTTTAACCTCGATTTTTCCAAAA-TTACCATTTACCCCCAAACTTCCAAAAATAC
***
248437 CATTTTGGACCTTGATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
65 CATTTTGGACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
248489 AAAATTCTATTTTTAACCTCGATTTTTCCAAAATTTACCATTTACCCCCAAACTTCCAAAAATAC
1 AAAATTCTATTTTTAACCTCGATTTTTCCAAAA-TTACCATTTACCCCCAAACTTCCAAAAATAC
* * *
248554 CATTTTGGACCCCAACTTTTCCAAAAATTACCATTTTA-ACTCGAACTTCTA
65 CATTTTGGACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
* * * * *
248605 AAAATT-TCA-TTTTCACCTCGATTTTTTCAAAATTACCATTTTACCCCCGAGCTTCCAAAAATT
1 AAAATTCT-ATTTTTAACCTCGATTTTTCCAAAATTACCA-TTTACCCCCAAACTTCCAAAAATA
* * * *
248668 CCATTTTTGACCCC-TTTTTTTCAA-AATTACCATTTTACCCTCGGA-TGTCTA
64 CCATTTTGGACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACT-TCTA
* *
248719 AAAATTCCATTTTTGATCC-CGAATTTTTCCAAAATTACCATTT
1 AAAATTCTATTTTT-AACCTCG-ATTTTTCCAAAATTACCATTT
248762 TGCCCCTAAG
Statistics
Matches: 346, Mismatches: 33, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
113 14 0.04
114 29 0.08
115 65 0.19
116 38 0.11
117 174 0.50
118 24 0.07
119 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.38
Consensus pattern (116 bp):
AAAATTCTATTTTTAACCTCGATTTTTCCAAAATTACCATTTACCCCCAAACTTCCAAAAATACC
ATTTTGGACCCCAATTTTTCCAAGAATTACCATTTTACCCTCGAACTTCTA
Found at i:248646 original size:29 final size:28
Alignment explanation
Indices: 248248--248762 Score: 154
Period size: 29 Copynumber: 17.7 Consensus size: 28
248238 ACCCCTAAAC
*
248248 TTTTTCAAAATT-CCATTTTTGAACC-CGAA
1 TTTTCCAAAATTACCA-TTTT--ACCTCGAA
*
248277 CTTTCCAAAAATTA-CATTTTTACCCTCGAA
1 TTTTCC-AAAATTACCA-TTTTA-CCTCGAA
* *
248307 -CTTCCAAAAATT-CCATTTTTAACC-CCAA
1 TTTTCC-AAAATTACCA-TTTT-ACCTCGAA
248335 TTTTTCCAAGAATTACCATTTTACCCTCGAA
1 -TTTTCCAA-AATTACCATTTTA-CCTCGAA
* * * *
248366 CTTAT-AAAAATT-CTATTTTTAACCTCGAT
1 -TTTTCCAAAATTACCA-TTTT-ACCTCGAA
* *
248395 TTTTCCAAAATTTACCA-TTTACCCCCAA
1 TTTTCCAAAA-TTACCATTTTACCTCGAA
** * * *
248423 ACTTCCAAAAATACCATTTTGGACCTTGAT
1 TTTTCCAAAATTACCATTTT--ACCTCGAA
248453 TTTTCCAAGAATTACCATTTTACCCTCGAA
1 TTTTCCAA-AATTACCATTTTA-CCTCGAA
* * * *
248483 -CTTCTAAAAATT-CTATTTTTAACCTCGAT
1 TTTTC-CAAAATTACCA-TTTT-ACCTCGAA
* *
248512 TTTTCCAAAATTTACCA-TTTACCCCCAA
1 TTTTCCAAAA-TTACCATTTTACCTCGAA
** * *
248540 ACTTCCAAAAATACCATTTTGGACC-CCAA
1 TTTTCCAAAATTACCATTTT--ACCTCGAA
*
248569 CTTTTCCAAAAATTACCATTTTAACTCGAA
1 -TTTTCC-AAAATTACCATTTTACCTCGAA
* * * *
248599 -CTTCTAAAAATT-TCATTTTCACCTCGAT
1 TTTTC-CAAAATTACCATTTT-ACCTCGAA
* *
248627 TTTTTCAAAATTACCATTTTACCCCCG-A
1 TTTTCCAAAATTACCATTTTA-CCTCGAA
** ***
248655 GCTTCCAAAAATT-CCATTTTTGACC-CCTT
1 TTTTCC-AAAATTACCA-TTTT-ACCTCGAA
* *
248684 TTTTTCAAAATTACCATTTTACCCTCGGA
1 TTTTCCAAAATTACCATTTTA-CCTCGAA
* *
248713 -TGTCTAAAAATT-CCATTTTTGATCC-CGAA
1 TTTTC-CAAAATTACCA-TTTT-A-CCTCGAA
248742 TTTTTCCAAAATTACCATTTT
1 -TTTTCCAAAATTACCATTTT
248763 GCCCCTAAGT
Statistics
Matches: 358, Mismatches: 76, Indels: 103
0.67 0.14 0.19
Matches are distributed among these distances:
27 17 0.05
28 89 0.25
29 125 0.35
30 84 0.23
31 43 0.12
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (28 bp):
TTTTCCAAAATTACCATTTTACCTCGAA
Found at i:248819 original size:29 final size:28
Alignment explanation
Indices: 248746--248819 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
248736 CCCGAATTTT
* **
248746 TCCAAAATTACCATTTTGCCCCTAAGTG
1 TCCAAAATTATCATTTTGCCCCTAAGAA
*
248774 TCCAAAATTACTC-TTTTGCCCCTCGAGAA
1 TCCAAAATTA-TCATTTTGCCCCT-AAGAA
*
248803 TCCAAAAATATCATTTT
1 TCCAAAATTATCATTTT
248820 CAACTCCGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 22 0.58
29 16 0.42
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (28 bp):
TCCAAAATTATCATTTTGCCCCTAAGAA
Found at i:251258 original size:24 final size:23
Alignment explanation
Indices: 251210--251284 Score: 70
Period size: 24 Copynumber: 3.4 Consensus size: 23
251200 CCTATAACTT
* *
251210 CTACCGATACAAGTAT--TTAGA
1 CTACCGATACTACTATAATTAGA
*
251231 CTACTGATACTACTATAATTAGAA
1 CTACCGATACTACTATAATTAG-A
*
251255 CTACCGATACTTCTATAA-T-G-
1 CTACCGATACTACTATAATTAGA
251275 CTACCGATAC
1 CTACCGATAC
251285 AATGCTAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 10 0.22
21 13 0.28
22 1 0.02
23 5 0.11
24 17 0.37
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.31
Consensus pattern (23 bp):
CTACCGATACTACTATAATTAGA
Found at i:252058 original size:94 final size:94
Alignment explanation
Indices: 251892--252210 Score: 392
Period size: 94 Copynumber: 3.4 Consensus size: 94
251882 ATGTCATTTA
* * * *
251892 TGTTACCGGTATACGATGCTGCTCACACTAAGCTGACGAGGACTTGCAACATATAAGATACCTCA
1 TGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGAGGTACCTCA
* * *
251957 ACCATCGATATGGTATTTGTTCATACAAC
66 ACCATCGATATGGTATCTGTACATATAAC
* * *
251986 TATTACCAGTATACGATGCTGCTTACACTAAGCTGACGAGGACTCGCAACATATGTGGTACCTCA
1 TGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGAGGTACCTCA
*** *
252051 GTTATCGATATGATATCTGTACATATAAC
66 ACCATCGATATGGTATCTGTACATATAAC
* * * * * * *
252080 TGTTACCAGTATATGATGCTACTCAAACTAAGTTGATGAGGACTCGCAACATATGCGGCACCTCA
1 TGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGAGGTACCTCA
*
252145 ACCATCGATATGGTATCTATACATATAAC
66 ACCATCGATATGGTATCTGTACATATAAC
* **
252174 TGTT-CC-CTA-ACGATGCTTTTCACACTAAGCTGACGAG
1 TGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAG
252211 AATATTCAAA
Statistics
Matches: 190, Mismatches: 35, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
91 22 0.12
92 2 0.01
93 2 0.01
94 164 0.86
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (94 bp):
TGTTACCAGTATACGATGCTGCTCACACTAAGCTGACGAGGACTCGCAACATATGAGGTACCTCA
ACCATCGATATGGTATCTGTACATATAAC
Found at i:252651 original size:26 final size:27
Alignment explanation
Indices: 252608--252660 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
252598 TTAAATCAAC
252608 ATGAATTTTTAATCA-TTTTATACAAAT
1 ATGAATTTTTAATCATTTTTATA-AAAT
* *
252635 ATGACTTTTTGAT-ATTTTTATAAAAT
1 ATGAATTTTTAATCATTTTTATAAAAT
252661 TACCCTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.51
Consensus pattern (27 bp):
ATGAATTTTTAATCATTTTTATAAAAT
Found at i:257105 original size:24 final size:24
Alignment explanation
Indices: 257073--257124 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
257063 AAAATTGAAA
257073 AAAATATAAATAAATATATTTTTT
1 AAAATATAAATAAATATATTTTTT
257097 AAAATATAAATAAATATATTTTTT
1 AAAATATAAATAAATATATTTTTT
257121 AAAA
1 AAAA
257125 ATAGAAGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAAATATAAATAAATATATTTTTT
Found at i:258761 original size:19 final size:18
Alignment explanation
Indices: 258739--258779 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
258729 ATCTCGATCG
258739 AATTAATTCG-ATTAATATT
1 AATTAA-TCGAATTAAT-TT
258758 AATTAATCGAATTAATTT
1 AATTAATCGAATTAATTT
258776 AATT
1 AATT
258780 TTACTCGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTAATCGAATTAATTT
Found at i:259085 original size:31 final size:31
Alignment explanation
Indices: 259043--259109 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
259033 GCTATAGTAC
259043 TATT-TCATTTTGAAAATTTTAAACTAATAA
1 TATTCTCATTTTGAAAATTTTAAACTAATAA
259073 TATTCTCATTTTGAAAATTTTAAACTAATAA
1 TATTCTCATTTTGAAAATTTTAAACTAATAA
259104 TATTCT
1 TATTCT
259110 TTCATTATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (31 bp):
TATTCTCATTTTGAAAATTTTAAACTAATAA
Found at i:260194 original size:170 final size:171
Alignment explanation
Indices: 259921--260238 Score: 426
Period size: 170 Copynumber: 1.9 Consensus size: 171
259911 CAAATACCGT
* * * * * * **
259921 TATAGAACATGATCTTTAGCGGGGTTTTTCTCACAAATGCCACTATAGAACATGGTCTTTATTGA
1 TATAAAACATGATCTTTAACGGCGCTTTTCCCACAAAAGCCACTATAGAACATGGTCTTTAGCGA
* *
259986 TGTTTTCCCCACAAACACCGCTATAGAACATTGTCTTTAG-TGGCGCTTTACCCACAAACGCCAC
66 TGTTTTCCCCACAAACACCGCTATAGAACATGGTCTTTAGCT-GCGCTTTACCCACAAACGCAAC
260050 TATAGAGCATAATCTTTAGCGGTGTTTTTCTCATAACGCTGC
130 TATAGAGCATAATCTTTAGCGGTGTTTTTCTCATAACGCTGC
* * *
260092 TATAAAACATTATCTTTAACGGCGCTTTTCCCACAAAAGCCGCTATAGAACAT-GTCTTTAGCGG
1 TATAAAACATGATCTTTAACGGCGCTTTTCCCACAAAAGCCACTATAGAACATGGTCTTTAGCGA
* * * *
260156 TGTTTTTCCCACAAA-AGTCGCTATAGAACATGGTCTTTAGCTGCGCTTTACCTATAAACGCAAC
66 TGTTTTCCCCACAAACA-CCGCTATAGAACATGGTCTTTAGCTGCGCTTTACCCACAAACGCAAC
**
260220 TATAGAGCATGGTCTTTAG
130 TATAGAGCATAATCTTTAG
260239 TGACACTTTT
Statistics
Matches: 126, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
169 1 0.01
170 79 0.63
171 46 0.37
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (171 bp):
TATAAAACATGATCTTTAACGGCGCTTTTCCCACAAAAGCCACTATAGAACATGGTCTTTAGCGA
TGTTTTCCCCACAAACACCGCTATAGAACATGGTCTTTAGCTGCGCTTTACCCACAAACGCAACT
ATAGAGCATAATCTTTAGCGGTGTTTTTCTCATAACGCTGC
Found at i:260223 original size:85 final size:86
Alignment explanation
Indices: 259827--260238 Score: 354
Period size: 85 Copynumber: 4.8 Consensus size: 86
259817 TTATGTGGAA
* * * ** *
259827 AAACGCCGCTATAGAACATGATTTTTGGC-GATACTTT-CCCACAAACG-TAGCTATAGAACATG
1 AAACACCGCTATAGAACATGATCTTTAGCTG-CGCTTTACCCACAAACGCCA-CTATAGAACATG
* **
259889 GTCTTTAGCGGTGCTTTGACCAC
64 GTCTTTAGCGGTGTTTTTCCCAC
* * * * * * * *
259912 AAATACCGTTATAGAACATGATCTTTAGCGGGGTTTTTCTCACAAATGCCACTATAGAACATGGT
1 AAACACCGCTATAGAACATGATCTTTAGCTGCGCTTTACCCACAAACGCCACTATAGAACATGGT
