Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001506.1 Kokia drynarioides strain JFW-HI SEQ_113053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:360 original size:17 final size:17

Alignment explanation


    Indices: 338--370  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        328 TGCATCTGTA

                       *     
        338 ACTGTATTTGTGACTTG
          1 ACTGTATTTGTAACTTG

                            
        355 ACTGTATTTGTAACTT
          1 ACTGTATTTGTAACTT

        371 TATCTATTAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.21, C:0.12, G:0.18, T:0.48


Consensus pattern (17 bp):   
ACTGTATTTGTAACTTG
Done.