Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015059.1 Kokia drynarioides strain JFW-HI SEQ_130103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126363

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1215--1239
2
12.5
2
100
0
50
52
0
0
48
1.00
1307--1341
18
2.0
18
94
5
63
65
0
34
0
0.93
6182--6222
2
20.0
2
95
5
73
48
0
2
48
1.14
7218--7288
7
9.7
7
80
13
72
60
0
39
0
0.97
7211--7288
23
3.0
26
71
19
72
60
0
39
0
0.97
7298--7322
12
2.1
12
100
0
50
36
0
0
64
0.94
7956--8004
16
3.2
16
70
21
50
57
10
0
32
1.32
9312--9403
42
2.2
43
78
9
100
31
10
10
46
1.73
9853--9892
6
6.7
6
91
0
53
42
25
32
0
1.55
9962--10053
45
2.0
45
82
0
112
33
26
17
22
1.96
10403--10442
15
2.8
14
85
7
53
47
17
5
30
1.69
10410--10441
15
2.1
15
94
0
55
50
15
6
28
1.68
12836--12905
24
2.9
24
84
0
95
20
15
17
47
1.83
13253--13295
19
2.2
19
88
12
61
62
0
2
34
1.08
13253--13309
20
2.9
18
82
15
60
63
1
1
33
1.15
18456--18489
13
2.7
13
90
4
52
8
11
0
79
0.94
18961--19005
22
2.2
20
88
11
65
48
2
2
46
1.26
30957--30999
18
2.4
18
80
7
52
51
0
2
46
1.13
31349--31404
25
2.4
22
88
8
76
66
3
5
25
1.29
42669--42696
4
7.0
4
100
0
56
25
0
25
50
1.50
49459--49493
17
2.1
17
100
0
70
51
11
11
25
1.71
53291--53327
7
5.1
7
93
6
65
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53291--53327
15
2.6
14
95
4
65
40
0
0
59
0.97
53772--53819
6
8.0
6
100
0
96
50
33
0
16
1.46
55345--55437
40
2.3
40
96
1
168
46
16
20
17
1.84
55780--55806
13
2.1
13
100
0
54
92
0
7
0
0.38
57851--57894
22
2.0
22
86
0
61
68
2
4
25
1.20
57861--57905
23
1.9
23
86
4
63
64
2
4
28
1.25
57913--57951
6
6.2
6
82
11
51
53
2
0
43
1.14
57912--57964
26
2.0
26
82
7
63
58
1
0
39
1.09
58514--58557
20
2.4
18
85
14
56
34
0
13
52
1.41
59444--59507
23
2.8
23
88
4
85
26
12
23
37
1.90
59473--59518
23
2.0
23
83
8
58
39
10
17
32
1.84
64581--64605
9
2.8
9
100
0
50
92
0
8
0
0.40
72538--72580
15
2.9
15
75
0
50
16
39
2
41
1.61
74890--74964
31
2.4
31
86
0
105
38
5
1
54
1.31
74965--75017
26
2.0
26
85
7
72
45
1
0
52
1.11
75967--75998
12
2.7
12
100
0
64
28
28
15
28
1.96
80835--80912
29
2.6
30
84
8
97
37
5
21
35
1.76
80936--81300
29
12.5
28
74
12
265
34
3
26
35
1.74
80936--81300
58
6.2
56
76
13
294
34
3
26
35
1.74
80863--81266
89
4.6
85
76
14
297
34
3
26
35
1.74
83127--83160
17
2.0
17
100
0
68
58
0
0
41
0.98
88496--88523
6
4.7
6
100
0
56
0
14
14
71
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100455--100509
28
2.0
27
82
3
65
36
0
1
61
1.06
100431--100504
20
3.9
19
71
25
59
43
0
1
55
1.08
100723--100751
14
2.1
14
100
0
58
20
20
27
31
1.98
101693--101783
45
2.0
45
95
0
164
42
15
17
24
1.88
101845--101883
17
2.3
17
95
0
69
15
35
20
28
1.93
109116--109172
28
2.0
28
100
0
114
31
19
28
21
1.97
109495--109533
17
2.3
17
86
0
51
17
10
23
48
1.78
111907--112029
16
7.6
17
70
8
89
24
13
25
37
1.91
115062--115113
16
3.2
16
84
15
72
23
13
25
38
1.91
121274--121516
30
8.2
29
84
9
276
36
24
3
35
1.73
121259--121523
59
4.4
60
84
6
308
36
24
3
35
1.72
121460--121559
29
3.5
28
79
5
83
36
30
2
32
1.69

Tables:   1

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