** * *
259977 CTTTATTGATGTTTTCCCCAC
66 CTTTAGCGGTGTTTTTCCCAC
* *
259998 AAACACCGCTATAGAACATTG-TCTTTAG-TGGCGCTTTACCCACAAACGCCACTATAGAGCATA
1 AAACACCGCTATAGAACA-TGATCTTTAGCT-GCGCTTTACCCACAAACGCCACTATAGAACATG
* *
260061 ATCTTTAGCGGTGTTTTTCTCA-
64 GTCTTTAGCGGTGTTTTTCCCAC
* * * * * * * * * *
260083 TAACGCTGCTATAAAACATTATCTTTAACGGCGCTTTTCCCACAAAAGCCGCTATAGAACAT-GT
1 AAACACCGCTATAGAACATGATCTTTAGCTGCGCTTTACCCACAAACGCCACTATAGAACATGGT
260147 CTTTAGCGGTGTTTTTCCCAC
66 CTTTAGCGGTGTTTTTCCCAC
* * * * * *
260168 AAA-AGTCGCTATAGAACATGGTCTTTAGCTGCGCTTTACCTATAAACGCAACTATAGAGCATGG
1 AAACA-CCGCTATAGAACATGATCTTTAGCTGCGCTTTACCCACAAACGCCACTATAGAACATGG
260232 TCTTTAG
65 TCTTTAG
260239 TGACACTTTT
Statistics
Matches: 255, Mismatches: 62, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
84 21 0.08
85 120 0.47
86 111 0.44
87 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (86 bp):
AAACACCGCTATAGAACATGATCTTTAGCTGCGCTTTACCCACAAACGCCACTATAGAACATGGT
CTTTAGCGGTGTTTTTCCCAC
Found at i:260258 original size:43 final size:43
Alignment explanation
Indices: 259827--260258 Score: 302
Period size: 43 Copynumber: 10.1 Consensus size: 43
259817 TTATGTGGAA
* *
259827 AAACGCCGCTATAGAACATGAT-TTT--TGGCGATACTTTCCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCT--TTTCCCAC
** * * **
259869 AAACGTAGCTATAGAACATGGTCTTTAGCGGTGCTTTGACCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
** * * * * * *
259912 AAATACCGTTATAGAACATGATCTTTAGCGGGGTTTTTCTCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
* * * **
259955 AAATGCCACTATAGAACATGGTCTTTATTGATG-TTTTCCCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTT-CCCAC
* * *
259998 AAACACCGCTATAGAACATTGTCTTTAGTGGCGCTTTACCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
* * ** * * * *
260041 AAACGCCACTATAGAGCATAATCTTTAGCGGTGTTTTTCTCA-
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
* * * ** **
260083 TAACGCTGCTATAAAACATTATCTTTAACGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
* * * *
260126 AAAAGCCGCTATAGAACAT-GTCTTTAGCGGTGTTTTTCCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
* * * * *
260168 AAAAGTCGCTATAGAACATGGTCTTTAGCT-GCGCTTTACCTAT
1 AAACGCCGCTATAGAACATGGTCTTTAG-TGGCGCTTTTCCCAC
** * * *
260211 AAACGCAACTATAGAGCATGGTCTTTAGTGACACTTTTCCCAC
1 AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
260254 AAACG
1 AAACG
260259 TCACTAACAT
Statistics
Matches: 300, Mismatches: 81, Indels: 17
0.75 0.20 0.04
Matches are distributed among these distances:
42 93 0.31
43 200 0.67
44 3 0.01
45 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGGTCTTTAGTGGCGCTTTTCCCAC
Found at i:269345 original size:42 final size:42
Alignment explanation
Indices: 269282--269443 Score: 141
Period size: 42 Copynumber: 3.9 Consensus size: 42
269272 TTTTACGACG
* * *
269282 TTTTCCCATAAATGTCACTATTGCTCTTTACCTTTTGCGGTA
1 TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTTGCGGTA
*** * * *
269324 TTTATGGGA-AAGCGCCGCTATTG--CTTTACCTTTTGTGGTG
1 TTT-TCCCATAAACGCCGCTATTGCTCTTTACCTTTTGCGGTA
* * * *
269364 TTTTCCCATAAACGCCGCTATTGCTCTTTATCTTTTACAGTG
1 TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTTGCGGTA
* * * *
269406 TTTTACCATAAATGCCGCTATTTCTTTTTACCTTTTGC
1 TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTTGC
269444 AAAGTTTTTT
Statistics
Matches: 93, Mismatches: 23, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
39 2 0.02
40 31 0.33
42 58 0.62
43 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (42 bp):
TTTTCCCATAAACGCCGCTATTGCTCTTTACCTTTTGCGGTA
Found at i:269451 original size:42 final size:42
Alignment explanation
Indices: 269363--269475 Score: 127
Period size: 42 Copynumber: 2.7 Consensus size: 42
269353 CTTTTGTGGT
* * * * **
269363 GTTTTCCCATAAACGCCGCTATTGCTCTTTATCTTTTACAGT
1 GTTTTACCATAAATGCCGCTATTGCTTTTTACCTTTTACAAA
* *
269405 GTTTTACCATAAATGCCGCTATTTCTTTTTACCTTTTGCAAA
1 GTTTTACCATAAATGCCGCTATTGCTTTTTACCTTTTACAAA
* *
269447 GTTTTTTCCATAAATGCTGCTATTGCTTT
1 G-TTTTACCATAAATGCCGCTATTGCTTT
269476 ACATTTTGTG
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 35 0.59
43 24 0.41
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (42 bp):
GTTTTACCATAAATGCCGCTATTGCTTTTTACCTTTTACAAA
Found at i:271085 original size:17 final size:18
Alignment explanation
Indices: 271063--271098 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
271053 CTTGTTTAGG
*
271063 AATG-TTTTTATCTCAAA
1 AATGTTTTTTATCCCAAA
271080 AATGTTTTTTATCCCAAA
1 AATGTTTTTTATCCCAAA
271098 A
1 A
271099 GTACTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (18 bp):
AATGTTTTTTATCCCAAA
Found at i:277188 original size:78 final size:78
Alignment explanation
Indices: 277052--277284 Score: 252
Period size: 78 Copynumber: 3.0 Consensus size: 78
277042 AATTGTATCC
* * * * *
277052 TGTTTTCAAACAGAAATAAATTGAATAATTCTCTTTGAAGATTTATTCCTGTCATTCAATAAAAT
1 TGTTTCCAAACAGAAATAAATTAAATAATTCTGTTTCAAGATTTATTCCTATCATTCAATAAAAT
*
277117 TTATTCGATTTTT
66 TTATTCAATTTTT
* * * * * * *
277130 TGTTTCCAAACATAAAGT-ATTTAAATAATTTTGTTTCAAGATTTATTCATATCTTTCAACAGAA
1 TGTTTCCAAACAGAAA-TAAATTAAATAATTCTGTTTCAAGATTTATTCCTATCATTCAATAAAA
* *
277194 TTTAATCAAGTTTT
65 TTTATTCAATTTTT
* ** * *
277208 TGTTTTCAAACAGAAATAAATTGCACAATTCTGTTTCAAGATTCTATTCCTATCGTTCAATAAAA
1 TGTTTCCAAACAGAAATAAATTAAATAATTCTGTTTCAAGATT-TATTCCTATCATTCAATAAAA
*
277273 TTGATTCAATTT
65 TTTATTCAATTT
277285 CTATTGTTAA
Statistics
Matches: 123, Mismatches: 29, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
77 1 0.01
78 95 0.77
79 27 0.22
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (78 bp):
TGTTTCCAAACAGAAATAAATTAAATAATTCTGTTTCAAGATTTATTCCTATCATTCAATAAAAT
TTATTCAATTTTT
Found at i:277976 original size:32 final size:32
Alignment explanation
Indices: 277938--278005 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
277928 ATTAGAGAGA
277938 ATTTCAAAACATGACAACAAAATATGCTATTT
1 ATTTCAAAACATGACAACAAAATATGCTATTT
277970 ATTTCAAAACATGACAACAAAATATGCTATTT
1 ATTTCAAAACATGACAACAAAATATGCTATTT
278002 ATTT
1 ATTT
278006 GACCATATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.34
Consensus pattern (32 bp):
ATTTCAAAACATGACAACAAAATATGCTATTT
Found at i:280361 original size:21 final size:21
Alignment explanation
Indices: 280337--280379 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
280327 CAAATATTAA
280337 ATTGATTTAATTGATATAATG
1 ATTGATTTAATTGATATAATG
*
280358 ATTGATTTAATTGATTTAATG
1 ATTGATTTAATTGATATAATG
280379 A
1 A
280380 CTCCTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (21 bp):
ATTGATTTAATTGATATAATG
Found at i:280387 original size:21 final size:21
Alignment explanation
Indices: 280341--280396 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
280331 TATTAAATTG
* *
280341 ATTTAATTGATATAATGATTG
1 ATTTAATTGATATAATGACTC
*
280362 ATTTAATTGATTTAATGACTC
1 ATTTAATTGATATAATGACTC
* *
280383 CTTTAATTCATATA
1 ATTTAATTGATATA
280397 TCAGTTTGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (21 bp):
ATTTAATTGATATAATGACTC
Found at i:283134 original size:16 final size:16
Alignment explanation
Indices: 283115--283153 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
283105 GTTTAAATTT
*
283115 ATTTGAATTTATATAA
1 ATTTAAATTTATATAA
*
283131 ATTTAAATTTATTTAA
1 ATTTAAATTTATATAA
283147 ATTTAAA
1 ATTTAAA
283154 ATAAATAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTAAATTTATATAA
Found at i:283626 original size:23 final size:25
Alignment explanation
Indices: 283570--283627 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
283560 TTTCGAGCAG
*
283570 TTTGAAATTAATACATACAAGCTTAT
1 TTTGAAATTAATACA-ACAAGCATAT
*
283596 TTTCGAAATTAATAC-ACGAG-ATAT
1 TTT-GAAATTAATACAACAAGCATAT
283620 TTTGAAAT
1 TTTGAAAT
283628 CAAACACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 5 0.17
24 6 0.21
25 4 0.14
26 3 0.10
27 11 0.38
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (25 bp):
TTTGAAATTAATACAACAAGCATAT
Found at i:283878 original size:17 final size:17
Alignment explanation
Indices: 283847--283884 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
283837 AAAAATGTAT
283847 TAAACAAATAATATTAAA
1 TAAACAAATAATATT-AA
*
283865 TAAAC-AATATTATTAA
1 TAAACAAATAATATTAA
283881 TAAA
1 TAAA
283885 AAAAGAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 8 0.42
18 5 0.26
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAACAAATAATATTAA
Found at i:284973 original size:29 final size:28
Alignment explanation
Indices: 284941--285185 Score: 176
Period size: 29 Copynumber: 8.6 Consensus size: 28
284931 TGTTTTGTCT
284941 AAAAATCACATTTTTACCCGTGAACTTCC
1 AAAAATCACATTTTTACCC-TGAACTTCC
* * *
284970 AAAAATTACATTTTTGCCCCCGAACTTCC
1 AAAAATCACATTTTT-ACCCTGAACTTCC
** * *
284999 AAAGTTCACATTTTTACCTCAGAACTTCT
1 AAAAATCACATTTTTACC-CTGAACTTCC
* * * *
285028 TAAAATTACA-TTTT-CCCTCAAACTTCT
1 AAAAATCACATTTTTACCCT-GAACTTCC
**
285055 AAAAATCACA-TTTTACCCCCAAACTTCTC
1 AAAAATCACATTTTTA-CCCTGAACTTC-C
* * *
285084 AAAAATTACATTTTTGCCCTTGAACTTTC
1 AAAAATCACATTTTTACCC-TGAACTTCC
*
285113 -AAAATCACA-TTTTACCCTCAAACTTCTC
1 AAAAATCACATTTTTACCCT-GAACTTC-C
* * ** *
285141 AAAAATTATATTTTTACCCCCAACTTCT
1 AAAAATCACATTTTTACCCTGAACTTCC
285169 AAAAATCACATTTTTAC
1 AAAAATCACATTTTTAC
285186 TTTTGAATTT
Statistics
Matches: 169, Mismatches: 35, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
