genome.fa.s15056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015056.1 Kokia drynarioides strain JFW-HI SEQ_130100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  274517

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462--495	2	17.5	2	87	6	52	44	0	2	52	1.16
460--499	10	4.3	9	87	9	55	42	0	2	55	1.13
6078--6107	2	15.5	2	93	6	53	50	0	0	50	1.00
9693--9721	5	5.8	5	100	0	58	0	17	62	20	1.33
23995--24022	14	2.0	14	100	0	56	42	14	7	35	1.73
23835--24178	175	2.0	174	84	5	453	32	22	15	30	1.94
25198--25262	31	2.1	31	91	0	103	40	6	13	40	1.70
28261--28369	58	1.9	57	81	5	130	39	17	15	27	1.90
34014--34075	32	1.9	33	90	3	99	37	1	17	43	1.59
35161--35203	9	4.2	10	77	16	52	51	0	0	48	1.00
35154--35203	22	2.4	22	86	6	68	52	0	2	46	1.12
35154--35203	11	4.7	11	78	9	59	52	0	2	46	1.12
38891--38937	22	2.2	21	84	3	58	23	0	4	72	1.02
39372--39424	27	2.0	27	92	0	88	66	5	5	22	1.35
44891--44940	9	6.1	9	76	21	56	42	0	0	58	0.98
46575--46608	18	1.9	18	88	5	52	29	0	5	64	1.17
47452--47502	24	2.2	23	86	10	68	27	5	3	62	1.36
48907--48997	46	2.0	46	97	0	173	39	9	3	47	1.53
49285--49357	31	2.4	31	81	4	76	43	5	6	43	1.54
50975--51025	24	2.2	23	86	10	68	62	3	0	33	1.13
51126--51181	25	2.2	25	84	9	69	21	8	28	41	1.83
52956--52986	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58504--58537	16	2.1	16	94	0	59	32	5	14	47	1.69
60636--61109	238	2.0	238	95	0	858	24	16	18	41	1.89
66102--66338	118	2.0	119	90	2	381	31	5	13	49	1.65
66782--66853	26	2.6	30	77	20	84	55	2	0	41	1.14
70868--71203	140	2.4	142	81	5	378	34	15	26	23	1.95
76060--76123	29	2.2	28	78	10	76	48	12	14	25	1.78
77594--77625	2	16.0	2	100	0	64	50	0	0	50	1.00
80270--80307	15	2.8	14	88	11	53	52	0	0	47	1.00
90459--90624	81	2.0	81	87	2	235	42	20	15	21	1.89
94147--94206	30	2.0	30	90	0	93	21	8	21	48	1.76
102412--102502	45	2.0	45	95	0	164	46	10	6	36	1.65
104903--104974	29	2.6	27	85	12	92	44	0	2	52	1.15
109731--109895	62	2.7	62	77	6	174	24	17	13	44	1.85
110098--110176	31	2.6	31	81	2	88	44	10	15	30	1.79
110051--110222	89	1.9	90	82	5	215	45	12	16	25	1.83
111504--111565	31	2.1	29	81	6	70	48	12	11	27	1.76
113549--113712	79	2.1	79	95	0	292	35	15	17	31	1.91
115286--115363	31	2.5	31	85	4	104	47	10	14	28	1.76
115286--115374	31	2.8	32	81	3	92	49	8	14	26	1.73
119512--120045	102	5.4	100	74	11	304	28	13	12	46	1.79
119659--120027	101	3.7	102	76	12	263	29	13	10	46	1.77
119816--120035	94	2.3	98	80	8	245	28	12	12	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120316--120376	24	2.5	25	70	2	61	24	1	3	70	1.11
120586--120709	63	2.0	63	90	0	194	40	14	8	36	1.77
126738--126779	18	2.3	18	87	0	57	59	7	0	33	1.25
133041--133110	26	2.7	25	73	8	68	32	4	2	60	1.31
151381--151433	23	2.3	24	84	12	67	56	7	1	33	1.38
158415--158480	24	2.8	24	95	0	123	37	15	25	21	1.92
159156--159200	23	1.9	23	82	13	56	60	0	4	35	1.17
164121--164171	15	3.5	15	71	15	52	54	9	7	27	1.60
170715--170785	17	4.1	18	74	5	74	53	8	1	36	1.40
172106--172136	16	1.9	16	93	0	53	41	6	3	48	1.45
188241--188265	8	3.1	8	100	0	50	48	0	0	52	1.00
193208--193242	10	3.4	10	84	7	52	65	11	2	20	1.37
193591--193627	18	2.0	19	94	5	67	62	5	5	27	1.39
193670--193704	10	3.4	10	84	7	52	65	11	2	20	1.37
196271--196303	2	16.5	2	100	0	66	48	0	0	51	1.00
210894--211029	68	2.0	68	98	0	263	41	19	8	29	1.82
218022--218072	7	7.3	7	100	0	102	43	13	0	43	1.44
224821--224854	16	2.2	16	89	5	52	50	0	0	50	1.00
232045--232076	3	10.7	3	93	0	55	62	0	37	0	0.95
232949--232980	2	16.0	2	93	0	55	46	0	3	50	1.17
243997--244048	19	2.8	18	83	11	68	34	3	1	59	1.27
246251--246331	29	2.7	30	77	11	85	25	8	11	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250877--250930	20	2.6	20	77	16	56	59	3	0	37	1.15
257146--257171	2	13.0	2	100	0	52	0	0	50	50	1.00
267780--267820	4	10.2	4	100	0	82	24	0	24	51	1.49
268190--268254	31	2.0	33	85	11	91	40	0	1	58	1.07
268662--268698	13	2.9	13	92	4	58	8	21	0	70	1.13
268733--268817	31	2.6	33	76	16	88	50	2	1	45	1.22

Tables:   1

The End!