26 2 0.01
27 33 0.20
28 37 0.22
29 77 0.46
30 20 0.12
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (28 bp):
AAAAATCACATTTTTACCCTGAACTTCC
Found at i:285166 original size:114 final size:113
Alignment explanation
Indices: 284938--285182 Score: 318
Period size: 114 Copynumber: 2.2 Consensus size: 113
284928 CCATGTTTTG
***
284938 TCTAAAAATCACATTTTTACCCGTGAACTTCCAAAAATTACATTTTTGCCCCCGAACTTCCAAAG
1 TCTAAAAATCACA-TTTTACCCCCAAACTTCCAAAAATTACATTTTTGCCCCCGAACTTCCAAAG
* *
285003 TTCACATTTTTACCTCAGAACTTCTTAAAATTACATTTTCCCTCAAACT
65 ATCACATTTTTACCTCAGAACTTCTAAAAATTACATTTTCCCTCAAACT
** *
285052 TCTAAAAATCACATTTTACCCCCAAACTTCTCAAAAATTACATTTTTGCCCTTGAACTTTCAAA-
1 TCTAAAAATCACATTTTACCCCCAAACTTC-CAAAAATTACATTTTTGCCCCCGAACTTCCAAAG
* *
285116 ATCACA-TTTTACCCTCA-AACTTCTCAAAAATTATATTTTTACCC-CCAACT
65 ATCACATTTTTA-CCTCAGAACTTCT-AAAAATTACA-TTTT-CCCTCAAACT
285166 TCTAAAAATCACATTTT
1 TCTAAAAATCACATTTT
285183 TACTTTTGAA
Statistics
Matches: 116, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
112 12 0.10
113 32 0.28
114 69 0.59
115 3 0.03
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (113 bp):
TCTAAAAATCACATTTTACCCCCAAACTTCCAAAAATTACATTTTTGCCCCCGAACTTCCAAAGA
TCACATTTTTACCTCAGAACTTCTAAAAATTACATTTTCCCTCAAACT
Found at i:285192 original size:85 final size:86
Alignment explanation
Indices: 284942--285252 Score: 289
Period size: 85 Copynumber: 3.6 Consensus size: 86
284932 GTTTTGTCTA
* * * * **
284942 AAAATCACATTTTTACCCGT-GAACTTC-CAAAAATTACATTTTTGCCCCCGAACTTCCAAAGTT
1 AAAATCACA-TTTTACCC-TCAAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCTAAAAAT
** *
285005 CACATTTTTACCTCAGAACTTCTT
64 CACATTTTTACCTTTGAACTT-TC
* * *
285029 AAAATTACATTTT-CCCTCAAACTTCT-AAAAATCACA-TTTTACCCCCAAACTTCTCAAAAATT
1 AAAATCACATTTTACCCTCAAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCT-AAAAATC
* *
285091 ACATTTTTGCCCTTGAACTTTC
65 ACATTTTTACCTTTGAACTTTC
*
285113 AAAATCACATTTTACCCTCAAACTTCTCAAAAATTATATTTTTACCCCC-AACTTCTAAAAATCA
1 AAAATCACATTTTACCCTCAAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCTAAAAATCA
* *
285177 CATTTTTACTTTTGAATTTTCC
66 CATTTTTACCTTTGAACTTT-C
* * * * *
285199 TAAAATAACATTTTTACTCTTAAAACTTC-C-AAAATTAC-GTTTTAACCCCAAACT
1 -AAAATCACA-TTTTAC-CCTCAAACTTCTCAAAAATTACATTTTTACCCCCAAACT
285253 CTTCAAAACT
Statistics
Matches: 185, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
84 29 0.16
85 74 0.40
86 29 0.16
87 37 0.20
88 7 0.04
89 9 0.05
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (86 bp):
AAAATCACATTTTACCCTCAAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCTAAAAATCA
CATTTTTACCTTTGAACTTTC
Found at i:285233 original size:29 final size:30
Alignment explanation
Indices: 285162--285233 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
285152 TTTTACCCCC
* * *
285162 AACTT-CTAAAAATCACATTTTTACTTTTGA
1 AACTTCCT-AAAATAACATTTTTACTCTTAA
**
285192 ATTTTCCTAAAATAACATTTTTACTCTTAA
1 AACTTCCTAAAATAACATTTTTACTCTTAA
285222 AACTTCC-AAAAT
1 AACTTCCTAAAAT
285234 TACGTTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
29 5 0.15
30 27 0.79
31 2 0.06
ACGTcount: A:0.39, C:0.18, G:0.01, T:0.42
Consensus pattern (30 bp):
AACTTCCTAAAATAACATTTTTACTCTTAA
Found at i:295533 original size:49 final size:49
Alignment explanation
Indices: 295466--295559 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
295456 AAGGGCATCT
295466 AAAAAAAGGGATCGAGATGAAAACCCGTAAAGGGCGTCTTGAAACTAAA
1 AAAAAAAGGGATCGAGATGAAAACCCGTAAAGGGCGTCTTGAAACTAAA
295515 AAAAAAAGGGATCGAGATGAAAACCCGTAAAGGGCGTCTTGAAAC
1 AAAAAAAGGGATCGAGATGAAAACCCGTAAAGGGCGTCTTGAAAC
295560 CAAAGGAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.46, C:0.15, G:0.26, T:0.14
Consensus pattern (49 bp):
AAAAAAAGGGATCGAGATGAAAACCCGTAAAGGGCGTCTTGAAACTAAA
Found at i:296535 original size:39 final size:39
Alignment explanation
Indices: 296492--297056 Score: 302
Period size: 39 Copynumber: 14.6 Consensus size: 39
296482 TCTCGATCCT
* * *
296492 TTACCCCGAGCCTGGGGTAGATCATCATCAATAAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTC
* * * * * *
296531 TTACCCTGAGCCTGGGGCAGAT-TTCAACCATTCGATCTT
1 TTACCCCGAGCCTGGGGCAGATCATC-ATCAGTCAATCTC
* * *
296570 TTACCCAGAGCCT-GGGCAGATCACCATCAGCCAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTC
* * * * * * * ***
296608 TTACACCGATCATAGGGCAGATTA-CAACATTTGTTCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTC
* * * * *
296646 TTACCCTGAGCTTGGGGTAGATCACCATCA-ACTAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTC-AATCTC
* * *
296685 TTACCCCGATCATGGGGCAGAT--TGCAGCCA-TCCAATCTC
1 TTACCCCGAGCCTGGGGCAGATCAT-CA-TCAGT-CAATCTC
*
296724 TTACCCCGAGCCTAGGGCAGATCATCATCAG-CAAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTC-AATCTC
* * * * *
296763 TTACCTCGAGCTTGGGGCAGAT--TGCAACCATTCGAT-TC
1 TTACCCCGAGCCTGGGGCAGATCAT-C-ATCAGTCAATCTC
* * *
296801 TTACCTCGAGCCTAGGGTAGATCATCATCAG-CAAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTC-AATCTC
* * * *
296840 TTACCTCAAGCCTGGGGCAGAT--TGCAACCAGTCGATCTC
1 TTACCCCGAGCCTGGGGCAGATCAT-C-ATCAGTCAATCTC
* *
296879 TTACCCTGAGCCTGGGGTAGATCATCATCAG-CAAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTC-AATCTC
* * * * *
296918 TTACCCCGAGCCTAGGGCAGAT--TGCAACTATTCGATCTT
1 TTACCCCGAGCCTGGGGCAGATCAT-CATC-AGTCAATCTC
* * * * *
296957 TTACCTCGAGCTTGGGGCAAATCACCATCAGCCAATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTC
* * ** * *
296996 TTACCCCAAGCATGGGGCAGATTGT-AGTCATTCGATCTC
1 TTACCCCGAGCCTGGGGCAGATCATCA-TCAGTCAATCTC
* *
297035 TTACCCCGATCATGGGGCAGAT
1 TTACCCCGAGCCTGGGGCAGAT
297057 TGCAATCAGT
Statistics
Matches: 393, Mismatches: 102, Indels: 62
0.71 0.18 0.11
Matches are distributed among these distances:
37 4 0.01
38 88 0.22
39 288 0.73
40 11 0.03
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (39 bp):
TTACCCCGAGCCTGGGGCAGATCATCATCAGTCAATCTC
Found at i:296762 original size:78 final size:78
Alignment explanation
Indices: 296484--297043 Score: 633
Period size: 78 Copynumber: 7.2 Consensus size: 78
296474 ATTGAAGATC
** * *
296484 TCGATC-CTTTACCCCGAGCCTGGGGTAGATCATCATCAATAAATCTCTTACCCTGAGCCTGGGG
1 TCGATCTC-TTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGG
*
296548 CAGATTTCAACCAT
65 CAGATTGCAACCAT
* * * * * * * *
296562 TCGATCTTTTACCCAGAGCCT-GGGCAGATCACCATCAGCCAATCTCTTACACCGATCATAGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
*
296626 AGATTACAA-CAT
66 AGATTGCAACCAT
* * * * * * * *
296638 TTGTTCTCTTACCCTGAGCTTGGGGTAGATCACCATCAACTAATCTCTTACCCCGATCATGGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
*
296703 AGATTGCAGCCAT
66 AGATTGCAACCAT
* * * * * *
296716 CCAATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGCAAATCTCTTACCTCGAGCTTGGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
296781 AGATTGCAACCAT
66 AGATTGCAACCAT
* * * * *
296794 TCGAT-TCTTACCTCGAGCCTAGGGTAGATCATCATCAGCAAATCTCTTACCTCAAGCCTGGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
*
296858 AGATTGCAACCAG
66 AGATTGCAACCAT
* * *
296871 TCGATCTCTTACCCTGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCCTAGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
*
296936 AGATTGCAACTAT
66 AGATTGCAACCAT
* * * * * * * *
296949 TCGATCTTTTACCTCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCAAGCATGGGGC
1 TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
* **
297014 AGATTGTAGTCAT
66 AGATTGCAACCAT
297027 TCGATCTCTTACCCCGA
1 TCGATCTCTTACCCCGA
297044 TCATGGGGCA
Statistics
Matches: 406, Mismatches: 72, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
76 19 0.05
77 158 0.39
78 229 0.56
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (78 bp):
TCGATCTCTTACCCCGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACCCCGAGCATGGGGC
AGATTGCAACCAT
Found at i:296823 original size:155 final size:154
Alignment explanation
Indices: 296484--297043 Score: 635
Period size: 155 Copynumber: 3.6 Consensus size: 154
296474 ATTGAAGATC
* * ** *
296484 TCGATC-CTTTACCCCGAGCCTGGGGTAGATCATCATCAA-TAAATCTCTTACCCTGAGCCTGGG
1 TCGATCTC-TTACCTCGAGCCTGGGGTAGATCACCATCAACT-AATCTCTTACCCCAAGCATGGG
* * * * *
296547 GCAGATTTCAACCATTCGATCTTTTACCCAGAGCCTGGGCAGATCACCATCAGCCAATCTCTTAC
64 GCAGATTGCAACCATTCGATCTCTTACCCCGAGCCTGGGCAGATCATCATCAGCAAATCTCTTAC
* *
296612 ACCGATCATAGGGCAGATTACAA-CAT
129 -CCGAGCATAGGGCAGATTGCAACCAT
* * * * *
296638 TTGTTCTCTTACC-CTGAGCTTGGGGTAGATCACCATCAACTAATCTCTTACCCCGATCATGGGG
1 TCGATCTCTTACCTC-GAGCCTGGGGTAGATCACCATCAACTAATCTCTTACCCCAAGCATGGGG
* * *
296702 CAGATTGCAGCCATCCAATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGCAAATCTCTTAC
65 CAGATTGCAACCATTCGATCTCTTACCCCGAGCCT-GGGCAGATCATCATCAGCAAATCTCTTAC
* *
296767 CTCGAGCTTGGGGCAGATTGCAACCAT
129 C-CGAGCATAGGGCAGATTGCAACCAT
* * * * * *
296794 TCGAT-TCTTACCTCGAGCCTAGGGTAGATCATCATCAGCAAATCTCTTACCTCAAGCCTGGGGC
1 TCGATCTCTTACCTCGAGCCTGGGGTAGATCACCATCAACTAATCTCTTACCCCAAGCATGGGGC
* * *
296858 AGATTGCAACCAGTCGATCTCTTACCCTGAGCCTGGGGTAGATCATCATCAGCAAATCTCTTACC
66 AGATTGCAACCATTCGATCTCTTACCCCGAGCCT-GGGCAGATCATCATCAGCAAATCTCTTA-C
* *
296923 CCGAGCCTAGGGCAGATTGCAACTAT
129 CCGAGCATAGGGCAGATTGCAACCAT
* * * * * *
296949 TCGATCTTTTACCTCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCCAAGCATGGGGC
1 TCGATCTCTTACCTCGAGCCTGGGGTAGATCACCATCAACTAATCTCTTACCCCAAGCATGGGGC
* **
297014 AGATTGTAGTCATTCGATCTCTTACCCCGA
66 AGATTGCAACCATTCGATCTCTTACCCCGA
297044 TCATGGGGCA
Statistics
Matches: 343, Mismatches: 54, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
153 1 0.00
154 81 0.24
155 177 0.52
156 84 0.24
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (154 bp):
TCGATCTCTTACCTCGAGCCTGGGGTAGATCACCATCAACTAATCTCTTACCCCAAGCATGGGGC
AGATTGCAACCATTCGATCTCTTACCCCGAGCCTGGGCAGATCATCATCAGCAAATCTCTTACCC
GAGCATAGGGCAGATTGCAACCAT
Found at i:297510 original size:17 final size:17
Alignment explanation
Indices: 297471--297508 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
297461 AAACCCATTC
*
297471 TTAAATTTACTTTAAGT
1 TTAAATTTACTTTAAAT
297488 TTAAATTTA-TTTAAAT
1 TTAAATTTACTTTAAAT
297504 TTAAA
1 TTAAA
297509 ATAAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAATTTACTTTAAAT
Found at i:298220 original size:14 final size:14
Alignment explanation
Indices: 298201--298233 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
298191 TTCAAGAACG
*
298201 TATTAAATAAATAA
1 TATTAAATAAACAA
298215 TATTAAATAAACAA
1 TATTAAATAAACAA
298229 TATTA
1 TATTA
298234 TTATTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
TATTAAATAAACAA
Found at i:299322 original size:30 final size:30
Alignment explanation
Indices: 299286--299506 Score: 183
Period size: 30 Copynumber: 7.6 Consensus size: 30
299276 TATTTTGCCT
*
299286 AAAAATTACATTTTTGCCCTCGAACTTCTC
1 AAAAATTACATTTTTACCCTCGAACTTCTC
* *
299316 AAAAATTTCATTTTTACTCTCGAACTTCT-
1 AAAAATTACATTTTTACCCTCGAACTTCTC
* *
299345 -AAAATTCATATTTTTAACCTCGAACTTCTC
1 AAAAATT-ACATTTTTACCCTCGAACTTCTC
* * *
299375 AAAAATTAAAATTTT-CACTTCGAACTTC-C
1 AAAAATTACATTTTTAC-CCTCGAACTTCTC
* * *
299404 -AAATTTACATTTTTACCC-CTAAACTTCTT
1 AAAAATTACATTTTTACCCTC-GAACTTCTC
*
299433 AAAAATTACA-TTTTACCC-CAAACTT-TC
1 AAAAATTACATTTTTACCCTCGAACTTCTC
* * * * *
299460 AAAAATCACGTTTTTATCCTTGAATTTC-C
1 AAAAATTACATTTTTACCCTCGAACTTCTC
*
299489 AAAAATGACATTTTTACC
1 AAAAATTACATTTTTACC
299507 TCCTAAAACT
Statistics
Matches: 152, Mismatches: 28, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
27 10 0.07
28 37 0.24
29 49 0.32
30 50 0.33
31 6 0.04
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.39
Consensus pattern (30 bp):
AAAAATTACATTTTTACCCTCGAACTTCTC
Found at i:299357 original size:29 final size:29
Alignment explanation
Indices: 299284--299505 Score: 138
Period size: 29 Copynumber: 7.7 Consensus size: 29
299274 TTTATTTTGC
* *
299284 CTAAAAATTACATTTTTGCCCTCGAACTT
1 CTAAAAATTACATTTTTACTCTCGAACTT
*
299313 CTCAAAAATTTCATTTTTACTCTCGAACTT
1 CT-AAAAATTACATTTTTACTCTCGAACTT
*
299343 CT-AAAATTCATATTTTTAAC-CTCGAACTT
1 CTAAAAATT-ACATTTTT-ACTCTCGAACTT
* *
299372 CTCAAAAATTAAAATTTTCACT-TCGAACTT
1 CT-AAAAATT-ACATTTTTACTCTCGAACTT
* * * *
299402 C-CAAATTTACATTTTTAC-CCCTAAACTT
1 CTAAAAATTACATTTTTACTCTC-GAACTT
* *
299430 CTTAAAAATTACA-TTTTAC-CCCAAACTT
1 C-TAAAAATTACATTTTTACTCTCGAACTT
* * * *
299458 -TCAAAAATCACGTTTTTA-TCCTTGAATTT
1 CT-AAAAATTACATTTTTACT-CTCGAACTT
* *
299487 CCAAAAATGACATTTTTAC
1 CTAAAAATTACATTTTTAC
299506 CTCCTAAAAC
Statistics
Matches: 152, Mismatches: 25, Indels: 31
0.73 0.12 0.15
Matches are distributed among these distances:
26 1 0.01
27 17 0.11
28 28 0.18
29 47 0.31
30 47 0.31
31 12 0.08
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.39
Consensus pattern (29 bp):
CTAAAAATTACATTTTTACTCTCGAACTT
Found at i:299358 original size:59 final size:56
Alignment explanation
Indices: 299287--299446 Score: 178
Period size: 59 Copynumber: 2.8 Consensus size: 56
299277 ATTTTGCCTA
* * *
299287 AAAATTACATTTTTGCCCTCGAACTTCTCAAAAATTTCATTTTTACTCTCGAACTTC
1 AAAATTACATTTTTACCCTCGAACTTCTCAAAAATTACATTTTCACT-TCGAACTTC
* * *
299344 TAAAATTCATATTTTTAACCTCGAACTTCTCAAAAATTAAAATTTTCACTTCGAACTTCC
1 -AAAATT-ACATTTTTACCCTCGAACTTCTCAAAAATT-ACATTTTCACTTCGAACTT-C
* * *
299404 AAATTTACATTTTTACCC-CTAAACTTCTTAAAAATTACATTTT
1 AAAATTACATTTTTACCCTC-GAACTTCTCAAAAATTACATTTT
299447 ACCCCAAACT
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
57 7 0.08
58 30 0.35
59 40 0.47
60 9 0.10
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.41
Consensus pattern (56 bp):
AAAATTACATTTTTACCCTCGAACTTCTCAAAAATTACATTTTCACTTCGAACTTC
Found at i:299429 original size:28 final size:28
Alignment explanation
Indices: 299397--299543 Score: 104
Period size: 29 Copynumber: 5.1 Consensus size: 28
299387 TTTCACTTCG
*
299397 AACTTCCAAATTTACATTTTTACCCCTA
1 AACTTCCAAAATTACATTTTTACCCCTA
*
299425 AACTTCTTAAAAATTACA-TTTTACCCC-A
1 AACTTC--CAAAATTACATTTTTACCCCTA
* * * * * *
299453 AACTTTCAAAAATCACGTTTTTATCCTTG
1 AAC-TTCCAAAATTACATTTTTACCCCTA
* *
299482 AATTTCCAAAAATGACATTTTTACCTCCTAA
1 AACTTCC-AAAATTACATTTTTACC-CCT-A
*
299513 AACTTTCC-AAATTACATTTTAACCCC-A
1 AAC-TTCCAAAATTACATTTTTACCCCTA
299540 AACT
1 AACT
299544 CTCTGAAACT
Statistics
Matches: 93, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
26 1 0.01
27 12 0.13
28 20 0.22
29 30 0.32
30 24 0.26
31 2 0.02
32 4 0.04
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (28 bp):
AACTTCCAAAATTACATTTTTACCCCTA
Found at i:299692 original size:16 final size:15
Alignment explanation
Indices: 299642--299694 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 15
299632 TTGATTCATG
299642 ATTCGTAT-TTTATT
1 ATTCGTATATTTATT
* * *
299656 TTTCTTATATCTATT
1 ATTCGTATATTTATT
299671 -TTCGTATATTTATT
1 ATTCGTATATTTATT
299685 CATTCGTATA
1 -ATTCGTATA
299695 ATTGTTCGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
14 18 0.58
15 5 0.16
16 8 0.26
ACGTcount: A:0.23, C:0.11, G:0.06, T:0.60
Consensus pattern (15 bp):
ATTCGTATATTTATT
Found at i:300673 original size:24 final size:24
Alignment explanation
Indices: 300646--300696 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
300636 AGTTTGGAAC
* *
300646 TTTGGATTGAGTTTGGATTATGTG
1 TTTGGATTGAATTTGCATTATGTG
*
300670 TTTGGATTGAATTTGCATTATTTG
1 TTTGGATTGAATTTGCATTATGTG
300694 TTT
1 TTT
300697 TTATGTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.02, G:0.25, T:0.55
Consensus pattern (24 bp):
TTTGGATTGAATTTGCATTATGTG
Found at i:301668 original size:272 final size:272
Alignment explanation
Indices: 301183--301725 Score: 1016
Period size: 272 Copynumber: 2.0 Consensus size: 272
301173 TGAAACCAAT
*
301183 TATATGAAAAGAATGTGTTTATAAGGACTAAATTAAAATATGAGTTTGAATGTATGTGAAGTCTC
1 TATATGAAAAGAATGTGTTTATAAGGACTAAATTAAAATATGAGTTTGAATGTATGTGAAGCCTC
301248 TTTCAGTGTCATTATGTGGAATTAGAAAAGGATTGTCTAATATGCTTCAAAACTTTAAGTTCTAT
66 TTTCAGTGTCATTATGTGGAATTAGAAAAGGATTGTCTAATATGCTTCAAAACTTTAAGTTCTAT
*
301313 AACTCTGAATATGCCTCTGTTTGAATATTAAGAATGTGATTGGTCTCAATTAATATACGTTATTT
131 AACTCTGAATATGCCTCTGTTTGAATATTAAGAATGTGATTGATCTCAATTAATATACGTTATTT
301378 ATGGATAAAATGTGCTTGGTAGATTTAGTAAAATGCTTAGGATATGATTGGCATGCCAATA-GGG
196 ATGGATAAAATGTGCTTGGTAGATTTAGTAAAATGCTTAGGATATGATTGGCATGCCAATAGGGG
301442 TTAGATGCCCAC
261 TTAGATGCCCAC
301454 TATATGAAAAGAATGTGTTTATAAGGACTAAATTAAAATATGAGTTTGAATGTATGTGAAGCCTC
1 TATATGAAAAGAATGTGTTTATAAGGACTAAATTAAAATATGAGTTTGAATGTATGTGAAGCCTC
301519 TTTCAGTGTCATTATGTGGAATTAGACAAAGGATTGTCTAATATGCTTCAAAACTTTAAGTTCTA
66 TTTCAGTGTCATTATGTGGAATTAGA-AAAGGATTGTCTAATATGCTTCAAAACTTTAAGTTCTA
* * *
301584 TAACTTTGAATATGCCTCTGTTTGAATATTGAGAATGTGATTGATCTTAATTAATATACGTTATT
130 TAACTCTGAATATGCCTCTGTTTGAATATTAAGAATGTGATTGATCTCAATTAATATACGTTATT
*
301649 TATGGATAAAATGTGCTTGGTAGATTTAGTGAAATGCTTAGGATATGATTGGCATGCCAATAGGG
195 TATGGATAAAATGTGCTTGGTAGATTTAGTAAAATGCTTAGGATATGATTGGCATGCCAATAGGG
301714 GTTAGATGCCCA
260 GTTAGATGCCCA
301726 TTATGTTTGG
Statistics
Matches: 264, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
271 90 0.34
272 160 0.61
273 14 0.05
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (272 bp):
TATATGAAAAGAATGTGTTTATAAGGACTAAATTAAAATATGAGTTTGAATGTATGTGAAGCCTC
TTTCAGTGTCATTATGTGGAATTAGAAAAGGATTGTCTAATATGCTTCAAAACTTTAAGTTCTAT
AACTCTGAATATGCCTCTGTTTGAATATTAAGAATGTGATTGATCTCAATTAATATACGTTATTT
ATGGATAAAATGTGCTTGGTAGATTTAGTAAAATGCTTAGGATATGATTGGCATGCCAATAGGGG
TTAGATGCCCAC
Found at i:302675 original size:21 final size:21
Alignment explanation
Indices: 302651--302708 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
302641 TAGTACAGAT
*
302651 TTCTACCTATACAAGTGACAG
1 TTCTACCTATACAAGTGACAC
*
302672 TTCTACCTATACAAGTGACTC
1 TTCTACCTATACAAGTGACAC
* *
302693 TTCTACCGAAACAAGT
1 TTCTACCTATACAAGT
302709 CTTACTTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (21 bp):
TTCTACCTATACAAGTGACAC
Found at i:303438 original size:37 final size:37
Alignment explanation
Indices: 303388--303463 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
303378 TCCTTGCGAT
*
303388 CCAATATTGCTCTTACGAGCTAGAATTACTCAACGAG
1 CCAATATTGCTCTTACGAGCCAGAATTACTCAACGAG
* *
303425 CCAATATTGCTCTTACGAGCCAGTATTTCTCAACGAG
1 CCAATATTGCTCTTACGAGCCAGAATTACTCAACGAG
303462 CC
1 CC
303464 CGTATGCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (37 bp):
CCAATATTGCTCTTACGAGCCAGAATTACTCAACGAG
Found at i:303444 original size:19 final size:19
Alignment explanation
Indices: 303388--303451 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
303378 TCCTTGCGAT
303388 CCAATATTGCTCTTACGAG
1 CCAATATTGCTCTTACGAG
* * *
303407 CTAGA-ATTACTC-AACGAG
1 CCA-ATATTGCTCTTACGAG
303425 CCAATATTGCTCTTACGAG
1 CCAATATTGCTCTTACGAG
*
303444 CCAGTATT
1 CCAATATT
303452 TCTCAACGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
17 1 0.03
18 13 0.37
19 20 0.57
20 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (19 bp):
CCAATATTGCTCTTACGAG
Found at i:303462 original size:18 final size:18
Alignment explanation
Indices: 303402--303468 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
303392 TATTGCTCTT
* *
303402 ACGAGCTAGAATTACTCA
1 ACGAGCCAGTATTACTCA
* * *
303420 ACGAGCCAATATTGCTCTT
1 ACGAGCCAGTATTACTC-A
*
303439 ACGAGCCAGTATTTCTCA
1 ACGAGCCAGTATTACTCA
*
303457 ACGAGCCCGTAT
1 ACGAGCCAGTAT
303469 GCTATTCCCT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 24 0.62
19 15 0.38
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (18 bp):
ACGAGCCAGTATTACTCA
Found at i:311695 original size:21 final size:22
Alignment explanation
Indices: 311669--311710 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
311659 AATAAAAAAT
311669 AAAAGAAAAATGAGT-AGAAAC
1 AAAAGAAAAATGAGTAAGAAAC
**
311690 AAAAGAATCATGAGTAAGAAA
1 AAAAGAAAAATGAGTAAGAAA
311711 ACGTGTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.64, C:0.05, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAATGAGTAAGAAAC
Found at i:313522 original size:17 final size:17
Alignment explanation
Indices: 313497--313536 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
313487 AACTCAATCT
*
313497 TTTTCTTTTAT-TTATTA
1 TTTTATTTTATCTT-TTA
313514 TTTTATTTTATCTTTTA
1 TTTTATTTTATCTTTTA
313531 TTTTAT
1 TTTTAT
313537 GCCTTCTACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTATCTTTTA
Found at i:313529 original size:12 final size:12
Alignment explanation
Indices: 313496--313536 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
313486 CAACTCAATC
313496 TTTT-TCTTTTA
1 TTTTATCTTTTA
*
313507 -TTTATTATTTTA
1 TTTTA-TCTTTTA
313519 TTTTATCTTTTA
1 TTTTATCTTTTA
313531 TTTTAT
1 TTTTAT
313537 GCCTTCTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
10 3 0.12
12 18 0.72
13 4 0.16
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTATCTTTTA
Found at i:321958 original size:27 final size:27
Alignment explanation
Indices: 321918--321999 Score: 87
Period size: 30 Copynumber: 2.9 Consensus size: 27
321908 CCGTTGAAAG
*
321918 GAGTTT-AATTTTTTTTCTATTTTT-AA
1 GAGTTTAAATTTTTTTT-AATTTTTAAA
321944 GAGGTTTAAATTTTTTTTAATTTTTAAA
1 GA-GTTTAAATTTTTTTTAATTTTTAAA
*
321972 GAGTTTAAAAAGTTTTTTTAAATTTTTA
1 GAGTTT--AAA-TTTTTTTTAATTTTTA
322000 GGGATCCAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.04
27 14 0.29
28 14 0.29
29 3 0.06
30 15 0.31
ACGTcount: A:0.30, C:0.01, G:0.10, T:0.59
Consensus pattern (27 bp):
GAGTTTAAATTTTTTTTAATTTTTAAA
Found at i:321968 original size:28 final size:27
Alignment explanation
Indices: 321918--321999 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 27
321908 CCGTTGAAAG
*
321918 GAGTTT-AATTTTTTTT-CTATTTTTAA
1 GAGTTTAAATTTTTTTTAAT-TTTTTAA
*
321944 GAGGTTTAAATTTTTTTTAATTTTTAAA
1 GA-GTTTAAATTTTTTTTAATTTTTTAA
* *
321972 GAGTTTAAAAAGTTTTTTTAAATTTTTA
1 GAGTTT--AAATTTTTTTTAATTTTTTA
322000 GGGATCCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.04
27 8 0.17
28 18 0.39
29 18 0.39
ACGTcount: A:0.30, C:0.01, G:0.10, T:0.59
Consensus pattern (27 bp):
GAGTTTAAATTTTTTTTAATTTTTTAA
Found at i:323573 original size:21 final size:22
Alignment explanation
Indices: 323526--323574 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
323516 ATTTCGCATC
323526 TAATTTTTTTACTTTAAATGTT
1 TAATTTTTTTACTTTAAATGTT
* * * *
323548 AAATTTTTTT-TTTTATATTTT
1 TAATTTTTTTACTTTAAATGTT
323569 TAATTT
1 TAATTT
323575 AAATATCTCA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (22 bp):
TAATTTTTTTACTTTAAATGTT
Found at i:328917 original size:52 final size:52
Alignment explanation
Indices: 328835--329126 Score: 360
Period size: 52 Copynumber: 5.6 Consensus size: 52
328825 TAAATGAAAA
*
328835 AGGTCTGATGACTATGTGTCATCGTAAGTATATGAATCCTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
328887 AGGTCTAATGACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
328939 AGGTTTGTTAAC--TGTGTCATCGTGAGTATATGAATCCTTTTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCC---TTTACGGATTATG
* * **
328992 AGGTCCGATGATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAA
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
329044 AGGTCTGATGACTATGTGTCATCATGAGCATAT-AGATCCTTTTACGGATT-TA
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATGA-ATCC-TTTACGGATTATG
* *
329096 AGGT-TCGATGATTTTGTGTCATCGTGAGTAT
1 AGGTCT-GATGACTATGTGTCATCGTGAGTAT
329127 TAAATGGGAA
Statistics
Matches: 208, Mismatches: 24, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
50 24 0.12
51 2 0.01
52 127 0.61
53 30 0.14
55 25 0.12
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (52 bp):
AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:329030 original size:105 final size:104
Alignment explanation
Indices: 328832--329131 Score: 376
Period size: 105 Copynumber: 2.9 Consensus size: 104
328822 CCGTAAATGA
* * **
328832 AAAAGGTCTGATGACTATGTGTCATCGTAAGTATATGAATCC-TTTACGGATTATGAGGTCTAAT
1 AAAAGGTCTGATAAC-ATGTGTCATCGTGAGTATATGAATCCTTTTACGGATTATGAGGTCCGAT
*
328896 GACTATGTGTCATCGTGAGTATATAAATCCTTTACGGATT
65 GATTATGTGTCATCGTGAGTATATAAATCCTTTACGGATT
** * *
328936 ATGAGGTTTGTTAAC-TGTGTCATCGTGAGTATATGAATCCTTTTTTACGGATTATGAGGTCCGA
1 AAAAGGTCTGATAACATGTGTCATCGTGAGTATATGAATCC--TTTTACGGATTATGAGGTCCGA
*
329000 TGATTATGTGTCATCGTGAGTATATGAATCCTTTACGGATT
64 TGATTATGTGTCATCGTGAGTATATAAATCCTTTACGGATT
* * * * *
329041 AAAAGGTCTGATGACTATGTGTCATCATGAGCATAT-AGATCCTTTTACGGATT-TAAGGTTCGA
1 AAAAGGTCTGATAAC-ATGTGTCATCGTGAGTATATGA-ATCCTTTTACGGATTATGAGGTCCGA
*
329104 TGATTTTGTGTCATCGTGAGTAT-TAAAT
64 TGATTATGTGTCATCGTGAGTATATAAAT
329132 GGGAAATGAG
Statistics
Matches: 169, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
102 24 0.14
103 4 0.02
104 40 0.24
105 79 0.47
106 1 0.01
107 21 0.12
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (104 bp):
AAAAGGTCTGATAACATGTGTCATCGTGAGTATATGAATCCTTTTACGGATTATGAGGTCCGATG
ATTATGTGTCATCGTGAGTATATAAATCCTTTACGGATT
Found at i:336382 original size:2 final size:2
Alignment explanation
Indices: 336370--336399 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
336360 ATCAAATGTC
336370 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
336400 TAAAACTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:337638 original size:3 final size:3
Alignment explanation
Indices: 337630--337654 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
337620 AAATTTATCC
337630 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
337655 TTAAACTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:337818 original size:2 final size:2
Alignment explanation
Indices: 337813--337841 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
337803 TTGTATTTTA
337813 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
337842 CATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:338558 original size:4 final size:4
Alignment explanation
Indices: 338549--338576 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
338539 GTTATTGAAT
338549 TGCC TGCC TGCC TGCC TGCC TGCC TGCC
1 TGCC TGCC TGCC TGCC TGCC TGCC TGCC
338577 GTGTACTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.25, T:0.25
Consensus pattern (4 bp):
TGCC
Found at i:338624 original size:3 final size:3
Alignment explanation
Indices: 338616--338644 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
338606 CTTTACAATT
338616 GCA GCA GCA GCA GCA GCA GCA GCA GCA GC
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GC
338645 CTTCTCATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.34, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:345672 original size:5 final size:5
Alignment explanation
Indices: 345664--345689 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
345654 AGCAGCCCCG
345664 CCTTC CCTTC CCTTC CCTTC CCTTC C
1 CCTTC CCTTC CCTTC CCTTC CCTTC C
345690 ATATTTAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (5 bp):
CCTTC
Found at i:346350 original size:21 final size:22
Alignment explanation
Indices: 346320--346360 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
346310 TTAGTATAAA
346320 TATTAATATA-ATTTTTAAATT
1 TATTAATATATATTTTTAAATT
*
346341 TATTATTATATATTTTTAAA
1 TATTAATATATATTTTTAAA
346361 ATATTTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTAATATATATTTTTAAATT
Found at i:346365 original size:21 final size:20
Alignment explanation
Indices: 346317--346365 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
346307 TTTTTAGTAT
346317 AAATATTAATATAATTTTTA
1 AAATATTAATATAATTTTTA
* *
346337 AATTTATTATTATATATTTTTA
1 AA-ATATTAATATA-ATTTTTA
346359 AAATATT
1 AAATATT
346366 TATGCATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 13 0.54
22 9 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATATTAATATAATTTTTA
Found at i:350002 original size:30 final size:31
Alignment explanation
Indices: 349963--350103 Score: 105
Period size: 30 Copynumber: 4.7 Consensus size: 31
349953 AAAAATGAAA
*
349963 TTTTAGAAAGTTTGAGGGTTAAATTCA-AAT
1 TTTTGGAAAGTTTGAGGGTTAAATTCATAAT
*
349993 TTTTGGAAAGTTTGA-GGTTAAA-ACATAA-
1 TTTTGGAAAGTTTGAGGGTTAAATTCATAAT
* ** * * * *
350021 TTTTAGAAAACTCGGGGGTCAAATCCA-AAT
1 TTTTGGAAAGTTTGAGGGTTAAATTCATAAT
* * * *
350051 TTTTGGACAGTTTAAGGGTCAAAAT-ATAAT
1 TTTTGGAAAGTTTGAGGGTTAAATTCATAAT
* *
350081 TTTTGGATAGTTTGGGGGTTAAA
1 TTTTGGAAAGTTTGAGGGTTAAA
350104 ACACAATTTC
Statistics
Matches: 84, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
28 12 0.14
29 18 0.21
30 54 0.64
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (31 bp):
TTTTGGAAAGTTTGAGGGTTAAATTCATAAT
Found at i:352107 original size:46 final size:46
Alignment explanation
Indices: 352054--352196 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 46
352044 TCATGATTGT
*
352054 GGTAAGAGATT-GAATAATGTCTTCAATCTAT-CCATCTTGACTTAAA
1 GGTAAGAGATTAG-ATAATGTCTTCAATAT-TCCCATCTTGACTTAAA
* *
352100 GGTAAGAGATTAGATAATGTCTTCAATATTCCCCTCTTGACTTAAG
1 GGTAAGAGATTAGATAATGTCTTCAATATTCCCATCTTGACTTAAA
* ** * * * * * *
352146 GGTAAAAGATTAGACGATGGCTTCAATCTGCCCCTCTTGACTGAAG
1 GGTAAGAGATTAGATAATGTCTTCAATATTCCCATCTTGACTTAAA
352192 GGTAA
1 GGTAA
352197 AAGACTGAGT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
45 1 0.01
46 83 0.98
47 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (46 bp):
GGTAAGAGATTAGATAATGTCTTCAATATTCCCATCTTGACTTAAA
Found at i:352197 original size:46 final size:46
Alignment explanation
Indices: 352069--352200 Score: 156
Period size: 46 Copynumber: 2.9 Consensus size: 46
352059 GAGATTGAAT
* * * * * *
352069 AATGTCTTCAATCTATCCATCTTGACTTAAAGGTAAGAGATTAGAT
1 AATGGCTTCAATCTACCCCTCTTGACTTAAGGGTAAAAGATTAGAC
* * *
352115 AATGTCTTCAATATTCCCCTCTTGACTTAAGGGTAAAAGATTAGAC
1 AATGGCTTCAATCTACCCCTCTTGACTTAAGGGTAAAAGATTAGAC
* * *
352161 GATGGCTTCAATCTGCCCCTCTTGACTGAAGGGTAAAAGA
1 AATGGCTTCAATCTACCCCTCTTGACTTAAGGGTAAAAGA
352201 CTGAGTGATG
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (46 bp):
AATGGCTTCAATCTACCCCTCTTGACTTAAGGGTAAAAGATTAGAC
Found at i:352864 original size:243 final size:229
Alignment explanation
Indices: 352272--353010 Score: 759
Period size: 243 Copynumber: 3.1 Consensus size: 229
352262 CTTATTTGAC
* * * * * ** * *
352272 CCACTTCTCTATATCTTATTAGGAAGATGAGGTTTGAAGTTTCACTCACATTGAGCACCGTTTCG
1 CCACTTCTCTGTATCTCATCAGGAAGATG-GGCTTGAAGTTTCACTTACATTGAGCTTCGCTTCA
* * * * * *
352337 TTGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGATCGCTTCATTGTTTTAATCCACTTC
65 TAGTTTTGGTCAACTTCTCTGTATCTCATCAAGAAGATGA-C-C-GC-TTG-----ATCCACTTC
* * *
352402 TCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTC-ACATTGAGCTTCGCTTTATTGTT
121 TCTATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCAAAAATGAGCTTCGCTTTATTGTT
* *
352466 TTGGTCCACTTTTCTGTATCTCATCAGGAAAATGACCACTTGAT
186 TTGGTCCACTTCTCTGTATCTCATCAGGAAAATGACCACTTAAT
* *
352510 CCACTTCTCTGTATCTCATCAGGAAGATGGGTTTGAAGTTTCACTTACATTGAGCTTCGTTTCAT
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGCTTGAAGTTTCACTTACATTGAGCTTCGCTTCAT
* * * *
352575 TGTTTTGGTCAACTTCTTTGTATCTCATCAAGAAGATGATCGCTTGATCCACTTCTCTACATCTC
66 AGTTTTGGTCAACTTCTCTGTATCTCATCAAGAAGATGACCGCTTGATCCACTTCTCTATATCTC
* * * **
352640 ATCAGGAAGATGAGGGTTTGAAGTTTCACTCAAAAAAAATGAGCTTCGTTTTGTTGTTTTGGTTT
131 ATCAGGAAGATGGGGGTTTGAAGTTTCACTC---AAAAATGAGCTTCGCTTTATTGTTTTGGTCC
* *
352705 ACTTCTCTGTATCTCATTAGGAAGATGATCGCTTTATCATTTTAAT
193 ACTTCTCTGTATCTCATCAGGAAAATGA-C-C---A-C---TTAAT
* * *
352751 CCACTTCTTTGTATCTCATCAGGAAGATAGGGGCTTGAAGTTTTA-TTGACATTGAGCTTTGCTT
1 CCACTTCTCTGTATCTCATCAGGAAGAT--GGGCTTGAAGTTTCACTT-ACATTGAGCTTCGCTT
*
352815 CATAGTTTTGGTCCAA-TTCTCTGTATCTCATCAGGAAGATGACCGCTTGATCCACTTCTCTATA
63 CATAGTTTTGGT-CAACTTCTCTGTATCTCATCAAGAAGATGACCGCTTGATCCACTTCTCTATA
* * * * *
352879 TCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTC-ACATTGAGCTTCACTTCATTATTTTGGTC
127 TCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCAAAAATGAGCTTCGCTTTATTGTTTTGGTC
* * * * *
352943 CACTTCTCTGTATCTTATTAAGAAGATGACCACTTGAT
192 CACTTCTCTGTATCTCATCAGGAAAATGACCACTTAAT
* **
352981 CCACTTCTTTG-ATCTCATCAAAAAGATGGG
1 CCACTTCTCTGTATCTCATCAGGAAGATGGG
353011 GATTTGCTCA
Statistics
Matches: 432, Mismatches: 52, Indels: 45
0.82 0.10 0.09
Matches are distributed among these distances:
227 3 0.01
228 47 0.11
229 14 0.03
230 15 0.03
232 49 0.11
233 5 0.01
234 3 0.01
235 1 0.00
237 68 0.16
238 28 0.06
239 47 0.11
241 31 0.07
242 2 0.00
243 116 0.27
244 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (229 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGGGCTTGAAGTTTCACTTACATTGAGCTTCGCTTCAT
AGTTTTGGTCAACTTCTCTGTATCTCATCAAGAAGATGACCGCTTGATCCACTTCTCTATATCTC
ATCAGGAAGATGGGGGTTTGAAGTTTCACTCAAAAATGAGCTTCGCTTTATTGTTTTGGTCCACT
TCTCTGTATCTCATCAGGAAAATGACCACTTAAT
Found at i:352951 original size:115 final size:115
Alignment explanation
Indices: 352393--353016 Score: 732
Period size: 115 Copynumber: 5.3 Consensus size: 115
352383 CATTGTTTTA
352393 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
* * *
352458 TTATTGTTTTGGTCCACTTTTCTGTATCTCATCAGGAAAATGACCACTTG
66 TCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTG
* *
352508 ATCCACTTCTCTGTATCTCATCAGGAAGAT--GGGTTTGAAGTTTCACTTACATTGAGCTTCGTT
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
* * * * *
352571 TCATTGTTTTGGTCAACTTCTTTGTATCTCATCAAGAAGATGATCGCTTG
66 TCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTG
** * * *
352621 ATCCACTTCTCTACATCTCATCAGGAAGATGAGGGTTTGAAGTTTCACTCAAAAAAAATGAGCTT
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTC----ACATTGAGCTT
* ** ** * *
352686 CGTTTTGTTGTTTTGGTTTACTTCTCTGTATCTCATTAGGAAGATGATCGCTTTATCATTTTA
62 CGCTTCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGA-C-C---A-C---TTG
* * * * * * *
352749 ATCCACTTCTTTGTATCTCATCAGGAAGATAGGGGCTTGAAGTTTTATTGACATTGAGCTTTGCT
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
* * *
352814 TCATAGTTTTGGTCCAATTCTCTGTATCTCATCAGGAAGATGACCGCTTG
66 TCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTG
* *
352864 ATCCACTTCTCTATATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACT
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
* * * *
352929 TCATTATTTTGGTCCACTTCTCTGTATCTTATTAAGAAGATGACCACTTG
66 TCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTG
* ** *
352979 ATCCACTTCTTTG-ATCTCATCAAAAAGATGGGGATTTG
1 ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTG
353017 CTCACACGGA
Statistics
Matches: 426, Mismatches: 68, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
113 101 0.24
114 22 0.05
115 159 0.37
118 1 0.00
119 49 0.12
121 1 0.00
122 1 0.00
123 1 0.00
124 47 0.11
125 1 0.00
128 43 0.10
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (115 bp):
ATCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCT
TCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCACTTG
Found at i:364903 original size:30 final size:30
Alignment explanation
Indices: 364863--364932 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
364853 AAAAACAAAA
* * *
364863 TTTTGAAAAGTTTGAGCGCCAAATTTGAAT
1 TTTTGGAAAGTTTAAGCGCCAAATCTGAAT
* *
364893 TTTTGGAAAGTTTAAGGGTCAAATCTGAAT
1 TTTTGGAAAGTTTAAGCGCCAAATCTGAAT
364923 TGTTTGGAAA
1 T-TTTGGAAA
364933 ATTCGAGGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 26 0.76
31 8 0.24
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTTGGAAAGTTTAAGCGCCAAATCTGAAT
Found at i:364961 original size:30 final size:30
Alignment explanation
Indices: 364890--365044 Score: 120
Period size: 30 Copynumber: 5.2 Consensus size: 30
364880 GCCAAATTTG
* ** *
364890 AATTTTTGGAAAGTTTAAGGGTCAAATC-T
1 AATTTTTGGAAAATTCGAGGGTCAAAACAT
*
364919 GAATTGTTTGGAAAATTCGAGGGTTAAAACAT
1 -AATT-TTTGGAAAATTCGAGGGTCAAAACAT
* *
364951 AATTTTTGG-AAGTTCGAGGGTCAAATCCA-
1 AATTTTTGGAAAATTCGAGGGTCAAA-ACAT
* *
364980 AATTTTTGGACAATT-TAGGGGTCAAAACAT
1 AATTTTTGGAAAATTCGA-GGGTCAAAACAT
* * * * *
365010 AATTTTTGGATAGTTTGGGGGTCAAAACAC
1 AATTTTTGGAAAATTCGAGGGTCAAAACAT
365040 AATTT
1 AATTT
365045 CTAAATAAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
29 26 0.26
30 51 0.50
31 23 0.23
32 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (30 bp):
AATTTTTGGAAAATTCGAGGGTCAAAACAT
Found at i:365012 original size:59 final size:60
Alignment explanation
Indices: 364890--365035 Score: 179
Period size: 60 Copynumber: 2.4 Consensus size: 60
364880 GCCAAATTTG
* ** * *
364890 AATTTTTGGAAAGTTTAAGGGTCAAATCTGAATTGTTTGGAAAATTCGAGGGTTAAAACAT
1 AATTTTTGG-AAGTTTGAGGGTCAAATCCAAATTGTTTGGAAAATTAGAGGGTCAAAACAT
* *
364951 AATTTTTGGAAGTTCGAGGGTCAAATCCAAATT-TTTGGACAATTTAG-GGGTCAAAACAT
1 AATTTTTGGAAGTTTGAGGGTCAAATCCAAATTGTTTGGA-AAATTAGAGGGTCAAAACAT
*
365010 AATTTTTGGATAGTTTGGGGGTCAAA
1 AATTTTTGGA-AGTTTGAGGGTCAAA
365036 ACACAATTTC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 27 0.36
60 38 0.51
61 9 0.12
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (60 bp):
AATTTTTGGAAGTTTGAGGGTCAAATCCAAATTGTTTGGAAAATTAGAGGGTCAAAACAT
Found at i:366238 original size:16 final size:16
Alignment explanation
Indices: 366217--366269 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
366207 GGCTTGTTGG
*
366217 GTAATTAGGCTTAGGT
1 GTAATTGGGCTTAGGT
* *
366233 GTAATTGGGTTTGGGT
1 GTAATTGGGCTTAGGT
* *
366249 TTAATTGGGCTTTGG-
1 GTAATTGGGCTTAGGT
366264 GTAATT
1 GTAATT
366270 TAGGGTTTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 5 0.17
16 25 0.83
ACGTcount: A:0.19, C:0.04, G:0.34, T:0.43
Consensus pattern (16 bp):
GTAATTGGGCTTAGGT
Found at i:366264 original size:17 final size:16
Alignment explanation
Indices: 366234--366265 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
366224 GGCTTAGGTG
366234 TAATTGGGTTTGGGTT
1 TAATTGGGTTTGGGTT
366250 TAATTGGGCTTTGGGT
1 TAATTGGG-TTTGGGT
366266 AATTTAGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.12, C:0.03, G:0.38, T:0.47
Consensus pattern (16 bp):
TAATTGGGTTTGGGTT
Found at i:373797 original size:19 final size:17
Alignment explanation
Indices: 373775--373815 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
373765 TCCACTTCAA
*
373775 TTTAATTTTTCTACTTATT
1 TTTAATTTTT-TAATT-TT
373794 TTTAATTTTTTAATTTT
1 TTTAATTTTTTAATTTT
373811 TTTAA
1 TTTAA
373816 AACCAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 4 0.19
19 10 0.48
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAATTTTTTAATTTT
Found at i:384286 original size:21 final size:22
Alignment explanation
Indices: 384260--384300 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
384250 AATGTATATA
*
384260 ATATTTTT-TAATTTAATTTTT
1 ATATTTTTATAATTAAATTTTT
384281 ATATTTTTATAATTAAATTT
1 ATATTTTTATAATTAAATTT
384301 AGACCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
ATATTTTTATAATTAAATTTTT
Found at i:384406 original size:19 final size:19
Alignment explanation
Indices: 384382--384421 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
384372 CATTTACCCT
384382 AAACTCATTCTTCACTCTC
1 AAACTCATTCTTCACTCTC
384401 AAACTCATTCTTCACTCTC
1 AAACTCATTCTTCACTCTC
384420 AA
1 AA
384422 TTCTTTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (19 bp):
AAACTCATTCTTCACTCTC
Found at i:385933 original size:20 final size:20
Alignment explanation
Indices: 385908--385947 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
385898 TATAAGTGTA
385908 CATAGACAAAAATACTACAC
1 CATAGACAAAAATACTACAC
385928 CATAGACAAAAATACTACAC
1 CATAGACAAAAATACTACAC
385948 TTAAAATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.15
Consensus pattern (20 bp):
CATAGACAAAAATACTACAC
Found at i:386671 original size:10 final size:10
Alignment explanation
Indices: 386650--386895 Score: 109
Period size: 10 Copynumber: 22.0 Consensus size: 10
386640 TTTAACACAA
386650 CACATATTAAT
1 CACAT-TTAAT
386661 CACATTTAAT
1 CACATTTAAT
*
386671 CACATATAAT
1 CACATTTAAT
386681 CACATTTAAT
1 CACATTTAAT
*
386691 CACA-TTAGT
1 CACATTTAAT
* *
386700 CACATGAATATTT
1 CACAT--TTA-AT
386713 CAGCATTTATCACAT
1 CA-CA-TT-T-A-AT
386728 CACATATTAAT
1 CACAT-TTAAT
*
386739 CACATTTAGT
1 CACATTTAAT
386749 CACATTTAAT
1 CACATTTAAT
*
386759 CACA-TTAGT
1 CACATTTAAT
* *
386768 CACATAAATATTT
1 CACAT--TTA-AT
386781 CAACATTTATCACAT
1 C-ACA-TT-T-A-AT
386796 CACATATTAAT
1 CACAT-TTAAT
*
386807 CACATTTAGT
1 CACATTTAAT
386817 CACATTTAAT
1 CACATTTAAT
* *
386827 CACATGAATATTT
1 CACAT--TTA-AT
386840 CAGCATTTATCACAT
1 CA-CA-TT-T-A-AT
386855 CACATATTAAT
1 CACAT-TTAAT
*
386866 CACATTTAGT
1 CACATTTAAT
386876 CACATTTAAT
1 CACATTTAAT
*
386886 CATATTTAAT
1 CACATTTAAT
386896 GATAGTTTGG
Statistics
Matches: 183, Mismatches: 26, Indels: 53
0.70 0.10 0.20
Matches are distributed among these distances:
9 16 0.09
10 84 0.46
11 26 0.14
12 9 0.05
13 14 0.08
14 20 0.11
15 14 0.08
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (10 bp):
CACATTTAAT
Found at i:386737 original size:78 final size:77
Alignment explanation
Indices: 386604--386831 Score: 269
Period size: 68 Copynumber: 3.1 Consensus size: 77
386594 CAGTCTTTTA
* * * * * * *
386604 CACA-TTAATCGCATTAATCACATGAGTACTTAAACATTTAACACAACACATATTAATCACATTT
1 CACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTT
386668 AATCACATATAAT
66 AATCACAT-TAAT
*
386681 CACATTTAATCACATTAGTCACATGAATATTTCAGCATTTATCACATCACATATTAATCAC----
1 CACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTT
*
386742 -AT----TTAGT
66 AATCACATTAAT
*
386749 CACATTTAATCACATTAGTCACATAAATATTTCAACATTTATCACATCACATATTAATCACATTT
1 CACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTT
*
386814 AGTCACATTTAAT
66 AATCACA-TTAAT
386827 CACAT
1 CACAT
386832 GAATATTTCA
Statistics
Matches: 127, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
68 62 0.49
69 1 0.01
73 3 0.02
77 4 0.03
78 57 0.45
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (77 bp):
CACATTTAATCACATTAGTCACATGAATATTTCAACATTTATCACATCACATATTAATCACATTT
AATCACATTAAT
Found at i:386740 original size:68 final size:68
Alignment explanation
Indices: 386659--386887 Score: 352
Period size: 68 Copynumber: 3.5 Consensus size: 68
386649 ACACATATTA
* *
386659 ATCACAT-TTAATCACATATAATCACATTTAATCACATTAGTCACATGAATATTTCAGCATTTAT
1 ATCACATATTAATCACATTTAGTCACATTTAATCACATTAGTCACATGAATATTTCAGCATTTAT
386723 CAC
66 CAC
* *
386726 ATCACATATTAATCACATTTAGTCACATTTAATCACATTAGTCACATAAATATTTCAACATTTAT
1 ATCACATATTAATCACATTTAGTCACATTTAATCACATTAGTCACATGAATATTTCAGCATTTAT
386791 CAC
66 CAC
386794 ATCACATATTAATCACATTTAGTCACA-TT--T---A--A-TCACATGAATATTTCAGCATTTAT
1 ATCACATATTAATCACATTTAGTCACATTTAATCACATTAGTCACATGAATATTTCAGCATTTAT
386850 CAC
66 CAC
386853 ATCACATATTAATCACATTTAGTCACATTTAATCA
1 ATCACATATTAATCACATTTAGTCACATTTAATCA
386888 TATTTAATGA
Statistics
Matches: 150, Mismatches: 6, Indels: 15
0.88 0.04 0.09
Matches are distributed among these distances:
59 52 0.35
60 3 0.02
62 2 0.01
65 1 0.01
67 9 0.06
68 83 0.55
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.37
Consensus pattern (68 bp):
ATCACATATTAATCACATTTAGTCACATTTAATCACATTAGTCACATGAATATTTCAGCATTTAT
CAC
Found at i:386847 original size:59 final size:59
Alignment explanation
Indices: 386737--386887 Score: 243
Period size: 59 Copynumber: 2.6 Consensus size: 59
386727 TCACATATTA
* * *
386737 ATCACAT-TTAGTCACATTTAATCACA-TTAGTCACATAAATATTTCAACATTTATCAC
1 ATCACATATTAATCACATTTAGTCACATTTAATCACATAAATATTTCAACATTTATCAC
* *
386794 ATCACATATTAATCACATTTAGTCACATTTAATCACATGAATATTTCAGCATTTATCAC
1 ATCACATATTAATCACATTTAGTCACATTTAATCACATAAATATTTCAACATTTATCAC
386853 ATCACATATTAATCACATTTAGTCACATTTAATCA
1 ATCACATATTAATCACATTTAGTCACATTTAATCA
386888 TATTTAATGA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
57 7 0.08
58 17 0.20
59 63 0.72
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.37
Consensus pattern (59 bp):
ATCACATATTAATCACATTTAGTCACATTTAATCACATAAATATTTCAACATTTATCAC
Found at i:392663 original size:33 final size:31
Alignment explanation
Indices: 392623--392729 Score: 91
Period size: 33 Copynumber: 3.5 Consensus size: 31
392613 CACATATTAA
392623 TCACATTTAATCACATTAGTCACATGAATATT
1 TCACATTT-ATCACATTAGTCACATGAATATT
* * *
392655 TCAGCATTTATCAC----GTCACA-CATTA-A
1 TCA-CATTTATCACATTAGTCACATGAATATT
*
392681 TCACATTTAGTCACATATAATCACATGAATATT
1 TCACATTTA-TCACAT-TAGTCACATGAATATT
392714 TCAACATTTATCACAT
1 TC-ACATTTATCACAT
392730 CACATATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 19
0.69 0.08 0.23
Matches are distributed among these distances:
25 6 0.10
26 7 0.12
27 3 0.05
28 6 0.10
31 5 0.09
32 11 0.19
33 13 0.22
34 7 0.12
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (31 bp):
TCACATTTATCACATTAGTCACATGAATATT
Found at i:392722 original size:59 final size:58
Alignment explanation
Indices: 392567--392765 Score: 256
Period size: 59 Copynumber: 3.4 Consensus size: 58
392557 CATTCTTTTA
* * * * * *
392567 CACA-TTAATCACATTGATCACATGAGTACTTAAACATTTAACACAACACATATTAAT
1 CACATTTAATCACATTAATCACATGAATATTTCAACATTTATCACATCACATATTAAT
* * * *
392624 CACATTTAATCACATTAGTCACATGAATATTTCAGCATTTATCACGTCACACATTAAT
1 CACATTTAATCACATTAATCACATGAATATTTCAACATTTATCACATCACATATTAAT
*
392682 CACATTTAGTCACATATAATCACATGAATATTTCAACATTTATCACATCACATATTAAT
1 CACATTTAATCACAT-TAATCACATGAATATTTCAACATTTATCACATCACATATTAAT
* *
392741 CACTTTTAGTCACATTTAATCACAT
1 CACATTTAATCACA-TTAATCACAT
392766 TTAGTGATAG
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
57 4 0.03
58 57 0.46
59 61 0.50
60 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (58 bp):
CACATTTAATCACATTAATCACATGAATATTTCAACATTTATCACATCACATATTAAT
Found at i:392758 original size:10 final size:10
Alignment explanation
Indices: 392728--392768 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
392718 CATTTATCAC
392728 ATCACATATTA
1 ATCACAT-TTA
*
392739 ATCACTTTTA
1 ATCACATTTA
*
392749 GTCACATTTA
1 ATCACATTTA
392759 ATCACATTTA
1 ATCACATTTA
392769 GTGATAGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 20 0.77
11 6 0.23
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (10 bp):
ATCACATTTA
Found at i:392761 original size:20 final size:21
Alignment explanation
Indices: 392729--392770 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
392719 ATTTATCACA
*
392729 TCACATATTAATCACTTTTAG
1 TCACATATTAATCACATTTAG
392750 TCACAT-TTAATCACATTTAG
1 TCACATATTAATCACATTTAG
392770 T
1 T
392771 GATAGTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (21 bp):
TCACATATTAATCACATTTAG
Found at i:407299 original size:19 final size:19
Alignment explanation
Indices: 407259--407321 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
407249 AATTAAAAAT
407259 AAATTCAAAATAAATTT-T-A
1 AAATTCAAAAT--ATTTATAA
407278 AAATTCAAAATATTTATAA
1 AAATTCAAAATATTTATAA
*
407297 AAATTCCAAA-ATTTATATA
1 AAATTCAAAATATTTATA-A
407316 AAATTC
1 AAATTC
407322 TAAAGAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
17 4 0.10
18 8 0.20
19 28 0.70
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATTCAAAATATTTATAA
Found at i:407308 original size:20 final size:19
Alignment explanation
Indices: 407277--407318 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
407267 AATAAATTTT
407277 AAAATTCAAAATATT-TATA
1 AAAATTCAAAAT-TTATATA
407296 AAAATTCCAAAATTTATATA
1 AAAATT-CAAAATTTATATA
407316 AAA
1 AAA
407319 TTCTAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTCAAAATTTATATA
Found at i:416766 original size:38 final size:36
Alignment explanation
Indices: 416720--416813 Score: 93
Period size: 37 Copynumber: 2.5 Consensus size: 36
416710 TACATATAAT
* *
416720 AAAT-TTAAAAAATATATAATATATCAAATATATTTAA
1 AAATATTAAAAAATATATAA-AAAT-AAATAAATTTAA
*
416757 AAATATTAAAATAA-ACATTAAAAATAAATAAATTTAA
1 AAATATTAAAA-AATATA-TAAAAATAAATAAATTTAA
*
416794 AATATATTAAAAAATTTATA
1 AA-ATATTAAAAAATATATA
416814 TTAGGATAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
37 21 0.45
38 21 0.45
39 5 0.11
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (36 bp):
AAATATTAAAAAATATATAAAAATAAATAAATTTAA
Found at i:416952 original size:12 final size:12
Alignment explanation
Indices: 416935--416968 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
416925 ATAACATTCA
416935 AATAACAAAAAT
1 AATAACAAAAAT
*
416947 AATAACTAAAAT
1 AATAACAAAAAT
*
416959 AATAGCAAAA
1 AATAACAAAA
416969 TAACATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.18
Consensus pattern (12 bp):
AATAACAAAAAT
Found at i:417667 original size:21 final size:21
Alignment explanation
Indices: 417641--417721 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
417631 TTGGTGCTAT
417641 TTTTTTTTACTGTTTTGGTTG
1 TTTTTTTTACTGTTTTGGTTG
**
417662 TTTTTTTTGTTGTTTTTGTGTT-
1 TTTTTTTTACTG-TTTTG-GTTG
* *
417684 TTTTTTTTAATATTTT-G-TG
1 TTTTTTTTACTGTTTTGGTTG
*
417703 -TTTTTTTACTGTTTGGGTT
1 TTTTTTTTACTGTTTTGGTT
417722 ATTGTTTTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
18 13 0.28
19 2 0.04
20 1 0.02
21 14 0.30
22 14 0.30
23 3 0.06
ACGTcount: A:0.06, C:0.02, G:0.17, T:0.74
Consensus pattern (21 bp):
TTTTTTTTACTGTTTTGGTTG
Found at i:417668 original size:12 final size:11
Alignment explanation
Indices: 417653--417820 Score: 60
Period size: 12 Copynumber: 15.2 Consensus size: 11
417643 TTTTTTACTG
*
417653 TTTTGGTTG-T
1 TTTTTGTTGTT
417663 TTTTT-TTGTT
1 TTTTTGTTGTT
417673 GTTTTTG-TGTT
1 -TTTTTGTTGTT
* **
417684 TTTTTTTTAAT
1 TTTTTGTTGTT
*
417695 ATTTTG-TGTT
1 TTTTTGTTGTT
**
417705 TTTTTACTGTT
1 TTTTTGTTGTT
** *
417716 TGGGTTATTGTT
1 T-TTTTGTTGTT
**
417728 TTCATGTTG-T
1 TTTTTGTTGTT
*
417738 -TTTTGTTGTCA
1 TTTTTGTTGT-T
*
417749 TTTTTGTTGCTG
1 TTTTTGTTG-TT
417761 TTTTTGTTGTT
1 TTTTTGTTGTT
417772 ATTTTTGTTGCTT
1 -TTTTTGTTG-TT
**
417785 TTAATGTTGTT
1 TTTTTGTTGTT
* *
417796 TTGTTGTTATT
1 TTTTTGTTGTT
*
417807 TTTGTTGCTGTT
1 TTT-TTGTTGTT
417819 TT
1 TT
417821 GATTGTTATT
Statistics
Matches: 115, Mismatches: 30, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
9 9 0.08
10 17 0.15
11 37 0.32
12 49 0.43
13 3 0.03
ACGTcount: A:0.07, C:0.04, G:0.19, T:0.71
Consensus pattern (11 bp):
TTTTTGTTGTT
Found at i:417689 original size:24 final size:23
Alignment explanation
Indices: 417623--417691 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
417613 AAAAATTATA
* *
417623 TTGTTGTTTTGGTGCTATTTTTTT
1 TTGTTGTTTTTGTG-TTTTTTTTT
** *
417647 TTACTG-TTTTG-GTTGTTTTTT
1 TTGTTGTTTTTGTGTTTTTTTTT
417668 TTGTTGTTTTTGTGTTTTTTTTT
1 TTGTTGTTTTTGTGTTTTTTTTT
417691 T
1 T
417692 AATATTTTGT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
21 11 0.31
22 6 0.17
23 14 0.40
24 4 0.11
ACGTcount: A:0.03, C:0.03, G:0.19, T:0.75
Consensus pattern (23 bp):
TTGTTGTTTTTGTGTTTTTTTTT
Found at i:417691 original size:22 final size:22
Alignment explanation
Indices: 417626--417709 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 22
417616 AATTATATTG
*
417626 TTGTTTTGGTGCTATTTTTTTTTA
1 TTGTTTTTGTG-T-TTTTTTTTTA
* *
417650 CTG-TTTTG-GTTGTTTTTTTTG
1 TTGTTTTTGTGTT-TTTTTTTTA
417671 TTGTTTTTGTGTTTTTTTTTTA
1 TTGTTTTTGTGTTTTTTTTTTA
* *
417693 AT-ATTTTGTGTTTTTTT
1 TTGTTTTTGTGTTTTTTT
417710 ACTGTTTGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
20 1 0.02
21 25 0.50
22 15 0.30
23 7 0.14
24 2 0.04
ACGTcount: A:0.06, C:0.02, G:0.17, T:0.75
Consensus pattern (22 bp):
TTGTTTTTGTGTTTTTTTTTTA
Found at i:417762 original size:24 final size:24
Alignment explanation
Indices: 417735--417783 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
417725 GTTTTCATGT
417735 TGTTTTTGTTGTCATTTTTGTTGC
1 TGTTTTTGTTGTCATTTTTGTTGC
*
417759 TGTTTTTGTTGTTATTTTTGTTGC
1 TGTTTTTGTTGTCATTTTTGTTGC
417783 T
1 T
417784 TTTAATGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.04, C:0.06, G:0.20, T:0.69
Consensus pattern (24 bp):
TGTTTTTGTTGTCATTTTTGTTGC
Found at i:417792 original size:24 final size:24
Alignment explanation
Indices: 417735--417803 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
417725 GTTTTCATGT
* *
417735 TGTTTTTGTTGTCATTTTTGTTGC
1 TGTTTATGTTGTTATTTTTGTTGC
*
417759 TGTTTTTGTTGTTATTTTTGTTGC
1 TGTTTATGTTGTTATTTTTGTTGC
*
417783 T-TTTAATGTTGTT-TTGTTGTT
1 TGTTT-ATGTTGTTATTTTTGTT
417804 ATTTTTGTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
23 10 0.24
24 31 0.76
ACGTcount: A:0.06, C:0.04, G:0.20, T:0.70
Consensus pattern (24 bp):
TGTTTATGTTGTTATTTTTGTTGC
Found at i:425207 original size:18 final size:19
Alignment explanation
Indices: 425172--425208 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
425162 TGCAAATGAA
*
425172 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
425191 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
425209 AGAGAAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.59
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:428389 original size:47 final size:47
Alignment explanation
Indices: 428319--428461 Score: 178
Period size: 47 Copynumber: 3.0 Consensus size: 47
428309 AAGGTGAAAG
* * * *
428319 TATGTGATAGTTTATCTGTAAATGTGGTGGCTTGTTCACAATTCGAT
1 TATGTGGTAGTATATCTGTAAATGTGGTGGCTTGTCCACAATTTGAT
* **
428366 TATGTGGTAGTATATCTGCAAATGTGGTGGCTTGTCCATGATTTGAT
1 TATGTGGTAGTATATCTGTAAATGTGGTGGCTTGTCCACAATTTGAT
* * * * *
428413 TATGTGGCAGTATATTTGTGATTTTGGTGGCTTGTCCACAATTTGAT
1 TATGTGGTAGTATATCTGTAAATGTGGTGGCTTGTCCACAATTTGAT
428460 TA
1 TA
428462 CTATGATAAT
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (47 bp):
TATGTGGTAGTATATCTGTAAATGTGGTGGCTTGTCCACAATTTGAT
Found at i:435837 original size:41 final size:41
Alignment explanation
Indices: 435792--435896 Score: 147
Period size: 41 Copynumber: 2.6 Consensus size: 41
435782 TGTAAATAGG
** *
435792 TTGAAAATACTTCCAGTTGGAAGTGCTTTTCAGCATTTCAC
1 TTGAAAACGCTTCCAGCTGGAAGTGCTTTTCAGCATTTCAC
* * *
435833 TTGAATACGCTTTCAGCTGGAAGTGCTTTTTAGCATTTCAC
1 TTGAAAACGCTTCCAGCTGGAAGTGCTTTTCAGCATTTCAC
*
435874 TTGAAAACGCTTCCAGCTAGAAG
1 TTGAAAACGCTTCCAGCTGGAAG
435897 GGTTTTCGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (41 bp):
TTGAAAACGCTTCCAGCTGGAAGTGCTTTTCAGCATTTCAC
Found at i:439083 original size:24 final size:24
Alignment explanation
Indices: 438927--439081 Score: 215
Period size: 24 Copynumber: 6.5 Consensus size: 24
438917 TCAACACAGT
438927 CTGCCTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
438951 CTGCCTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
438975 CTGCTTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
438999 CTG-CTTTCGGTGCCACAAGCACTC
1 CTGCCTTT-GGTGCCACAAGCACCC
* *
439023 CTG-CTTTCGGTGCCACTAGTACCC
1 CTGCCTTT-GGTGCCACAAGCACCC
* * *
439047 CAGCCTTTGGTTCCACCAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
439071 CTGCCTTTGGT
1 CTGCCTTTGGT
439082 TCAACTGGAA
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
23 3 0.03
24 111 0.94
25 4 0.03
ACGTcount: A:0.15, C:0.39, G:0.21, T:0.25
Consensus pattern (24 bp):
CTGCCTTTGGTGCCACAAGCACCC
Found at i:440745 original size:32 final size:32
Alignment explanation
Indices: 440709--440811 Score: 90
Period size: 32 Copynumber: 3.2 Consensus size: 32
440699 CAAGGGTTCA
440709 TGTTGATTTGACTAAATATCCTTATGACTGAT
1 TGTTGATTTGACTAAATATCCTTATGACTGAT
* * **
440741 TGTTGA-TT-A-T-AATGTGCTTCA-GAAGGGAT
1 TGTTGATTTGACTAAATATCCTT-ATG-ACTGAT
*
440770 CCTGTTGATTTGACTAAATATCCTTATGACTGTT
1 --TGTTGATTTGACTAAATATCCTTATGACTGAT
440804 TGTTGATT
1 TGTTGATT
440812 ATAATGTGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 18
0.66 0.11 0.22
Matches are distributed among these distances:
28 8 0.15
29 6 0.11
30 1 0.02
31 8 0.15
32 16 0.30
33 1 0.02
34 5 0.09
35 8 0.15
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (32 bp):
TGTTGATTTGACTAAATATCCTTATGACTGAT
Found at i:440782 original size:63 final size:63
Alignment explanation
Indices: 440700--440826 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
440690 ATCTAAAGGC
*
440700 AAGGGTTCATGTTGATTTGACTAAATATCCTTATGACTGATTGTTGATTATAATGTGCTTCAG
1 AAGGGATCATGTTGATTTGACTAAATATCCTTATGACTGATTGTTGATTATAATGTGCTTCAG
* * *
440763 AAGGGATCCTGTTGATTTGACTAAATATCCTTATGACTGTTTGTTGATTATAATGTGTTTCAG
1 AAGGGATCATGTTGATTTGACTAAATATCCTTATGACTGATTGTTGATTATAATGTGCTTCAG
440826 A
1 A
440827 TTTTTTATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (63 bp):
AAGGGATCATGTTGATTTGACTAAATATCCTTATGACTGATTGTTGATTATAATGTGCTTCAG
Done.